Chapter 4 Site-Selective Red-Edge Effects

Methods in Enzymology

Volumn 450, Issue , 2008, Pages 59-78

  Demchenko, Alexander P ^a  

^a PALLADIN INSTITUTE OF BIOCHEMISTRY   (Ukraine)

Author keywords

[No Author keywords available]

Indexed keywords

INDOLE; TRYPTOPHAN; FLUORESCENT DYE; INDOLE DERIVATIVE;

DIELECTRIC CONSTANT; EXCITATION; FLUORESCENCE; MOLECULAR MODEL; PRIORITY JOURNAL; REVIEW; STEADY STATE; ARTICLE; CHEMISTRY; METHODOLOGY; SPECTROFLUOROMETRY;

FLUORESCENT DYES; INDOLES; SPECTROMETRY, FLUORESCENCE; TRYPTOPHAN;

EID: 58249092065     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(08)03404-6     Document Type: Review

References (35)

1. Al-Hassan K.A., and El-Byoumi M.A. Excited-state phenomena associated with solvation site heterogeneity: A large edge-excitation red-shift in a merocyanine dye-ethanol solution. Chem. Phys. Lett. 76 (1980) 121
2. Bader A.N., Pivovarenko V.G., Demchenko A.P., Ariese F., and Gooijer C. Influence of redistribution of electron density on the excited state and ground state proton transfer rates of 3-hydroxyflavone and its derivatives studied by Spol'skii spectroscopy. J. Phys. Chem. A. 108 (2004) 10589
3. Brand L., and Gohlike J.R. Nanosecond time-resolved fluorescence of a protein-dye complex BSA+TNS. J. Biol. Chem. 246 (1971) 2317
4. 1Lb transitions of tryptophan: Application of theory and experimental observations to fluorescence of proteins. Methods Enzymol. 278 (1997) 113
5. Chattopadhyay A. Exploring membrane organization and dynamics by the wavelength-selective fluorescence approach. Chem. Phys. Lipids 122 (2003) 3
6. Chou P.-T., Chang C.-P., Clements J.H., and Kuo M.-S. Synthesis and spectroscopic studies of 4-Formyl-4′-N, N-dimethylamino-1, 1′-biphenyl: The unusual Red Edge Effect and efficient laser generation. J. Fluorescence 5 (1995) 369
7. Demchenko A.P. Dependence of human serum albumin fluorescence spectrum on excitation wavelength. Ukr. Biochim. Zh. 53 (1981) 22
8. Demchenko A.P. On the nanosecond mobility in proteins. Edge excitation fluorescence red shift of protein-bound 2-(p-toluidinylnaphthalene)-6-sulfonate. Biophys. Chem. 15 (1982) 101
9. Demchenko A.P. Ultraviolet spectroscopy of proteins (1986), Springer Verlag, Heidelberg
10. Demchenko A.P. Fluorescence analysis of protein dynamics. Essays Biochem. 22 (1986) 120
11. Demchenko A.P. Red-edge-excitation fluorescence spectroscopy of single-tryptophan proteins. Eur. Biophys. J. 16 (1988) 121
12. Demchenko A.P. Site-selective excitation: A new dimension in protein and membrane spectroscopy. Trends Biochem. Sci. 10 (1989) 374-377
13. Demchenko A.P. Fluorescence and dynamics in proteins. In: Lakowicz J.R. (Ed). Topics in Fluorescence Spectroscopy Vol. 3 (1991), Plenum Press, New York 61-111
14. Demchenko A.P. Does biocatalysis involve inhomogeneous kinetics?. FEBS Lett. 310 (1992) 211
15. Demchenko A.P. Protein fluorescence, dynamics and function: Exploration of analogy between electronically excited and biocatalytic transition states. Biochim. Biophys. Acta 1209 (1994) 149
16. Demchenko A.P. The red-edge effects: 30 years of exploration. Luminescence 17 (2002) 19-42
17. Demchenko A.P. Visualization and sensing of intermolecular interactions with two-color fluorescent probes. FEBS Letters 580 (2006) 2951
18. Demchenko A.P., and Ladohin A.S. Red-edge fluorescence spectroscopy of indole and tryptophan. Eur. Biophys. J. 15 (1988) 369
19. Demchenko A.P., and Sytnik A.I. Site-selectivity in excited-state reactions in solutions. J. Phys. Chem. 95 (1991) 10518-10524
20. Demchenko A.P., and Sytnik A.I. Solvent reorganizational red-edge effect in intramolecular electron transfer. Proc. Natl. Acad. Sci. USA 88 (1991) 9311
21. Haugland R.P. Handbook of fluorescent probes and research chemicals. (1996), Molecular Probes, Eugene, OR
22. Klymchenko A.S., and Demchenko A.P. Multiparametric probing of microenvironment with solvatochromic fluorescent dyes. Methods in Enzymology 450 (2008) R21 37 (This volume)
23. Lakowicz J.R. On spectral relaxation in proteins. Photochem. Photobiol. 72 (2000) 421
24. Marcus R., and Sutin N. Electron transfers in chemistry and biology. Biochim. Biophys. Acta 811 (1985) 265
25. Maroncelli M., McInnis J., and Fleming G.R. Polar solvent dynamics and electron transfer reactions. Science 243 (1989) 1674
26. Mazurenko Y.T., and Bakhshiev N.G. The influence of orientational dipolar relaxation on spectral, temporal and polarization properties of luminescence in solutions. Opt. Spektr. 28 (1970) 905
27. Mulkherjee S., and Chattopadhyay A. Wavelength-selective fluorescence asa novel tool to study organization and dynamics in complex biological systems. J. Fluorescence 5 (1995) 237
28. Nemkovich N.A., Rubinov A.N., and Tomin V.I. Kinetics of luminescence spectra of rigid dye solutions due to directed electronic energy transfer. J. Lumin. 23 (1981) 349
29. Nemkovich N.A., Rubinov A.N., and Tomin V.I. Inhomogeneous broadening of electronic spectra of dye molecules in solutions. In: Lakowicz J.R. (Ed). Topics in fluorescence spectroscopy 2 (1991), Plenum Press, New York 367
30. Raghuraman H., Kelkar D.A., and Chattopadhyay A. Novel insights into protein structure and dynamics utilizing the Red Edge Excitation Shift approach. In: Geddes C.D., and Lakowicz J.R. (Eds). Reviews in Fluorescence (2005) 199-222
31. In: Richert R., and Blumen A. (Eds). Disorder effects on relaxational processes: Glasses, polymers, proteins (1994), Springer-Verlag, Berlin
32. Rubinov A.N., Tomin V.I., and Bushuk B.A. Kinetic spectroscopy of orientational states of solvated dye molecules in polar solution. J. Lumin. 26 (1982) 377
33. Suppan P., and Ghoneim N. Solvatochromism (1997), Royal Society of Chemistry, Cambridge, UK
34. Vincent M., Gallay J., and Demchenko A.P. Solvent relaxation around the excited state of indole: Analysis of fluorescence lifetime distributions and time-dependent spectral shifts. J. Phys. Chem. 99 (1995) 34931
35. Weber G., and Shinitzky M. Failure of energy transfer between identical aromatic molecules on excitation at the long wave edge of the absorption spectrum. Proc. Natl. Acad. Sci. USA 65 (1970) 823