Identification of Amino Acid Substitutions in Avian Influenza Virus (H5N1) Matrix Protein 1 by Using Nanoelectrospray MS and MS/MS

Journal of the American Society for Mass Spectrometry

Volumn 20, Issue 2, 2009, Pages 312-320

  Liu, Ning ^a   Song, Wenjun ^b   Lee, Kim Chung ^a   Wang, Pui ^b   Chen, Honglin ^b   Cai, Zongwei ^a  

^a HONG KONG BAPTIST UNIVERSITY   (Hong Kong)

^b THE UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SUBSTITUTIONS; AVIAN INFLUENZAS; BIOINFORMATICS ANALYSES; DE NOVO SEQUENCING; DEAMIDATION; MATRIX PROTEINS; NANOELECTROSPRAY; QUADRUPOLE; RNA TRANSCRIPTIONS; STRUCTURAL PROTEINS; TANDEM MASS SPECTROMETRIES; TIME OF FLIGHTS;

AMINATION; AMINES; AMINO ACIDS; BIOINFORMATICS; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS SPECTROMETERS; MASS SPECTROMETRY; NUCLEIC ACIDS; ORGANIC ACIDS; RNA; SPECTROMETERS; SPECTROMETRY;

VIRUSES;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ANIMALS; CHICK EMBRYO; INFLUENZA A VIRUS, H5N1 SUBTYPE; MOLECULAR SEQUENCE DATA; NANOTECHNOLOGY; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; TANDEM MASS SPECTROMETRY; VIRAL MATRIX PROTEINS;

AVES; AVIAN INFLUENZA VIRUS;

EID: 58249089286     PISSN: 10440305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jasms.2008.10.010     Document Type: Article

References (25)

1. Brankston G., Gitterman L., Hirji Z., Lemieux C., and Gardam M. Transmission of Influenza A in Human Beings. Lancet Infect. Dis. 7 (2007) 257-265
2. Nicholson K.G., Wood J.M., and Zambon M. Influenza. Lancet. 362 (2003) 1733-1745
3. Martin K., and Helenius A. Nuclear Transport of Influenza Virus Ribonucleoproteins: The Viral Matrix Protein (M1) Promotes Export and Inhibits Import. Cell 67 (1991) 117-130
4. Whittaker G., Bui M., and Helenius A. Nuclear Trafficking of Influenza virus Ribonucleoproteins in Heterokaryons. J. Virol. 70 (1996) 2743-2756
5. Elster C., Larsen K., Gagnon J., Ruigrok R.W., and Baudin F. Influenza virus M1 protein binds to RNA through its nuclear localization signal. J. Gen. Virol. 78 (1997) 1589-1596
6. Garcia-Robles I., Akarsu H., Müller C.W., Ruigrok R.W., and Baudin F. Interaction of Influenza Virus Proteins with Nucleosomes. Virology 332 (2005) 329-336
7. Anwar T., Lal S.K., and Khan A.U. Matrix Pprotein 1: A Comparative in Silico Study on Different Strains of Influenza A H5N1 Virus. Bioinformation 1 (2006) 253-256
8. Hui E.K., Smee D.F., Wong M.H., and Nayak D.P. Mutations in Influenza Virus M1 CCHH, the Putative Zinc Finger Motif, Cause Attenuation in Mice and Protect Mice Against Lethal Influenza Virus Infection. J. Virol. 80 (2006) 5697-5707
9. Govorkova E.A., Gambaryan A.S., Claas E.C., and Smirnov Y.A. Amino Acid Changes in the Hemagglutinin and Matrix Proteins of Influenza a (H2) Viruses Adapted to Mice. Acta Virol 4 (2000) 241-248
10. Liu T., and Ye Z. Restriction of Viral Replication by Mutation of the Influenza Virus Matrix Protein. J. Virol. 76 (2002) 13055-13061
11. Kiselar J.G., and Downard K.M. Antigenic Surveillance of the Influenza Virus by Mass Spectrometry. Biochemistry 38 (1999) 14185-14191
12. Morrissey B., and Downard K.M. A Proteomics Approach to Survey the Antigenicity of the Influenza Virus by Mass Spectrometry. Proteomics 6 (2006) 2034-2041
13. Serebryakova M.V., Kordyukova L.V., Baratova L.A., and Markushin S.G. Mass Spectrometric Sequencing and Acylation Character Analysis of C-Terminal Anchoring Segment from Influenza A Hemagglutinin. Eur. J. Mass Spectrom. (Chichester, Eng) 12 (2006) 51-62
14. Tanaka K., Takenaka S., Tsuyama S., and Wada Y. Determination of Unique Amino Acid Substitutions in Protein Variants by Peptide Mass Mapping with FT-ICR MS. J. Am. Soc. Mass Spectrom. 17 (2006) 508-513
15. Mandal A.K., Bisht S., Bhat V.S., Krishnaswamy P.R., and Balaram P. Electrospray Mass Spectrometric Characterization of Hemoglobin Q (Hb Q-India) and a Double Mutant Hemoglobin S/D in Clinical Samples. Clin. Biochem. 41 (2008) 75-81
16. Nepomuceno A.I., Mason C.J., Muddiman D.C., Bergen III H.R., and Zeldenrust S.R. Detection of Genetic Variants of Transthyretin by Liquid Chromatography-Dual Electrospray Ionization Fourier-Transform Ion-Cyclotron-Resonance Mass Spectrometry. Clin. Chem. 50 (2004) 1535-1543
17. Cunsolo V., Foti S., Saletti R., Gilbert S., Tatham A.S., and Shewry P.R. Structural Studies of the Allelic Wheat Glutenin Subunits 1Bx7 and 1Bx20 by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry and High-Performance Liquid Chromatography/Electrospray Ionization Mass Spectrometry. J. Mass Spectrom. 39 (2004) 66-78
18. Li K.S., Guan Y., Wang J., Smith G.J., Xu K.M., Duan L., Rahardjo A.P., Puthavathana P., Buranathai C., Nguyen T.D., Estoepangestie A.T., Chaisingh A., Auewarakul P., Long H.T., Hanh N.T., Webby R.J., Poon L.L., Chen H., Shortridge K.F., Yuen K.Y., Webster R.G., and Peiris J.S. Genesis of a Highly Pathogenic and Potentially Pandemic H5N1 Influenza Virus in Eastern Asia. Nature 430 (2004) 209-213
19. Gregoriades A. The Membrane Protein of Influenza Virus: Extraction from Virus and Infected Cell with Acidic Chloroform-Methanol. Virology 54 (1973) 369-383
20. http://ca.expasy.org/tools/protscale.html.
21. http://www.cmpharm.ucsf.edu/∼nomi/nnpredict.html.
22. http://gpcr2.biocomp.unibo.it/cgi/predictors/I-Mutant2.0/I-Mutant2.0.cgi.
23. Widjaja L., Ilyushina N., Webster R.G., and Webby R.J. Molecular Changes Associated with Adaptation of Human Influenza A Virus in Embryonated Chicken Eggs. Virology 350 (2006) 137-145
24. Robinson N.E., and Robinson A.B. Deamidation of Human Proteins. Proc. Natl. Acad. Sci. U.S.A. 98 (2001) 12409-12413
25. Robinson N.E. Protein Deamidation. Proc. Natl. Acad. Sci. U.S.A. 99 (2002) 5283-5288