메뉴 건너뛰기




Volumn 13, Issue 10, 2008, Pages 1014-1024

Atom- and bond-based 2D TOMOCOMD-CARDD approach and ligand-based virtual screening for the drug discovery of new tyrosinase inhibitors

Author keywords

Dicoumarin; LDA based QSAR model; Ligand based virtual screening; TOMOCOMD CARDD descriptor; Tyrosinase inhibitor compound

Indexed keywords

DICOUMAROL DERIVATIVE; KOJIC ACID; LIGAND; MONOPHENOL MONOOXYGENASE;

EID: 58149389321     PISSN: 10870571     EISSN: 1552454X     Source Type: Journal    
DOI: 10.1177/1087057108326078     Document Type: Article
Times cited : (36)

References (40)
  • 1
    • 33645923096 scopus 로고    scopus 로고
    • Computational methods in developing quantitative structure-activity relationships (QSAR): A review
    • Dudek AZ, Arodz T., Gálvez J.: Computational methods in developing quantitative structure-activity relationships (QSAR): a review. Comb Chem High Throughput Screen 2006 ; 9: 213-228.
    • (2006) Comb Chem High Throughput Screen , vol.9 , pp. 213-228
    • Dudek, A.Z.1    Arodz, T.2    Gálvez, J.3
  • 2
    • 0035438389 scopus 로고    scopus 로고
    • QSARs for 6-azasteroids as inhibitors of human type 1 5alpha-reductase: Prediction of binding affinity and selectivity relative to 3-BHSD
    • Bakken GA, Jurs PC: QSARs for 6-azasteroids as inhibitors of human type 1 5alpha-reductase: prediction of binding affinity and selectivity relative to 3-BHSD. J Chem Inf Comput Sci 2001 ; 41: 1255-1265.
    • (2001) J Chem Inf Comput Sci , vol.41 , pp. 1255-1265
    • Bakken, G.A.1    Jurs, P.C.2
  • 3
    • 1642585614 scopus 로고    scopus 로고
    • Virtual high-throughput in silico screening
    • Seifert HJM, Wolf K., Vitt D.: Virtual high-throughput in silico screening. Biosilico 2003 ; 1: 143-149.
    • (2003) Biosilico , vol.1 , pp. 143-149
    • Seifert, H.J.M.1    Wolf, K.2    Vitt, D.3
  • 4
    • 33749517866 scopus 로고    scopus 로고
    • Polyphenol oxidases in plants and fungi: Going places? a review
    • Mayer AM: Polyphenol oxidases in plants and fungi: going places? A review. Phytochemistry 2006 ; 67: 2318-2331.
    • (2006) Phytochemistry , vol.67 , pp. 2318-2331
    • Mayer, A.M.1
  • 6
    • 33846648506 scopus 로고    scopus 로고
    • 3D-QSAR and molecular docking studies of benzaldehyde thiosemicarbazone, benzaldehyde, benzoic acid, and their derivatives as phenoloxidase inhibitors
    • Xue CB, Zhang L., Luo WC, Xie XY, Jiang L., Xiao T.: 3D-QSAR and molecular docking studies of benzaldehyde thiosemicarbazone, benzaldehyde, benzoic acid, and their derivatives as phenoloxidase inhibitors. Bioorg Med Chem 2007 ; 15: 2006-2015.
    • (2007) Bioorg Med Chem , vol.15 , pp. 2006-2015
    • Xue, C.B.1    Zhang, L.2    Luo, W.C.3    Xie, X.Y.4    Jiang, L.5    Xiao, T.6
  • 7
    • 33845972688 scopus 로고    scopus 로고
    • TOMOCOMD-CARDD descriptors-based virtual screening of tyrosinase inhibitors: Evaluation of different classification model combinations using bond-based linear indices
    • Casanola-Martin GM, Marrero-Ponce Y., Khan MT, Ather A., Sultan S., Torrens F.,, et al. TOMOCOMD-CARDD descriptors-based virtual screening of tyrosinase inhibitors: evaluation of different classification model combinations using bond-based linear indices. Bioorg Med Chem 2007 ; 15: 1483-1503.
    • (2007) Bioorg Med Chem , vol.15 , pp. 1483-1503
    • Casanola-Martin, G.M.1    Marrero-Ponce, Y.2    Khan, M.T.3    Ather, A.4    Sultan, S.5    Torrens, F.6
  • 8
    • 23844545621 scopus 로고    scopus 로고
    • Tyrosinase inhibitors from natural and synthetic sources: Structure, inhibition mechanism and perspective for the future
    • Kim YJ, Uyama H.: Tyrosinase inhibitors from natural and synthetic sources: structure, inhibition mechanism and perspective for the future. Cell Mol Life Sci 2005 ; 62: 1707-1723.
    • (2005) Cell Mol Life Sci , vol.62 , pp. 1707-1723
    • Kim, Y.J.1    Uyama, H.2
  • 11
    • 0012019079 scopus 로고    scopus 로고
    • New 3D molecular descriptors: The WHIM theory and QSAR applications
    • Todeschini R., Gramatica P.: New 3D molecular descriptors: the WHIM theory and QSAR applications. Perspect Drug Discov Des 1998 ;9- 11: 355-380.
    • (1998) Perspect Drug Discov des , vol.11 , pp. 355-380
    • Todeschini, R.1    Gramatica, P.2
  • 12
    • 0036589086 scopus 로고    scopus 로고
    • Structure/response correlations and similarity/diversity analysis by GETAWAY descriptors: 1. Theory of the novel 3D molecular descriptors
    • Consonni V., Todeschini R., Pavan M.: Structure/response correlations and similarity/diversity analysis by GETAWAY descriptors: 1. Theory of the novel 3D molecular descriptors. J Chem Inf Comput Sci 2002 ; 42: 682-692.
    • (2002) J Chem Inf Comput Sci , vol.42 , pp. 682-692
    • Consonni, V.1    Todeschini, R.2    Pavan, M.3
  • 14
    • 8844273256 scopus 로고    scopus 로고
    • Total and local (atom and atom type) molecular quadratic indices: Significance interpretation, comparison to other molecular descriptors, and QSPR/QSAR applications
    • Marrero-Ponce Y.: Total and local (atom and atom type) molecular quadratic indices: significance interpretation, comparison to other molecular descriptors, and QSPR/QSAR applications. Bioorg Med Chem 2004 ; 12: 6351-6369.
    • (2004) Bioorg Med Chem , vol.12 , pp. 6351-6369
    • Marrero-Ponce, Y.1
  • 15
    • 12344279256 scopus 로고    scopus 로고
    • Atom, atom-type, and total linear indices of the molecular pseudograph's atom adjacency matrix: Application to QSPR/QSAR studies of organic compounds
    • Marrero-Ponce Y., Castillo-Garit JA, Torrens F., Romero-Zaldivar V., Castro E.: Atom, atom-type, and total linear indices of the molecular pseudograph's atom adjacency matrix: application to QSPR/QSAR studies of organic compounds. Molecules 2004 ; 9: 1100-1123.
    • (2004) Molecules , vol.9 , pp. 1100-1123
    • Marrero-Ponce, Y.1    Castillo-Garit, J.A.2    Torrens, F.3    Romero-Zaldivar, V.4    Castro, E.5
  • 16
    • 34047114759 scopus 로고    scopus 로고
    • Bond-based 2D TOMOCOMD-CARDD approach for drug discovery: Aiding decision-making in 'in silico' selection of new lead tyrosinase inhibitors
    • Marrero-Ponce Y., Khan MT, Casanola-Martin GM, Ather A., Sultankhodzhaev MN, Garcia-Domenech R.,, et al. Bond-based 2D TOMOCOMD-CARDD approach for drug discovery: aiding decision-making in 'in silico' selection of new lead tyrosinase inhibitors. J Comput Aided Mol Des 2007 ; 21: 167-188.
    • (2007) J Comput Aided Mol des , vol.21 , pp. 167-188
    • Marrero-Ponce, Y.1    Khan, M.T.2    Casanola-Martin, G.M.3    Ather, A.4    Sultankhodzhaev, M.N.5    Garcia-Domenech, R.6
  • 17
    • 33845911522 scopus 로고    scopus 로고
    • Bond-based global and local (bond, group and bond-type) quadratic indices and their applications to computer-aided molecular design: 1. QSPR studies of diverse sets of organic chemicals
    • Marrero-Ponce Y., Torrens F., Alvarado YJ, Rotondo R.: Bond-based global and local (bond, group and bond-type) quadratic indices and their applications to computer-aided molecular design: 1. QSPR studies of diverse sets of organic chemicals. J Comput Aided Mol Des 2006 ; 20: 685-701.
    • (2006) J Comput Aided Mol des , vol.20 , pp. 685-701
    • Marrero-Ponce, Y.1    Torrens, F.2    Alvarado, Y.J.3    Rotondo, R.4
  • 20
    • 0042431354 scopus 로고
    • Cluster significance analysis
    • Waterbeemd H (ed): Weinheim, Germany: VCH Publishers
    • McFarland JW, Gans DJ: Cluster significance analysis. In Waterbeemd H (ed): Chemometric Methods in Molecular Design. Weinheim, Germany: VCH Publishers, 1995: 295-307.
    • (1995) Chemometric Methods in Molecular Design , pp. 295-307
    • McFarland, J.W.1    Gans, D.J.2
  • 21
    • 0034535091 scopus 로고    scopus 로고
    • Detection of circulating malignant cells by RT-PCR in long-term clinically disease-free I stage melanoma patients
    • Baldi A., Dragonetti E., Battista T., Groeger AM, Esposito V., Baldi G.,, et al. Detection of circulating malignant cells by RT-PCR in long-term clinically disease-free I stage melanoma patients. Anticancer Res 2000 ; 20: 3923-3928.
    • (2000) Anticancer Res , vol.20 , pp. 3923-3928
    • Baldi, A.1    Dragonetti, E.2    Battista, T.3    Groeger, A.M.4    Esposito, V.5    Baldi, G.6
  • 23
    • 0033730007 scopus 로고    scopus 로고
    • In silico studies for the rational discovery of anticonvulsant compounds
    • Estrada E., Peña A.: In silico studies for the rational discovery of anticonvulsant compounds. Bioorg Med Chem 2000 ; 8: 2755-2770.
    • (2000) Bioorg Med Chem , vol.8 , pp. 2755-2770
    • Estrada, E.1    Peña, A.2
  • 24
    • 0036933967 scopus 로고    scopus 로고
    • Predictive QSAR modeling based on diversity sampling of experimental datasets for the training and test set selection
    • Golbraikh A., Tropsha A.: Predictive QSAR modeling based on diversity sampling of experimental datasets for the training and test set selection. Mol Divers 2002 ; 5: 231-243.
    • (2002) Mol Divers , vol.5 , pp. 231-243
    • Golbraikh, A.1    Tropsha, A.2
  • 28
    • 36949022890 scopus 로고    scopus 로고
    • Predictive QSAR modeling workflow, model applicability domains, and virtual screening
    • Tropsha A., Golbraikh A.: Predictive QSAR modeling workflow, model applicability domains, and virtual screening. Curr Pharm Des 2007 ; 13: 3494-3504.
    • (2007) Curr Pharm des , vol.13 , pp. 3494-3504
    • Tropsha, A.1    Golbraikh, A.2
  • 30
    • 0036980746 scopus 로고    scopus 로고
    • Chemical similarity and biological activities
    • Kubinyi H.: Chemical similarity and biological activities. J Braz Chem Soc 2002 ; 13: 717-726.
    • (2002) J Braz Chem Soc , vol.13 , pp. 717-726
    • Kubinyi, H.1
  • 31
    • 33847207834 scopus 로고    scopus 로고
    • Molecular similarity analysis in virtual screening: Foundations, limitations and novel approaches
    • Eckert H., Bajorath J.: Molecular similarity analysis in virtual screening: foundations, limitations and novel approaches. Drug Discov Today 2007 ; 12: 225-236.
    • (2007) Drug Discov Today , vol.12 , pp. 225-236
    • Eckert, H.1    Bajorath, J.2
  • 32
    • 34250628103 scopus 로고    scopus 로고
    • Principles of QSAR models validation: Internal and external
    • Gramatica P.: Principles of QSAR models validation: internal and external. QSAR Comb Sci 2007 ; 26: 694-701.
    • (2007) QSAR Comb Sci , vol.26 , pp. 694-701
    • Gramatica, P.1
  • 33
    • 0043132440 scopus 로고    scopus 로고
    • Methods for reliability and uncertainty assessment and for applicability evaluations of classification- and regression-based QSARs
    • Eriksson L., Jaworska J., Worth AP, Cronin MT, McDowell RM, Gramatica P.: Methods for reliability and uncertainty assessment and for applicability evaluations of classification- and regression-based QSARs. Environ Health Perspect 2003 ; 111: 1361-1375.
    • (2003) Environ Health Perspect , vol.111 , pp. 1361-1375
    • Eriksson, L.1    Jaworska, J.2    Worth, A.P.3    Cronin, M.T.4    McDowell, R.M.5    Gramatica, P.6
  • 34
    • 33847675464 scopus 로고    scopus 로고
    • On the applicability of QSAR for recognition of miRNA bioorganic structures at early stages of organism and cell development: Embryo and stem cells
    • Gonzalez-Diaz H., Vilar S., Santana L., Podda G., Uriarte E.: On the applicability of QSAR for recognition of miRNA bioorganic structures at early stages of organism and cell development: embryo and stem cells. Bioorg Med Chem 2007 ; 15: 2544-2550.
    • (2007) Bioorg Med Chem , vol.15 , pp. 2544-2550
    • Gonzalez-Diaz, H.1    Vilar, S.2    Santana, L.3    Podda, G.4    Uriarte, E.5
  • 35
    • 26944468691 scopus 로고    scopus 로고
    • Statistically validated QSARs, based on theoretical descriptors, for modeling aquatic toxicity of organic chemicals in Pimephales promelas (fathead minnow)
    • Papa E., Villa F., Gramatica P.: Statistically validated QSARs, based on theoretical descriptors, for modeling aquatic toxicity of organic chemicals in Pimephales promelas (fathead minnow). J Chem Inf Model 2005 ; 45: 1256-1266.
    • (2005) J Chem Inf Model , vol.45 , pp. 1256-1266
    • Papa, E.1    Villa, F.2    Gramatica, P.3
  • 37
    • 39049167553 scopus 로고    scopus 로고
    • Computational chemistry approach for the early detection of drug-induced idiosyncratic liver toxicity
    • Cruz-Monteagudo M., Cordeiro Mnds, Borges F.: Computational chemistry approach for the early detection of drug-induced idiosyncratic liver toxicity. J Comput Chem 2008 ; 29: 533-549.
    • (2008) J Comput Chem , vol.29 , pp. 533-549
    • Cruz-Monteagudo, M.1    Mnds, C.2    Borges, F.3
  • 39
    • 3242884966 scopus 로고    scopus 로고
    • High-throughput docking as a source of novel drug leads
    • Alvarez JC: High-throughput docking as a source of novel drug leads. Curr Opin Chem Biol 2004 ; 8: 365-370.
    • (2004) Curr Opin Chem Biol , vol.8 , pp. 365-370
    • Alvarez, J.C.1
  • 40
    • 3342884458 scopus 로고    scopus 로고
    • Integrating cheminformatic analysis in combinatorial chemistry
    • Blake JF: Integrating cheminformatic analysis in combinatorial chemistry. Curr Opin Chem Biol 2004 ; 8: 407-411.
    • (2004) Curr Opin Chem Biol , vol.8 , pp. 407-411
    • Blake, J.F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.