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Volumn 31, Issue 1, 2009, Pages 19-29

Potential biomarkers of colorectal adenoma-dysplasia-carcinoma progression: mRNA expression profiling and in situ protein detection on TMAs reveal 15 sequentially upregulated and 2 downregulated genes

Author keywords

Adenoma dysplasia carcinoma sequence; Amnionless homolog; Colorectal cancer; Gene expression signature; Prostaglandin D2 receptor; Tissue microarray; Whole genomic oligonucleo tide microarray

Indexed keywords

BIGLYCAN; BIOLOGICAL MARKER; COLLAGEN; COLLAGEN TYPE 4; COLLAGEN TYPE 4 ALPHA 1; MATRIX PROTEIN; MESSENGER RNA; OSTEONECTIN; PROSTAGLANDIN D2; PROSTAGLANDIN RECEPTOR; UNCLASSIFIED DRUG; VON WILLEBRAND FACTOR;

EID: 58149379486     PISSN: 15705870     EISSN: None     Source Type: Journal    
DOI: 10.1155/2009/890349     Document Type: Article
Times cited : (50)

References (42)
  • 1
    • 0037012338 scopus 로고    scopus 로고
    • Osteopontin identified as lead marker of colon cancer progression, using pooled sample expression profiling
    • D. Agrawal, T. Chen, R. Irby et al., Osteopontin identified as lead marker of colon cancer progression, using pooled sample expression profiling, J. Natl. Cancer Inst. 94 (2002), 513-521.
    • (2002) J. Natl. Cancer Inst , vol.94 , pp. 513-521
    • Agrawal, D.1    Chen, T.2    Irby, R.3
  • 2
    • 85184364932 scopus 로고    scopus 로고
    • D.J. Best and P.G. Gipps, Algorithm AS 71: The upper tail probabilities of Kendall's tau applied statistics, Appl. Statist. 23 (1974), 98-100.
    • D.J. Best and P.G. Gipps, Algorithm AS 71: The upper tail probabilities of Kendall's tau applied statistics, Appl. Statist. 23 (1974), 98-100.
  • 3
    • 14544292891 scopus 로고    scopus 로고
    • Differential gene expression in colon cancer of the caecum versus the sigmoid and rectosigmoid
    • K. Birkenkamp-Demtroder, S.H. Olesen, F.B. Sorensen et al., Differential gene expression in colon cancer of the caecum versus the sigmoid and rectosigmoid, Gut 54 (2005), 374-384.
    • (2005) Gut , vol.54 , pp. 374-384
    • Birkenkamp-Demtroder, K.1    Olesen, S.H.2    Sorensen, F.B.3
  • 4
    • 33748896397 scopus 로고    scopus 로고
    • KRAS, p53 and BRAF gene mutations and aneuploidy in sporadic colorectal cancer progression
    • D. Calistri, C. Rengucci, I. Seymour et al., KRAS, p53 and BRAF gene mutations and aneuploidy in sporadic colorectal cancer progression, Cell. Oncol. 28 (2006), 161-166.
    • (2006) Cell. Oncol , vol.28 , pp. 161-166
    • Calistri, D.1    Rengucci, C.2    Seymour, I.3
  • 6
    • 34249793696 scopus 로고    scopus 로고
    • Possible novel receptor for PGD2 on human bronchial epithelial cells
    • T. Chiba, A. Kanda, S. Ueki et al., Possible novel receptor for PGD2 on human bronchial epithelial cells, Int. Arch. Allergy Immunol. 143(Suppl. 1) (2007), 23-27.
    • (2007) Int. Arch. Allergy Immunol , vol.143 , Issue.SUPPL. 1 , pp. 23-27
    • Chiba, T.1    Kanda, A.2    Ueki, S.3
  • 7
    • 21344470901 scopus 로고    scopus 로고
    • Common denominator genes that distinguish colorectal carcinoma from normal mucosa
    • R.S. Croner, T. Foertsch, W.M. Brueckl et al., Common denominator genes that distinguish colorectal carcinoma from normal mucosa, Int. J. Colorectal Dis. 20 (2005), 353-362.
    • (2005) Int. J. Colorectal Dis , vol.20 , pp. 353-362
    • Croner, R.S.1    Foertsch, T.2    Brueckl, W.M.3
  • 8
  • 9
    • 33845607724 scopus 로고    scopus 로고
    • Promoter methylation precedes chromosomal alterations in colorectal cancer development
    • S. Derks, C. Postma, P.T. Moerkerk et al., Promoter methylation precedes chromosomal alterations in colorectal cancer development, Cell. Oncol. 28 (2006), 247-257.
    • (2006) Cell. Oncol , vol.28 , pp. 247-257
    • Derks, S.1    Postma, C.2    Moerkerk, P.T.3
  • 10
    • 1442357042 scopus 로고    scopus 로고
    • The functional cobalamin (vitamin B12)-intrinsic factor receptor is a novel complex of cubilin and amnionless
    • J.C. Fyfe, M. Madsen, P. Højrup et al., The functional cobalamin (vitamin B12)-intrinsic factor receptor is a novel complex of cubilin and amnionless, Blood 103 (2004), 1573-1579.
    • (2004) Blood , vol.103 , pp. 1573-1579
    • Fyfe, J.C.1    Madsen, M.2    Højrup, P.3
  • 11
    • 50249185512 scopus 로고    scopus 로고
    • Inflammation, adenoma and cancer: Objective classification of colon biopsy specimens with gene expression signature
    • O. Galamb, B. Gyorffy, F. Sipos et al., Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature, Dis. Markers 25 (2008), 1-16.
    • (2008) Dis. Markers , vol.25 , pp. 1-16
    • Galamb, O.1    Gyorffy, B.2    Sipos, F.3
  • 12
    • 33751548487 scopus 로고    scopus 로고
    • mRNA expression, functional profiling and multivariate classification of colon biopsy specimen by cDNA overall glass microarray
    • O. Galamb, F. Sipos, E. Dinya et al., mRNA expression, functional profiling and multivariate classification of colon biopsy specimen by cDNA overall glass microarray, World J. Gastroenterol. 12 (2006), 6998-7006.
    • (2006) World J. Gastroenterol , vol.12 , pp. 6998-7006
    • Galamb, O.1    Sipos, F.2    Dinya, E.3
  • 13
    • 27644578099 scopus 로고    scopus 로고
    • The results of the expression array studies correlate and enhance the known genetic basis of gastric and colorectal cancer
    • O. Galamb, F. Sipos, K. Fischer et al., The results of the expression array studies correlate and enhance the known genetic basis of gastric and colorectal cancer, Cytometry B Clin. Cytom. 68 (2005), 1-17.
    • (2005) Cytometry B Clin. Cytom , vol.68 , pp. 1-17
    • Galamb, O.1    Sipos, F.2    Fischer, K.3
  • 14
    • 35748965309 scopus 로고    scopus 로고
    • Evaluation of malignant and benign gastric biopsy specimens by mRNA expression profile and multivariate statistical methods
    • O. Galamb, F. Sipos, B. Molnar et al., Evaluation of malignant and benign gastric biopsy specimens by mRNA expression profile and multivariate statistical methods, Cytometry B Clin. Cytom. 72 (2007), 299-309.
    • (2007) Cytometry B Clin. Cytom , vol.72 , pp. 299-309
    • Galamb, O.1    Sipos, F.2    Molnar, B.3
  • 15
    • 7444260919 scopus 로고    scopus 로고
    • Vascular endothelial growth factor in colorectal cancer
    • M. Guba, H. Seeliger, A. Kleespies et al., Vascular endothelial growth factor in colorectal cancer, Int. J. Colorectal Dis. 19 (2004), 510-517.
    • (2004) Int. J. Colorectal Dis , vol.19 , pp. 510-517
    • Guba, M.1    Seeliger, H.2    Kleespies, A.3
  • 16
    • 2542446266 scopus 로고    scopus 로고
    • Expression of prostaglandin D2 receptors DP1 and DP2 by human colorectal cancer cells
    • G. Hawcroft, S.H. Gardner and M.A. Hull, Expression of prostaglandin D2 receptors DP1 and DP2 by human colorectal cancer cells, Cancer Lett. 210 (2004), 81-84.
    • (2004) Cancer Lett , vol.210 , pp. 81-84
    • Hawcroft, G.1    Gardner, S.H.2    Hull, M.A.3
  • 17
    • 34547863893 scopus 로고    scopus 로고
    • Independent induction of caspase-8 and cFLIP expression during colorectal carcinogenesis in sporadic and HNPCC adenomas and carcinomas
    • D.M. Heijink, J.H. Kleibeuker, M. Jalving et al., Independent induction of caspase-8 and cFLIP expression during colorectal carcinogenesis in sporadic and HNPCC adenomas and carcinomas, Cell. Oncol. 29 (2007), 409-419.
    • (2007) Cell. Oncol , vol.29 , pp. 409-419
    • Heijink, D.M.1    Kleibeuker, J.H.2    Jalving, M.3
  • 18
    • 0036156756 scopus 로고    scopus 로고
    • Total levels of tissue inhibitor of metalloproteinases 1 in plasma yield high diagnostic sensitivity and specificity in patients with colon cancer
    • M.N. Holten-Andersen, I.J. Christensen, H.J. Nielsen et al., Total levels of tissue inhibitor of metalloproteinases 1 in plasma yield high diagnostic sensitivity and specificity in patients with colon cancer, Clin. Cancer Res. 8 (2002), 156-164.
    • (2002) Clin. Cancer Res , vol.8 , pp. 156-164
    • Holten-Andersen, M.N.1    Christensen, I.J.2    Nielsen, H.J.3
  • 19
    • 0035065591 scopus 로고    scopus 로고
    • The amnionless gene, essential for mouse gastrulation, encodes a visceral-endoderm-specific protein with an extracellular cysteine-rich domain
    • S. Kalantry, S. Manning, O. Haub et al., The amnionless gene, essential for mouse gastrulation, encodes a visceral-endoderm-specific protein with an extracellular cysteine-rich domain, Nat. Genet. 27 (2001), 351-352.
    • (2001) Nat. Genet , vol.27 , pp. 351-352
    • Kalantry, S.1    Manning, S.2    Haub, O.3
  • 20
    • 21444458194 scopus 로고    scopus 로고
    • Synchronous global assessment of gene and protein expression in colorectal cancer progression
    • K.Y. Kwong, G.C. Bloom, I. Yang et al., Synchronous global assessment of gene and protein expression in colorectal cancer progression, Genomics 86 (2005), 142-158.
    • (2005) Genomics , vol.86 , pp. 142-158
    • Kwong, K.Y.1    Bloom, G.C.2    Yang, I.3
  • 21
    • 34447574683 scopus 로고    scopus 로고
    • Differential expression in normal-adenoma-carcinoma sequence suggests complex molecular carcinogenesis in colon
    • S. Lee, Bang, K. Song et al., Differential expression in normal-adenoma-carcinoma sequence suggests complex molecular carcinogenesis in colon, Oncol. Rep. 16 (2006), 747-754.
    • (2006) Oncol. Rep , vol.16 , pp. 747-754
    • Lee, S.1    Bang2    Song, K.3
  • 22
    • 0036063069 scopus 로고    scopus 로고
    • The colorectal adenoma-carcinoma sequence
    • A. Leslie, F.A. Carey, N.R. Pratt et al., The colorectal adenoma-carcinoma sequence, Br. J. Surg. 89 (2002), 845-860.
    • (2002) Br. J. Surg , vol.89 , pp. 845-860
    • Leslie, A.1    Carey, F.A.2    Pratt, N.R.3
  • 23
    • 4043132492 scopus 로고    scopus 로고
    • Genes associated with liver metastasis of colon cancer, identified by genome-wide cDNA microarray
    • M. Li, Y.M. Lin, S. Hasegawa et al., Genes associated with liver metastasis of colon cancer, identified by genome-wide cDNA microarray, Int. J. Oncol. 24 (2004), 305-312.
    • (2004) Int. J. Oncol , vol.24 , pp. 305-312
    • Li, M.1    Lin, Y.M.2    Hasegawa, S.3
  • 24
    • 0037071875 scopus 로고    scopus 로고
    • Molecular diagnosis of colorectal tumors by expression profiles of 50 genes expressed differentially in adenomas and carcinomas
    • Y.M. Lin, Y. Furukawa, T. Tsunoda et al., Molecular diagnosis of colorectal tumors by expression profiles of 50 genes expressed differentially in adenomas and carcinomas, Oncogene 21 (2002), 4120-4128.
    • (2002) Oncogene , vol.21 , pp. 4120-4128
    • Lin, Y.M.1    Furukawa, Y.2    Tsunoda, T.3
  • 25
    • 33750420839 scopus 로고    scopus 로고
    • The strucplot framework: Visualizing multi-way contingency tables with 'vcd'
    • D. Meyer, A. Zeileis and K. Hornik, The strucplot framework: Visualizing multi-way contingency tables with 'vcd', J. Stac. Software 17 (2006), 1-48.
    • (2006) J. Stac. Software , vol.17 , pp. 1-48
    • Meyer, D.1    Zeileis, A.2    Hornik, K.3
  • 26
    • 30444447791 scopus 로고    scopus 로고
    • Differential expression of Janus kinase 3 (JAK3), matrix metalloproteinase 13 (MMP13), heat shock protein 60 (HSP60), and mouse double minute 2 (MDM2) in human colorectal cancer progression using human cancer cDNA microarrays
    • D. Mori, Y. Nakafus, K. Miyazaki et al., Differential expression of Janus kinase 3 (JAK3), matrix metalloproteinase 13 (MMP13), heat shock protein 60 (HSP60), and mouse double minute 2 (MDM2) in human colorectal cancer progression using human cancer cDNA microarrays, Pathol. Res. Pract. 201 (2005), 777-789.
    • (2005) Pathol. Res. Pract , vol.201 , pp. 777-789
    • Mori, D.1    Nakafus, Y.2    Miyazaki, K.3
  • 27
    • 18044373031 scopus 로고    scopus 로고
    • Gene expression profiling of colorectal adenomas and early invasive carcinomas by cDNA array analysis
    • K. Nosho, H. Yamamoto, Y. Adachi et al., Gene expression profiling of colorectal adenomas and early invasive carcinomas by cDNA array analysis, Br. J. Cancer 92 (2005), 1193-1200.
    • (2005) Br. J. Cancer , vol.92 , pp. 1193-1200
    • Nosho, K.1    Yamamoto, H.2    Adachi, Y.3
  • 28
    • 20244386843 scopus 로고    scopus 로고
    • A case of colorectal carcinoma in adenoma analyzed by a cDNA array
    • K. Nosho, H. Yamamoto, H. Takamaru et al., A case of colorectal carcinoma in adenoma analyzed by a cDNA array, Int. J. Colorectal Dis. 20 (2005), 287-291.
    • (2005) Int. J. Colorectal Dis , vol.20 , pp. 287-291
    • Nosho, K.1    Yamamoto, H.2    Takamaru, H.3
  • 29
    • 9744231436 scopus 로고    scopus 로고
    • Interplay of insulin-like growth factor-II, insulin-like growth factor-I, insulin-like growth factor-I receptor, COX-2, and matrix metalloproteinase-7, play key roles in the early stage of colorectal carcinogenesis
    • K. Nosho, H. Yamamoto, H. Taniguchi et al., Interplay of insulin-like growth factor-II, insulin-like growth factor-I, insulin-like growth factor-I receptor, COX-2, and matrix metalloproteinase-7, play key roles in the early stage of colorectal carcinogenesis, Clin. Cancer Res. 10 (2004), 7950-7957.
    • (2004) Clin. Cancer Res , vol.10 , pp. 7950-7957
    • Nosho, K.1    Yamamoto, H.2    Taniguchi, H.3
  • 30
    • 0035300437 scopus 로고    scopus 로고
    • Transcriptional gene expression profiles of colorectal adenoma, adenocarcinoma, and normal tissue examined by oligonucleotide arrays
    • D.A. Notterman, U. Alon, A.J. Sierk et al., Transcriptional gene expression profiles of colorectal adenoma, adenocarcinoma, and normal tissue examined by oligonucleotide arrays, Cancer Res. 61 (2001), 3124-3130.
    • (2001) Cancer Res , vol.61 , pp. 3124-3130
    • Notterman, D.A.1    Alon, U.2    Sierk, A.J.3
  • 31
    • 0030782774 scopus 로고    scopus 로고
    • The role of osteopontin in tumorigenesis and metastasis
    • A.J. Oates, R. Barraclough and P.S. Rudland, The role of osteopontin in tumorigenesis and metastasis, Inv. Metastasis 17 (1997), 1-15.
    • (1997) Inv. Metastasis , vol.17 , pp. 1-15
    • Oates, A.J.1    Barraclough, R.2    Rudland, P.S.3
  • 32
    • 0035116013 scopus 로고    scopus 로고
    • Gene expression analysis in colorectal cancer using practical DNA array filter
    • K. Okuno, M. Yasutomi, N. Nishimura et al., Gene expression analysis in colorectal cancer using practical DNA array filter, Dis. Colon Rectum 44 (2001), 295-299.
    • (2001) Dis. Colon Rectum , vol.44 , pp. 295-299
    • Okuno, K.1    Yasutomi, M.2    Nishimura, N.3
  • 33
    • 0027130137 scopus 로고
    • Molecular and cellular basis of genetic resistance to bacterial infection: The role of the early T-lymphocyte activation-1/osteopontin gene
    • R. Patarca, R.A. Saavedra and H. Cantor, Molecular and cellular basis of genetic resistance to bacterial infection: the role of the early T-lymphocyte activation-1/osteopontin gene, Crit. Rev. Immunol. 13 (1993), 225-246.
    • (1993) Crit. Rev. Immunol , vol.13 , pp. 225-246
    • Patarca, R.1    Saavedra, R.A.2    Cantor, H.3
  • 34
    • 0028952765 scopus 로고
    • Neoplastic progression of human colorectal cancer is associated with overexpression of the stromelysin-3 and BM-40/SPARC genes
    • H. Porte, E. Chastre, S. Prevot et al., Neoplastic progression of human colorectal cancer is associated with overexpression of the stromelysin-3 and BM-40/SPARC genes, Int. J. Cancer 64 (1995), 70-75.
    • (1995) Int. J. Cancer , vol.64 , pp. 70-75
    • Porte, H.1    Chastre, E.2    Prevot, S.3
  • 36
    • 85184363229 scopus 로고    scopus 로고
    • P. Schratl, J.F. Royer, E. Kostenis et al., The role of the prostaglandin D2 receptor, DP, in eosinophil trafficking, J. Immunol. 179 (2007), 4792-4799.
    • P. Schratl, J.F. Royer, E. Kostenis et al., The role of the prostaglandin D2 receptor, DP, in eosinophil trafficking, J. Immunol. 179 (2007), 4792-4799.
  • 37
    • 0035996510 scopus 로고    scopus 로고
    • Novel functions of the matricellular proteins osteopontin and osteonectin/SPARC
    • J. Sodek, B. Zhu, M.H. Huynh et al., Novel functions of the matricellular proteins osteopontin and osteonectin/SPARC, Connect. Tissue Res. 43 (2002), 308-319.
    • (2002) Connect. Tissue Res , vol.43 , pp. 308-319
    • Sodek, J.1    Zhu, B.2    Huynh, M.H.3
  • 38
    • 0034812459 scopus 로고    scopus 로고
    • Construction of preferential cDNA microarray specialized for human colorectal carcinoma: Molecular sketch of colorectal cancer
    • I. Takemasa, H. Higuchi, H. Yamamoto et al., Construction of preferential cDNA microarray specialized for human colorectal carcinoma: molecular sketch of colorectal cancer, Biochem. Biophys. Res. Commun. 285 (2001), 1244-1249.
    • (2001) Biochem. Biophys. Res. Commun , vol.285 , pp. 1244-1249
    • Takemasa, I.1    Higuchi, H.2    Yamamoto, H.3
  • 39
    • 1542290446 scopus 로고    scopus 로고
    • Expression profiling-best practices for data generation and interpretation in clinical trials
    • Tumor Analysis Best Practices Working Group
    • Tumor Analysis Best Practices Working Group, Expression profiling-best practices for data generation and interpretation in clinical trials, Nat. Rev. Genet. 5 (2004), 229-237.
    • (2004) Nat. Rev. Genet , vol.5 , pp. 229-237
  • 41
    • 0023748414 scopus 로고
    • Genetic alterations during colorectal-tumor development
    • B. Vogelstein, E.R. Fearon, S.R. Hamilton et al., Genetic alterations during colorectal-tumor development, N. Engl. J. Med. 319 (1988), 525-532.
    • (1988) N. Engl. J. Med , vol.319 , pp. 525-532
    • Vogelstein, B.1    Fearon, E.R.2    Hamilton, S.R.3
  • 42
    • 33750741945 scopus 로고    scopus 로고
    • GROalpha is highly expressed in adenocarcinoma of the colon and down-regulates fibulin-1
    • Y. Wen, S.F. Giardina, D. Hamming et al., GROalpha is highly expressed in adenocarcinoma of the colon and down-regulates fibulin-1, Clin. Cancer Res. 12 (2006), 5951-5959.
    • (2006) Clin. Cancer Res , vol.12 , pp. 5951-5959
    • Wen, Y.1    Giardina, S.F.2    Hamming, D.3


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