-
1
-
-
0017888990
-
Unusual solution properties of proline and its interaction with proteins
-
Schobert, B., and H. Tschesche. 1978. Unusual solution properties of proline and its interaction with proteins. Biochim. Biophys. Acta. 541:270-277.
-
(1978)
Biochim. Biophys. Acta
, vol.541
, pp. 270-277
-
-
Schobert, B.1
Tschesche, H.2
-
2
-
-
0346880116
-
Perturbation of folding and reassociation of lactate dehydrogenase by proline and trimethylamine oxide
-
Chilson, O. P., and A. E. Chilson. 2003. Perturbation of folding and reassociation of lactate dehydrogenase by proline and trimethylamine oxide. Eur. J. Biochem. 270:4823-4834.
-
(2003)
Eur. J. Biochem
, vol.270
, pp. 4823-4834
-
-
Chilson, O.P.1
Chilson, A.E.2
-
3
-
-
0017390347
-
Anomalous colligative properties of proline
-
Schobert, B. 1977. Anomalous colligative properties of proline. Naturwissenschaften. 64:386-387.
-
(1977)
Naturwissenschaften
, vol.64
, pp. 386-387
-
-
Schobert, B.1
-
4
-
-
0022779334
-
A calorimetric and infrared spectroscopic study of the stabilizing solute proline
-
Rudolph, A. S., and J. H. Crowe. 1986. A calorimetric and infrared spectroscopic study of the stabilizing solute proline. Biophys. J. 50:423-430.
-
(1986)
Biophys. J
, vol.50
, pp. 423-430
-
-
Rudolph, A.S.1
Crowe, J.H.2
-
5
-
-
9244263009
-
The chemical chaperone proline relieves the thermosensitivity of a DnaK deletion mutant at 42°C
-
Chattopadhyay, M. K. 2004. The chemical chaperone proline relieves the thermosensitivity of a DnaK deletion mutant at 42°C. J. Bacteriol. 186:8149-8152.
-
(2004)
J. Bacteriol
, vol.186
, pp. 8149-8152
-
-
Chattopadhyay, M.K.1
-
6
-
-
0037224715
-
L-proline accumulation and freeze tolerance in Saccharomyces cerevisiae are caused by a mutation in the PRO1 gene encoding γ-glutamyl kinase
-
Morita, Y., S. Nakamori, and H. Takagi. 2003. L-proline accumulation and freeze tolerance in Saccharomyces cerevisiae are caused by a mutation in the PRO1 gene encoding γ-glutamyl kinase. Appl. Environ. Microbiol. 69:212-219.
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 212-219
-
-
Morita, Y.1
Nakamori, S.2
Takagi, H.3
-
7
-
-
0007362845
-
Cold-acclimation of alfalfa (Medicago-media Pers.) under field conditions. 1. Variations of the free proline content of leaves and crowns
-
Paquin, R., and G. Pelletier. 1981. Cold-acclimation of alfalfa (Medicago-media Pers.) under field conditions. 1. Variations of the free proline content of leaves and crowns. Physiol. Veg. 19:103-117.
-
(1981)
Physiol. Veg
, vol.19
, pp. 103-117
-
-
Paquin, R.1
Pelletier, G.2
-
8
-
-
0000937182
-
Solute accumulation and compartmentation during the cold-acclimation of Puma rye
-
Koster, K. L., and D. V. Lynch. 1992. Solute accumulation and compartmentation during the cold-acclimation of Puma rye. Plant Physiol. 98:108-113.
-
(1992)
Plant Physiol
, vol.98
, pp. 108-113
-
-
Koster, K.L.1
Lynch, D.V.2
-
9
-
-
0033015073
-
Proline synthesis and degradation: A model system for elucidating stress-related signal transduction
-
Hare, P., W. Cress, and J. van Staden. 1999. Proline synthesis and degradation: a model system for elucidating stress-related signal transduction. J. Exp. Bot. 50:413-434.
-
(1999)
J. Exp. Bot
, vol.50
, pp. 413-434
-
-
Hare, P.1
Cress, W.2
van Staden, J.3
-
10
-
-
0032693585
-
Antisense suppression of proline degradation improves tolerance to freezing and salinity in Arabidopsis thaliana
-
Nanjo, T., Y. Kobayashi, Y. Yoshiba, K. Kakubari, K. Yamaguchi-Shinozaki, and K. Shinozaki. 1999. Antisense suppression of proline degradation improves tolerance to freezing and salinity in Arabidopsis thaliana. FEBS Lett. 461:205-210.
-
(1999)
FEBS Lett
, vol.461
, pp. 205-210
-
-
Nanjo, T.1
Kobayashi, Y.2
Yoshiba, Y.3
Kakubari, K.4
Yamaguchi-Shinozaki, K.5
Shinozaki, K.6
-
11
-
-
0031259053
-
Regulation of levels of proline as an osmolyte in plants under water stress
-
Yoshiba, Y., T. Kiyosue, K. Nakashima, K. Yamaguchi-Shinozaki, and K. Shinozaki. 1997. Regulation of levels of proline as an osmolyte in plants under water stress. Plant Cell Physiol. 38:1095-1102.
-
(1997)
Plant Cell Physiol
, vol.38
, pp. 1095-1102
-
-
Yoshiba, Y.1
Kiyosue, T.2
Nakashima, K.3
Yamaguchi-Shinozaki, K.4
Shinozaki, K.5
-
12
-
-
0033846083
-
Proline inhibits aggregation during protein refolding
-
Samuel, D., T. K. S. Kumar, G. Ganesh, G. Jayaraman, P. W. Yang, M. M. Chang, V. D. Trivedi, S. L. Wang, K. C. Hwang, D. K. Chang, and C. Yu. 2000. Proline inhibits aggregation during protein refolding. Protein Sci. 9:1604.
-
(2000)
Protein Sci
, vol.9
, pp. 1604
-
-
Samuel, D.1
Kumar, T.K.S.2
Ganesh, G.3
Jayaraman, G.4
Yang, P.W.5
Chang, M.M.6
Trivedi, V.D.7
Wang, S.L.8
Hwang, K.C.9
Chang, D.K.10
Yu, C.11
-
13
-
-
34249074690
-
Structure and hydration of L-proline in aqueous solutions
-
McLain, S. E., A. K. Soper, A. E. Terry, and A. Watts. 2007. Structure and hydration of L-proline in aqueous solutions. J. Phys. Chem. B. 111:4568-4580.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 4568-4580
-
-
McLain, S.E.1
Soper, A.K.2
Terry, A.E.3
Watts, A.4
-
14
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell, A., D. Bashford, M. Bellott, R. Dunbrack, J. Evanseck, M. Field, S. Fischer, J. Gao, H. Guo, S. Ha, D. Joseph-McCarthy, L. Kuchnir, K. Kuczera, F. Lau, C. Mattos, S. Michnick, T. Ngo, D. Nguyen, B. Prodhom, W. Reiher, B. Roux, M. Schlenkrich, J. Smith, R. Stote, J. Straub, M. Watanabe, J. Wiorkiewicz-Kuczera, D. Yin, and M. Karplus. 1998. All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B. 102:3586-3616.
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
MacKerell, A.1
Bashford, D.2
Bellott, M.3
Dunbrack, R.4
Evanseck, J.5
Field, M.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph-McCarthy, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.18
Prodhom, B.19
Reiher, W.20
Roux, B.21
Schlenkrich, M.22
Smith, J.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiorkiewicz-Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
15
-
-
46449133375
-
Molecular mechanisms of cryoprotection in aqueous proline: Light scattering and molecular dynamics simulations
-
Troitzsch R. Z., H. Vass, W. Hossack, G. J. Martyna, and J. Crain. 2008. Molecular mechanisms of cryoprotection in aqueous proline: light scattering and molecular dynamics simulations. J. Phys. Chem. B. 112:4290-4297.
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 4290-4297
-
-
Troitzsch, R.Z.1
Vass, H.2
Hossack, W.3
Martyna, G.J.4
Crain, J.5
-
16
-
-
34547498702
-
Structure of aqueous proline via parallel tempering molecular dynamics and neutron diffraction
-
Troitzsch, R., G. Martyna, S. E. McLain, A. K. Soper, and J. Crain. 2007. Structure of aqueous proline via parallel tempering molecular dynamics and neutron diffraction. J. Phys. Chem. B. 111:8210-8222.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 8210-8222
-
-
Troitzsch, R.1
Martyna, G.2
McLain, S.E.3
Soper, A.K.4
Crain, J.5
-
17
-
-
0035840770
-
Tests of the empirical potential structure refinement method and a new method of application to neutron diffraction data on water
-
Soper, A. K. 2001. Tests of the empirical potential structure refinement method and a new method of application to neutron diffraction data on water. Mol. Phys. 99:1503-1516.
-
(2001)
Mol. Phys
, vol.99
, pp. 1503-1516
-
-
Soper, A.K.1
-
18
-
-
4243606192
-
Unified approach for molecular dynamics and density-functional theory
-
Car, R., and M. Parrinello. 1985. Unified approach for molecular dynamics and density-functional theory. Phys. Rev. Lett. 55:2471-2474.
-
(1985)
Phys. Rev. Lett
, vol.55
, pp. 2471-2474
-
-
Car, R.1
Parrinello, M.2
-
19
-
-
40749125697
-
Fine-grained parallelization of the Car-Parrinello ab initio molecular dynamics method on the IBM Blue Gene/L supercomputer
-
Bohm, E., A. Bhatele, L. V. Kale, M. E. Tuckerman, S. Kumar, J. A. Gunnells, and G. J. Martyna. 2007. Fine-grained parallelization of the Car-Parrinello ab initio molecular dynamics method on the IBM Blue Gene/L supercomputer. IBM J. Res. Dev. 52:159-175.
-
(2007)
IBM J. Res. Dev
, vol.52
, pp. 159-175
-
-
Bohm, E.1
Bhatele, A.2
Kale, L.V.3
Tuckerman, M.E.4
Kumar, S.5
Gunnells, J.A.6
Martyna, G.J.7
-
20
-
-
9244232284
-
Scalable fine-grained parallelization of plane-wave-based ab initio molecular dynamics for large supercomputers
-
Vadali, R., Y. Shi, S. Kumar, L. V. Kale, M. E. Tuckerman, and G. J. Martyna. 2004. Scalable fine-grained parallelization of plane-wave-based ab initio molecular dynamics for large supercomputers. J. Comp. Chem. 25:2006.
-
(2004)
J. Comp. Chem
, vol.25
-
-
Vadali, R.1
Shi, Y.2
Kumar, S.3
Kale, L.V.4
Tuckerman, M.E.5
Martyna, G.J.6
-
21
-
-
4243553426
-
Density-functional exchange-energy approximation with correct asymptotic behavior
-
Becke, A. D. 1988. Density-functional exchange-energy approximation with correct asymptotic behavior. Phys. Rev. A. 38:3098-3100.
-
(1988)
Phys. Rev. A
, vol.38
, pp. 3098-3100
-
-
Becke, A.D.1
-
22
-
-
0345491105
-
Development of the Colle-Salvetti correlation-energy formula into a functional the electron-density
-
Lee, C. T., W. T. Yang, and R. G. Parr. 1988. Development of the Colle-Salvetti correlation-energy formula into a functional the electron-density. Phys. Rev. B. 37:785-789.
-
(1988)
Phys. Rev. B
, vol.37
, pp. 785-789
-
-
Lee, C.T.1
Yang, W.T.2
Parr, R.G.3
-
23
-
-
33645426115
-
Efficient pseudopotentials for plane-wave calculations
-
Troullier, N., and J. L. Martins. 1991. Efficient pseudopotentials for plane-wave calculations. Phys. Rev. B. 43:1993.
-
(1991)
Phys. Rev. B
, vol.43
-
-
Troullier, N.1
Martins, J.L.2
-
24
-
-
0000026966
-
Explicit reversible integrators for extended systems dynamics
-
Martyna, G. J., M. Tuckerman, D. J. Tobias, and M. L. Klein. 1996. Explicit reversible integrators for extended systems dynamics. Mol. Phys. 87:1117-1157.
-
(1996)
Mol. Phys
, vol.87
, pp. 1117-1157
-
-
Martyna, G.J.1
Tuckerman, M.2
Tobias, D.J.3
Klein, M.L.4
-
25
-
-
36449000062
-
Nosé-Hoover chains - the canonical ensemble via continuous dynamics
-
Martyna, G. J., M. L. Klein, and M. Tuckerman. 1992. Nosé-Hoover chains - the canonical ensemble via continuous dynamics. J. Chem. Phys. 97:2635-2643.
-
(1992)
J. Chem. Phys
, vol.97
, pp. 2635-2643
-
-
Martyna, G.J.1
Klein, M.L.2
Tuckerman, M.3
-
26
-
-
0000251219
-
Integrating the Car-Parrinello equations. 1. Basic integration techniques
-
Tuckerman, M. E., and M. Parrinello. 1994. Integrating the Car-Parrinello equations. 1. Basic integration techniques. J. Chem. Phys. 101:1302-1315.
-
(1994)
J. Chem. Phys
, vol.101
, pp. 1302-1315
-
-
Tuckerman, M.E.1
Parrinello, M.2
-
27
-
-
0000230077
-
Integrating the Car-Parrinello equations. 2. Multiple time-scale techniques
-
Tuckerman, M. E., and M. Parrinello. 1994. Integrating the Car-Parrinello equations. 2. Multiple time-scale techniques. J. Chem. Phys. 101:1316-1329.
-
(1994)
J. Chem. Phys
, vol.101
, pp. 1316-1329
-
-
Tuckerman, M.E.1
Parrinello, M.2
-
28
-
-
0000948202
-
Integrating the Car-Parrinello equations. 3. Techniques for ultrasoft pseudopotentials
-
Hutter, J., M. Tuckerman, and M. Parrinello. 1995. Integrating the Car-Parrinello equations. 3. Techniques for ultrasoft pseudopotentials. J. Chem. Phys. 102:859-871.
-
(1995)
J. Chem. Phys
, vol.102
, pp. 859-871
-
-
Hutter, J.1
Tuckerman, M.2
Parrinello, M.3
-
29
-
-
0038707540
-
Chemometric study of liquid water simulations. I. The parameters of the TIP4P model potential
-
Hernandes, M. Z., J. B. P. da Silva, and R. L. Longo. 2003. Chemometric study of liquid water simulations. I. The parameters of the TIP4P model potential. J. Comp. Chem. 24:973-981.
-
(2003)
J. Comp. Chem
, vol.24
, pp. 973-981
-
-
Hernandes, M.Z.1
da Silva, J.B.P.2
Longo, R.L.3
-
30
-
-
0000790755
-
van der Waals energies in density functional theory
-
Kohn, W., Y. Meir, and D. Makarov. 1998. van der Waals energies in density functional theory. Phys. Rev. Lett. 80:4153-4156.
-
(1998)
Phys. Rev. Lett
, vol.80
, pp. 4153-4156
-
-
Kohn, W.1
Meir, Y.2
Makarov, D.3
-
31
-
-
1542396762
-
Dispersion corrections to density functionals for water aromatic interactions
-
Zimmerli, U., M. Parrinello, and P. Koumoutsakos. 2004. Dispersion corrections to density functionals for water aromatic interactions. J. Chem. Phys. 120:2693-2699.
-
(2004)
J. Chem. Phys
, vol.120
, pp. 2693-2699
-
-
Zimmerli, U.1
Parrinello, M.2
Koumoutsakos, P.3
-
32
-
-
40049090139
-
Scalable molecular dynamics with NAMD on the IBM Blue Gene/L system
-
Kumar, S., C. Huang, G. Zheng, E. Bohm, A. Bhatele, J. C. Phillips, H. Yu, and L. V. Kalé. 2007. Scalable molecular dynamics with NAMD on the IBM Blue Gene/L system. IBM J. Res. Dev. 52:177-188.
-
(2007)
IBM J. Res. Dev
, vol.52
, pp. 177-188
-
-
Kumar, S.1
Huang, C.2
Zheng, G.3
Bohm, E.4
Bhatele, A.5
Phillips, J.C.6
Yu, H.7
Kalé, L.V.8
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