메뉴 건너뛰기




Volumn 180, Issue 2, 2008, Pages 1095-1105

A two-stage pruning algorithm for likelihood computation for a population tree

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ALLELE; ARTICLE; MAXIMUM LIKELIHOOD METHOD; PLANT GENETICS; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; TREE PRUNING; MOLECULAR EVOLUTION; POPULATION GENETICS; STATISTICAL MODEL; STATISTICS;

EID: 58149357704     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.107.085753     Document Type: Article
Times cited : (40)

References (20)
  • 1
    • 0014082615 scopus 로고
    • Phylogenetic analysis. Models and estimation procedures
    • CAVALLI-SFORZA, L. L., and A. W. F. EDWARDS, 1967 Phylogenetic analysis. Models and estimation procedures. Am. J. Hum. Genet. 19: 233-257.
    • (1967) Am. J. Hum. Genet , vol.19 , pp. 233-257
    • CAVALLI-SFORZA, L.L.1    EDWARDS, A.W.F.2
  • 3
    • 0002619979 scopus 로고
    • Reconstruction of evolutionary trees in phenetic and phylogenetic classifications
    • EDWARDS, A. W. F., and L. L. CAVALLI-SFORZA, 1964 Reconstruction of evolutionary trees in phenetic and phylogenetic classifications. Syst. Assoc. Publ. 6: 67-76.
    • (1964) Syst. Assoc. Publ , vol.6 , pp. 67-76
    • EDWARDS, A.W.F.1    CAVALLI-SFORZA, L.L.2
  • 4
    • 0015183542 scopus 로고
    • A general model for the analysis of pedigree data
    • ELSTON, R. C., and J. STEWART, 1971 A general model for the analysis of pedigree data. Hum. Hered. 21: 523-542.
    • (1971) Hum. Hered , vol.21 , pp. 523-542
    • ELSTON, R.C.1    STEWART, J.2
  • 6
    • 84959848780 scopus 로고
    • Maximum likelihood and minimum-steps methods for estimating evolutionary trees from data on discrete characters
    • FELSENSTEIN, J., 1973a Maximum likelihood and minimum-steps methods for estimating evolutionary trees from data on discrete characters. Syst. Zool. 22: 240-249.
    • (1973) Syst. Zool , vol.22 , pp. 240-249
    • FELSENSTEIN, J.1
  • 7
    • 0015808083 scopus 로고
    • Maximum-likelihood estimation of evolutionary trees from continuous characters
    • FELSENSTEIN, J., 1973b Maximum-likelihood estimation of evolutionary trees from continuous characters. Am. J. Hum. Genet. 25: 471-492.
    • (1973) Am. J. Hum. Genet , vol.25 , pp. 471-492
    • FELSENSTEIN, J.1
  • 8
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • FELSENSTEIN, J., 1981 Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17: 368-376.
    • (1981) J. Mol. Evol , vol.17 , pp. 368-376
    • FELSENSTEIN, J.1
  • 10
    • 0003081588 scopus 로고
    • The Steiner problem in phylogeny is np-complete
    • FOULDS, L. R., and R. L. GRAHAM, 1982 The Steiner problem in phylogeny is np-complete. Adv. Appl. Math. 3: 43-49.
    • (1982) Adv. Appl. Math , vol.3 , pp. 43-49
    • FOULDS, L.R.1    GRAHAM, R.L.2
  • 11
    • 0020308198 scopus 로고
    • Unlikelihood that minimum phylogenies for a realistic biological study can be constructed in reasonable computational time
    • GRAHAM, R. L., and L. R. FOULDS, 1982 Unlikelihood that minimum phylogenies for a realistic biological study can be constructed in reasonable computational time. Math. Biosci. 60: 133-142.
    • (1982) Math. Biosci , vol.60 , pp. 133-142
    • GRAHAM, R.L.1    FOULDS, L.R.2
  • 12
    • 0015464914 scopus 로고
    • PEDIG - a computer program for calculation of genotype probabilities, using phenotypic information
    • HEUCH, I., and F. M. H. LI, 1972 PEDIG - a computer program for calculation of genotype probabilities, using phenotypic information. Clin. Genet. 3: 501-504.
    • (1972) Clin. Genet , vol.3 , pp. 501-504
    • HEUCH, I.1    LI, F.M.H.2
  • 13
    • 84984302738 scopus 로고
    • GENEX - an algebraic approach to pedigree probability calculus
    • HILDEN, J., 1970 GENEX - an algebraic approach to pedigree probability calculus. Clin. Genet. 1: 319-348.
    • (1970) Clin. Genet , vol.1 , pp. 319-348
    • HILDEN, J.1
  • 15
    • 0034124688 scopus 로고    scopus 로고
    • Likelihood analysis of ongoing gene flow and historical association
    • NIELSEN, R., and M. SLATKIN, 2000 Likelihood analysis of ongoing gene flow and historical association. Evolution 54: 44-50.
    • (2000) Evolution , vol.54 , pp. 44-50
    • NIELSEN, R.1    SLATKIN, M.2
  • 16
    • 0031879154 scopus 로고    scopus 로고
    • Maximum likelihood estimation of population divergence times and population phylogeny in models without mutation
    • NIELSEN, R., J. L. MOUNTAIN, J. P. HUELSENBECK and M. SLATKIN, 1998 Maximum likelihood estimation of population divergence times and population phylogeny in models without mutation. Evolution 52: 669-677.
    • (1998) Evolution , vol.52 , pp. 669-677
    • NIELSEN, R.1    MOUNTAIN, J.L.2    HUELSENBECK, J.P.3    SLATKIN, M.4
  • 17
    • 0022390691 scopus 로고
    • Gene genealogy and variance of interpopulational nucleotide differences
    • TAKAHATA, N., and M. NEI, 1985 Gene genealogy and variance of interpopulational nucleotide differences. Genetics 110: 325-344.
    • (1985) Genetics , vol.110 , pp. 325-344
    • TAKAHATA, N.1    NEI, M.2
  • 19
    • 0037250403 scopus 로고    scopus 로고
    • past, present and future
    • 2003 The SNP Consortium website
    • THORISSON, G. A., and L. D. STEIN, 2003 The SNP Consortium website: past, present and future. Nucleic Acids Res. 31: 124-127.
    • Nucleic Acids Res , vol.31 , pp. 124-127
    • THORISSON, G.A.1    STEIN, L.D.2
  • 20
    • 0001771498 scopus 로고
    • Evolution in Mendelian populations
    • WRIGHT, S., 1931 Evolution in Mendelian populations. Genetics 16: 97-159.
    • (1931) Genetics , vol.16 , pp. 97-159
    • WRIGHT, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.