Construction of a bacterial artificial chromosome library of TM-1, a standard line for genetics and genomics in upland cotton

Journal of Integrative Plant Biology

Volumn 51, Issue 1, 2009, Pages 107-112

  Hu, Yan ^a   Guo, Wang Zhen ^a   Zhang, Tian Zhen ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

Author keywords

Bacterial artificial chromosome library; Polymerase chain reaction screening; Simple sequence repeats markers; TM 1; Upland cotton

Indexed keywords

PLANT DNA; PRIMER DNA;

BACTERIUM; BIOMARKER; CHROMOSOME; CLONE; COTTON; GENETICS; GENOMICS; MAPPING; POLYMERASE CHAIN REACTION; POLYMORPHISM;

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; COTTON; ECOSYSTEM; GENE LIBRARY; GENETICS; GENOMICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR CLONING; MOLECULAR WEIGHT; POLYMERASE CHAIN REACTION; VARIABLE NUMBER OF TANDEM REPEAT;

CHROMOSOMES, ARTIFICIAL, BACTERIAL; CLONING, MOLECULAR; DNA PRIMERS; DNA, PLANT; ECOSYSTEM; GENE LIBRARY; GENOMICS; GOSSYPIUM; MINISATELLITE REPEATS; MOLECULAR WEIGHT; POLYMERASE CHAIN REACTION;

BACTERIA (MICROORGANISMS); GOSSYPIUM HIRSUTUM;

EID: 58149350254     PISSN: 16729072     EISSN: 17447909     Source Type: Journal    
DOI: 10.1111/j.1744-7909.2008.00773.x     Document Type: Article

References (25)

1. Chen ZJ, Schelffler BE, Dennis E, Triplett BA, Zhang TZ, Guo WZ et al. (2007). Toward sequencing cotton (Gossypium) genomes. Plant Physiol. 145, 1303-1310.
2. Endrizzi JE, Turcotte EL, Kohel RJ (1985). Genetics, cytogenetics and evolution of Gossypium. Adv. Genet. 23, 271-275.
3. Frelichowski JE Jr, Palmer MB, Main D, Tomkins JP, Cantrell RG, Stelly DM et al. (2006). Cotton genome mapping with new microsatellites from Acala 'Maxxa' BAC-ends. Mol. Gen. Genet. 275, 479-491.
4. Guo W, Cai C, Wang C, Han Z, Song X, Wang K et al. (2007). A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics 176, 527-541.
5. Han Z, Wang C, Song X, Guo W, Gou J, Li C et al. (2006). Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton. Theor. Appl. Genet. 112, 430-439.
6. Han ZG, Guo WZ, Song XL, Zhang TZ (2004). Genetic mapping of EST-derived microsatellites from the diploid Gossypium arboreum in allotetraploid cotton. Mol. Gen. Genet. 272, 308-327.
7. Hendrix B, Stewart JM (2005). Estimation of the nuclear DNA content of Gossypium species. Ann. Bot. 95, 789-797.
8. Kohel RJ, Richmond TR, Lewis CF (1970). Texas Marker-1, a description of a genetic standard for Gossypium hirsutum L. Crop Sci. 10, 670-671.
9. Kohel RJ, Stelly DM, Yu J (2002). Tests of six cotton (Gossypium hirsutum L.) mutants for association with aneuploids. J. Hered. 93, 130-132.
10. Lee JJ, Hassan OS, Gao W, Wei NE, Kohel RJ, Chen XY et al. (2006). Developmental and gene expression analyses of a cotton naked seed mutant. Planta 223, 418-432.
11. Lund AH, Duch M, Pedersen FS (1996). Increased cloning efficiency by temperature-cycle ligation. Nucl. Acids Res. 24, 800-801.
12. Mozo T, Fischer S, Shizuya H, Altmann T (1998). Construction and characterization of the IGF Arabidopsis BAC library. Mol. Gen. Genet. 258, 562-570.
13. Rong J, Pierce GJ, Waghmare VN (2005). Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton. Theor. Appl. Genet. 111, 1137-1146.
14. Sambrook J, Fritsch EF, Maniatis T (1989). Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press, New York.
15. Samora PJ, Stelly DM, Kohel RJ (1994). Localization and mapping of the Le 1, and Gl 2 loci of cotton (Gossypium hirsutum L.). J. Hered. 85, 152-157.
16. Song X, Wang K, Guo W, Zhang J, Zhang T (2005). A comparison of genetic maps constructed from haploid and BC1 mapping populations from the same crossing between Gossypium hirsutum L. and Gossypium barbadense L. Genome 48, 378-390.
17. Wang XF, Jun MA, Ma ZY, Zhang GY, Zheng YM (2006a). BAC library construction and characterization of Suyuan7235, a cotton germplasm with high fiber strength. Cotton Sci. 18, 200-203 (in Chinese with an English abstract).
18. Wang XF, Ma J, Wang WS, Zheng YM, Zhang GY, Liu CJ et al. (2006b). Construction and characterization of the first bacterial artificial chromosome library for the cotton species Gossypium barbadense L. Genome 49, 1393-1398.
19. Woo SS, Jiang JM, Gill BS, Paterson AH, Wing RA (1994). Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucl. Acids Res. 22, 4922-4931.
20. Yin JM, Guo WZ, Zhang TZ (2006). Construction and identification of bacterial artificial chromosome library for 0-613-2R in Upland cotton. J. Integr. Plant Biol. 48, 219-222.
21. Yin JM, Zhang TZ (2004). Preparation of megabase DNA cotton nuclei for BAC library. Mol. Plant Breeding 2, 354-357 (in Chinese with an English abstract).
22. Yu JZ, Kohel RJ, Zhang HB, Dong JM, Sun SK, Steele NL (2002). Toward development of a whole-genome, BAC/BIBAC-based integrated physical/ genetic map of the cotton genome using the Upland genetic standard TM-1: BAC and BIBAC library construction, SSR marker development, and physical/ genetic map integration. Proceedings of the 3 rd Workshop of the International Cotton Genome Initiative ICGI. Nanjing, China. pp. 108.
23. Zhang TZ, Yuan YL, Yu J, Guo WZ, Kohel RJ (2003). Molecular tagging of a major QTL for fiber strength in Upland cotton and its marker-assisted selection. Theor. Appl. Genet. 106, 262-268.
24. Zhang J, Wu YT, Guo WZ, Zhang TZ (2000). Fast screening of microsatellite markers in cotton with PAGE/silver staining. Cotton Sci. Sin. 12, 267-269 (in Chinese with an English abstract).
25. Zheng YM, Wang XF, Zhang GY, Li XH, Ma ZY (2004). BAC library construction of Zhongmiansuo12 with high yield, high quality and disease resistance. J. Hebei Agric. Univ. 27, 17-20 (in Chinese with an English abstract).