메뉴 건너뛰기




Volumn 45, Issue 6, 2008, Pages 637-646

Combining multiple PCR primer pairs for each amplicon can improve SNP genotyping accuracy by reducing allelic drop-out

Author keywords

[No Author keywords available]

Indexed keywords

BASE SEQUENCE; DNA PRIMERS; GENETIC VARIATION; GENOTYPE; HUMANS; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ANALYSIS, DNA;

EID: 58149348363     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/000112992     Document Type: Article
Times cited : (3)

References (21)
  • 1
    • 33645213803 scopus 로고    scopus 로고
    • Distribution of human SNPs and its effect on high-throughput genotyping
    • Koboldt, D.C., R.D. Miller, and P.Y. Kwok. 2006. Distribution of human SNPs and its effect on high-throughput genotyping. Hum. Mutat. 27:249-254.
    • (2006) Hum. Mutat , vol.27 , pp. 249-254
    • Koboldt, D.C.1    Miller, R.D.2    Kwok, P.Y.3
  • 3
    • 0036157589 scopus 로고    scopus 로고
    • Detection and integration of genotyping errors in statistical genetics
    • Sobel, E., J.C. Papp, and K. Lange. 2002. Detection and integration of genotyping errors in statistical genetics. Am. J. Hum. Genet. 70:496-508.
    • (2002) Am. J. Hum. Genet , vol.70 , pp. 496-508
    • Sobel, E.1    Papp, J.C.2    Lange, K.3
  • 4
    • 36849078874 scopus 로고    scopus 로고
    • Allelic drop-out in the LDLR gene affects mutation detection in familial hypercholesterolemia
    • Laios, E. and K. Glynou. 2008. Allelic drop-out in the LDLR gene affects mutation detection in familial hypercholesterolemia. Clin. Biochem. 41:38-40.
    • (2008) Clin. Biochem , vol.41 , pp. 38-40
    • Laios, E.1    Glynou, K.2
  • 5
    • 33746271337 scopus 로고    scopus 로고
    • Allelic drop-out may occur with a primer binding site polymorphism for the commonly used RFLP assay for the -1131T>C polymorphism of the Apolipoprotein AV gene
    • Ward, K.J., S. Ellard, C.S. Yajnik, T.M. Frayling, A.T. Hattersley, P.N. Venigalla, and G.R. Chandak. 2006. Allelic drop-out may occur with a primer binding site polymorphism for the commonly used RFLP assay for the -1131T>C polymorphism of the Apolipoprotein AV gene. Lipids Health Dis. 5:11.
    • (2006) Lipids Health Dis , vol.5 , pp. 11
    • Ward, K.J.1    Ellard, S.2    Yajnik, C.S.3    Frayling, T.M.4    Hattersley, A.T.5    Venigalla, P.N.6    Chandak, G.R.7
  • 6
    • 11144279421 scopus 로고    scopus 로고
    • Allelic drop-out in the STR system ACTBP2 (SE33) as a result of mutations in the primer binding region
    • Heinrich, M., M. Muller, S. Rand, B. Brinkmann, and C. Hohoff. 2004. Allelic drop-out in the STR system ACTBP2 (SE33) as a result of mutations in the primer binding region. Int. J. Legal Med. 118:361-363.
    • (2004) Int. J. Legal Med , vol.118 , pp. 361-363
    • Heinrich, M.1    Muller, M.2    Rand, S.3    Brinkmann, B.4    Hohoff, C.5
  • 7
    • 33947398015 scopus 로고    scopus 로고
    • Robustness of single-base extension against mismatches at the site of primer attachment in a clinical assay
    • Kirsten, H., D. Teupser, J. Weissfuss, G. Wolfram, F. Emmrich, and P. Ahnert. 2007. Robustness of single-base extension against mismatches at the site of primer attachment in a clinical assay. J. Mol. Med. 85:361-369.
    • (2007) J. Mol. Med , vol.85 , pp. 361-369
    • Kirsten, H.1    Teupser, D.2    Weissfuss, J.3    Wolfram, G.4    Emmrich, F.5    Ahnert, P.6
  • 8
    • 33847688114 scopus 로고    scopus 로고
    • Primer-site SNPs mask mutations
    • Quinlan, A.R. and G.T. Marth. 2007. Primer-site SNPs mask mutations. Nat. Methods 4:192.
    • (2007) Nat. Methods , vol.4 , pp. 192
    • Quinlan, A.R.1    Marth, G.T.2
  • 10
    • 33845749237 scopus 로고    scopus 로고
    • Dynamic variable selection in SNP genotype autocalling from APEX microarray data
    • Podder, M., W.J. Welch, R.H. Zamar, and S.J. Tebbutt. 2006. Dynamic variable selection in SNP genotype autocalling from APEX microarray data. BMC Bioinformatics 7:521.
    • (2006) BMC Bioinformatics , vol.7 , pp. 521
    • Podder, M.1    Welch, W.J.2    Zamar, R.H.3    Tebbutt, S.J.4
  • 12
    • 33646145316 scopus 로고    scopus 로고
    • MACGT: Multi-dimensional automated clustering genotyping tool for analysis of microarray-based mini-sequencing data
    • Walley, D.C., B.W. Tripp, Y.C. Song, K.R. Walley, and S.J. Tebbutt. 2006. MACGT: multi-dimensional automated clustering genotyping tool for analysis of microarray-based mini-sequencing data. Bioinformatics 22:1147-1149.
    • (2006) Bioinformatics , vol.22 , pp. 1147-1149
    • Walley, D.C.1    Tripp, B.W.2    Song, Y.C.3    Walley, K.R.4    Tebbutt, S.J.5
  • 14
    • 20044387759 scopus 로고    scopus 로고
    • A genotyping system capable of simultaneously analyzing >1000 single nucleotide polymorphisms in a haploid genome
    • Wang, H.Y., M. Luo, I.V. Tereshchenko, D.M. Frikker, X. Ciu, J.Y. Li, G. Hu, Y. Chu, et al. 2005. A genotyping system capable of simultaneously analyzing >1000 single nucleotide polymorphisms in a haploid genome. Genome Res. 15:276-283.
    • (2005) Genome Res , vol.15 , pp. 276-283
    • Wang, H.Y.1    Luo, M.2    Tereshchenko, I.V.3    Frikker, D.M.4    Ciu, X.5    Li, J.Y.6    Hu, G.7    Chu, Y.8
  • 15
    • 33646005232 scopus 로고    scopus 로고
    • Deoxynucleotides can replace dideoxynucleotides in minisequencing by arrayed primer extension
    • Tebbutt, S.J., G.D. Mercer, R. Do, B.W. Tripp, A.W. Wong, and J. Ruan. 2006. Deoxynucleotides can replace dideoxynucleotides in minisequencing by arrayed primer extension. Biotechniques 40:331-338.
    • (2006) Biotechniques , vol.40 , pp. 331-338
    • Tebbutt, S.J.1    Mercer, G.D.2    Do, R.3    Tripp, B.W.4    Wong, A.W.5    Ruan, J.6
  • 16
    • 0028834086 scopus 로고
    • Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization
    • Livak, K.J., S.J. Flood, J. Marmaro, W. Giusti, and K. Deetz. 1995. Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization. PCR Methods Appl. 4:357-362.
    • (1995) PCR Methods Appl , vol.4 , pp. 357-362
    • Livak, K.J.1    Flood, S.J.2    Marmaro, J.3    Giusti, W.4    Deetz, K.5
  • 21
    • 0033865806 scopus 로고    scopus 로고
    • A system for specific, high-throughput genotyping by allele-specific primer extension on microarrays
    • Pastinen, T., M. Raitio, K. Lindroos, P. Tainola, L. Peltonen, and A.C. Syvanen. 2000. A system for specific, high-throughput genotyping by allele-specific primer extension on microarrays. Genome Res. 10:1031-1042.
    • (2000) Genome Res , vol.10 , pp. 1031-1042
    • Pastinen, T.1    Raitio, M.2    Lindroos, K.3    Tainola, P.4    Peltonen, L.5    Syvanen, A.C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.