메뉴 건너뛰기




Volumn 8, Issue 11, 2008, Pages 3870-3878

A DNA nanotransport device powered by polymerase φ29

Author keywords

[No Author keywords available]

Indexed keywords

DNA STRANDS; DRIVING FORCES; FLUORESCENCE RESONANCES; LIFE PROCESS; NANO-SCALE; NANOTRANSPORT; ROOM TEMPERATURES;

EID: 58149311447     PISSN: 15306984     EISSN: None     Source Type: Journal    
DOI: 10.1021/nl802294d     Document Type: Article
Times cited : (33)

References (58)
  • 1
    • 84868910491 scopus 로고    scopus 로고
    • http://www.neb.com/nebecomm/products/faqproductm0269.asp.
  • 2
    • 0028114541 scopus 로고
    • Molecular computation of solutions to combinatorial problems
    • Adleman, L. Molecular computation of solutions to combinatorial problems. Science 1994, 266, 1021-1024.
    • (1994) Science , vol.266 , pp. 1021-1024
    • Adleman, L.1
  • 3
    • 0037452595 scopus 로고    scopus 로고
    • DNA duplex-quadruplex exchange as the basis for a nanomolecular machine
    • Alberti, P.; Mergny, J. L. DNA duplex-quadruplex exchange as the basis for a nanomolecular machine. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 1569-1573.
    • (2003) Proc. Natl. Acad. Sci. U.S.A , vol.100 , pp. 1569-1573
    • Alberti, P.1    Mergny, J.L.2
  • 4
    • 0032533431 scopus 로고    scopus 로고
    • Signal amplification of padlock probes by rolling circle replication
    • Baner, J.; Nilsson, M.; Mendel-Hartvig, M.; Landegren, U. Signal amplification of padlock probes by rolling circle replication. Nucleic Acids Res. 1998, 26, 5073-5078.
    • (1998) Nucleic Acids Res , vol.26 , pp. 5073-5078
    • Baner, J.1    Nilsson, M.2    Mendel-Hartvig, M.3    Landegren, U.4
  • 5
    • 22744435502 scopus 로고    scopus 로고
    • A free-running DNA motor powered by a nicking enzyme
    • Bath, J.; Green, S. J.; Turberfield., A. J. A free-running DNA motor powered by a nicking enzyme. Angew. Chem., Int. Ed. 2005, 44, 4358-4361.
    • (2005) Angew. Chem., Int. Ed , vol.44 , pp. 4358-4361
    • Bath, J.1    Green, S.J.2    Turberfield, A.J.3
  • 7
    • 2642555548 scopus 로고    scopus 로고
    • An autonomous molecular computer for logical control of gene expression
    • Benenson, Y.; Gil, B.; Ben-Dor, U.; Adar, R.; Shapiro, E. An autonomous molecular computer for logical control of gene expression. Nature 2004, 429, 423-429.
    • (2004) Nature , vol.429 , pp. 423-429
    • Benenson, Y.1    Gil, B.2    Ben-Dor, U.3    Adar, R.4    Shapiro, E.5
  • 8
    • 0035936116 scopus 로고    scopus 로고
    • Programmable and autonomous computing machine made of biomolecules
    • Benenson, Y.; Paz-Elizur, T.; Adar, R.; Keinan, E.; Livneh, Z.; Shapiro, E. Programmable and autonomous computing machine made of biomolecules. Nature 2001, 414, 430-434.
    • (2001) Nature , vol.414 , pp. 430-434
    • Benenson, Y.1    Paz-Elizur, T.2    Adar, R.3    Keinan, E.4    Livneh, Z.5    Shapiro, E.6
  • 9
    • 34547175132 scopus 로고    scopus 로고
    • Structures of phi29 DNA polymerase complexed with substrate: The mechanism of translocation in b-family polymerases
    • Berman, A. J.; Kamtekar, S.; Goodman, J. L.; de Vega, J. M. L. M.; Blanco, L.; Salas, M.; Steitz, T. A. Structures of phi29 DNA polymerase complexed with substrate: the mechanism of translocation in b-family polymerases. EMBO J. 2007, 26, 3494-3505.
    • (2007) EMBO J , vol.26 , pp. 3494-3505
    • Berman, A.J.1    Kamtekar, S.2    Goodman, J.L.3    de Vega, J.M.L.M.4    Blanco, L.5    Salas, M.6    Steitz, T.A.7
  • 11
    • 3242741738 scopus 로고    scopus 로고
    • Putting a brake on an autonomous DNA nanomotor
    • Chen, Y.; Mao, C. Putting a brake on an autonomous DNA nanomotor. J. Am. Chem. Soc. 2004, 126, 8626-8627.
    • (2004) J. Am. Chem. Soc , vol.126 , pp. 8626-8627
    • Chen, Y.1    Mao, C.2
  • 12
    • 4544365768 scopus 로고    scopus 로고
    • An autonomous DNA nanomotor powered by a DNA enzyme
    • Chen, Y.; Wang, M.; Mao, C. An autonomous DNA nanomotor powered by a DNA enzyme. Angew. Chem., Int. Ed. 2004, 43, 3554-3557.
    • (2004) Angew. Chem., Int. Ed , vol.43 , pp. 3554-3557
    • Chen, Y.1    Wang, M.2    Mao, C.3
  • 13
    • 0141534416 scopus 로고    scopus 로고
    • A two-state DNA lattice switched by DNA nanoactuator
    • Feng, L.; Park, S. H.; Reif, J. H.; Yan, H. A two-state DNA lattice switched by DNA nanoactuator. Angew. Chem., Int. Ed. 2003, 42, 4342-4346.
    • (2003) Angew. Chem., Int. Ed , vol.42 , pp. 4342-4346
    • Feng, L.1    Park, S.H.2    Reif, J.H.3    Yan, H.4
  • 14
    • 0032478549 scopus 로고    scopus 로고
    • RNA polymerase as a molecular motor
    • Gelles, J.; Landick, R. RNA polymerase as a molecular motor. Cell 1998, 93, 13-16.
    • (1998) Cell , vol.93 , pp. 13-16
    • Gelles, J.1    Landick, R.2
  • 15
    • 0042693074 scopus 로고    scopus 로고
    • Tuning and switching a DNA polymerase motor with mechanical tension
    • Goel, A.; Astumian, R. D.; Herschbach, D. Tuning and switching a DNA polymerase motor with mechanical tension. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 9699-9704.
    • (2003) Proc. Natl. Acad. Sci. U.S.A , vol.100 , pp. 9699-9704
    • Goel, A.1    Astumian, R.D.2    Herschbach, D.3
  • 16
    • 8844274078 scopus 로고    scopus 로고
    • Insights into strand displacement and processivity from the crystal structure of the protein-primed DNA polymerase of bacteriophage phi29
    • Kamtekar, S.; Berman, A. J.; Wang, J.; de Vega, J. M. L. M.; Blanco, L.; Salas, M.; Steitz, T. A. Insights into strand displacement and processivity from the crystal structure of the protein-primed DNA polymerase of bacteriophage phi29. Mol. Cell 2004, 16, 609-18.
    • (2004) Mol. Cell , vol.16 , pp. 609-618
    • Kamtekar, S.1    Berman, A.J.2    Wang, J.3    de Vega, J.M.L.M.4    Blanco, L.5    Salas, M.6    Steitz, T.A.7
  • 17
    • 33645303495 scopus 로고    scopus 로고
    • The phi29 DNA polymerase: Protein-primer structure suggests a model for the initiation to elongation transition
    • Kamtekar, S.; Berman, A. J.; Wang, J.; de Vega, J. M. L. M.; Blanco, L.; Salas, M.; Steitz, T. A. The phi29 DNA polymerase: protein-primer structure suggests a model for the initiation to elongation transition. EMBO J. 2006,
    • (2006) EMBO J
    • Kamtekar, S.1    Berman, A.J.2    Wang, J.3    de Vega, J.M.L.M.4    Blanco, L.5    Salas, M.6    Steitz, T.A.7
  • 18
    • 0034620686 scopus 로고    scopus 로고
    • Construction, analysis, ligation and self-assembly of DNA triple crossover complexes
    • LaBean, T. H.; Yan, H.; Kopatsch, J.; Liu, F.; Winfree, E.; Reif, J. H.; Seeman, N. C. Construction, analysis, ligation and self-assembly of DNA triple crossover complexes. J. Am. Chem. Soc. 2000, 122, 1848-1860.
    • (2000) J. Am. Chem. Soc , vol.122 , pp. 1848-1860
    • LaBean, T.H.1    Yan, H.2    Kopatsch, J.3    Liu, F.4    Winfree, E.5    Reif, J.H.6    Seeman, N.C.7
  • 19
    • 0037952722 scopus 로고    scopus 로고
    • A single DNA molecule nanomotor
    • Li, J.; Tan, W. A single DNA molecule nanomotor. Nano Lett. 2002, 2, 315-318.
    • (2002) Nano Lett , vol.2 , pp. 315-318
    • Li, J.1    Tan, W.2
  • 21
    • 1542345305 scopus 로고    scopus 로고
    • Liu, D.; Wang, M.; Deng, Z.; Walulu, R.; Mao, C. Tensegrity: Construction of rigid DNA triangles with flexible four-arm DNA junctions. J. Am. Chem. Soc. 2004, 126, 2324-2325.
    • Liu, D.; Wang, M.; Deng, Z.; Walulu, R.; Mao, C. Tensegrity: Construction of rigid DNA triangles with flexible four-arm DNA junctions. J. Am. Chem. Soc. 2004, 126, 2324-2325.
  • 22
    • 0034642536 scopus 로고    scopus 로고
    • Liu, Q.; Wang, L.; Frutos, A. G.; Condon, A. E.; Corn, R. M.; Smith, L. M. DNA computing on surfaces. Nature 2000, 403, 175-179.
    • Liu, Q.; Wang, L.; Frutos, A. G.; Condon, A. E.; Corn, R. M.; Smith, L. M. DNA computing on surfaces. Nature 2000, 403, 175-179.
  • 23
    • 0034727072 scopus 로고    scopus 로고
    • Logical computation using algorithmic self-assembly of DNA triple-crossover molecules
    • Mao, C.; LaBean, T. H.; Reif, J. H.; Seeman, N. C. Logical computation using algorithmic self-assembly of DNA triple-crossover molecules. Nature 2000, 407, 493-496.
    • (2000) Nature , vol.407 , pp. 493-496
    • Mao, C.1    LaBean, T.H.2    Reif, J.H.3    Seeman, N.C.4
  • 24
    • 0033575066 scopus 로고    scopus 로고
    • Designed two-dimensional DNA holliday junction arrays visualized by atomic force microscopy
    • Mao, C.; Sun, W.; Seeman, N. C. Designed two-dimensional DNA holliday junction arrays visualized by atomic force microscopy. J. Am. Chem. Soc. 1999, 121, 5437-5443.
    • (1999) J. Am. Chem. Soc , vol.121 , pp. 5437-5443
    • Mao, C.1    Sun, W.2    Seeman, N.C.3
  • 25
    • 0033552937 scopus 로고    scopus 로고
    • A DNA nanomechanical device based on the B-Z transition
    • Mao, C.; Sun, W.; Shen, Z.; Seeman, N. C. A DNA nanomechanical device based on the B-Z transition. Nature 1999, 397, 144-146.
    • (1999) Nature , vol.397 , pp. 144-146
    • Mao, C.1    Sun, W.2    Shen, Z.3    Seeman, N.C.4
  • 26
    • 0037131464 scopus 로고    scopus 로고
    • Nanomechanical devices based on DNA
    • Niemeyer, C. M.; Adler, M. Nanomechanical devices based on DNA. Angew. Chem., Int. Ed. 2002, 41, 3779-3783.
    • (2002) Angew. Chem., Int. Ed , vol.41 , pp. 3779-3783
    • Niemeyer, C.M.1    Adler, M.2
  • 30
    • 21144438565 scopus 로고    scopus 로고
    • The design of autonomous DNA nanomechanical devices: Walking and rolling DNA
    • Reif, J. H. The design of autonomous DNA nanomechanical devices: Walking and rolling DNA. Lect. Notes Comput. Sci. 2003, 2568, 22-37.
    • (2003) Lect. Notes Comput. Sci , vol.2568 , pp. 22-37
    • Reif, J.H.1
  • 31
    • 4143067884 scopus 로고    scopus 로고
    • Published in: Reif, J. H. Natural Computing 2003, 2, 439-461.
    • Published in: Reif, J. H. Natural Computing 2003, 2, 439-461.
  • 32
    • 49949118225 scopus 로고    scopus 로고
    • Autonomous programmable DNA nanorobotic devices using DNAzymes
    • Technical Report CS-2007-06, Duke University, Computer Science Department
    • Reif, J. H.; Sahu, S. Autonomous programmable DNA nanorobotic devices using DNAzymes; Technical Report CS-2007-06, Duke University, Computer Science Department, 2007.
    • (2007)
    • Reif, J.H.1    Sahu, S.2
  • 33
    • 18144365195 scopus 로고    scopus 로고
    • A specific subdomain in phi29 dna polymerase confers both processivity and strand-displacement capacity
    • Rodr, I.; Berman, A. J.; Wang, J.; Steitz, T. A.; Salas, M.; de Vega, M. A specific subdomain in phi29 dna polymerase confers both processivity and strand-displacement capacity. Proc. Natl. Acad. Sci. U.S.A., 102, 6407-12.
    • Proc. Natl. Acad. Sci. U.S.A , vol.102 , pp. 6407-6412
    • Rodr, I.1    Berman, A.J.2    Wang, J.3    Steitz, T.A.4    Salas, M.5    de Vega, M.6
  • 34
    • 33645028600 scopus 로고    scopus 로고
    • Folding DNA to create nanoscale shapes and patterns
    • Rothemund, P. W. K. Folding DNA to create nanoscale shapes and patterns. Nature 2006, 440, 297-302.
    • (2006) Nature , vol.440 , pp. 297-302
    • Rothemund, P.W.K.1
  • 35
    • 0025635653 scopus 로고
    • De novo design of sequences for nucleic acid structural engineering
    • Seeman, N. C. De novo design of sequences for nucleic acid structural engineering. J. Biomol. Struct. Dyn. 1990, 8, 573-581.
    • (1990) J. Biomol. Struct. Dyn , vol.8 , pp. 573-581
    • Seeman, N.C.1
  • 36
    • 0033834654 scopus 로고    scopus 로고
    • Atomic force microscopy of parallel DNA branched junction arrays
    • Sha, R.; Liu, R.; Millar, D. P.; Seeman, N. C. Atomic force microscopy of parallel DNA branched junction arrays. Chem. Biol. 2000, 7, 743-751.
    • (2000) Chem. Biol , vol.7 , pp. 743-751
    • Sha, R.1    Liu, R.2    Millar, D.P.3    Seeman, N.C.4
  • 37
    • 4143142965 scopus 로고    scopus 로고
    • A precisely controlled DNA biped walking device
    • Sherman, W. B.; Seeman, N. C. A precisely controlled DNA biped walking device. Nano Lett. 2004, 4, 1203-1207.
    • (2004) Nano Lett , vol.4 , pp. 1203-1207
    • Sherman, W.B.1    Seeman, N.C.2
  • 38
    • 4444298687 scopus 로고    scopus 로고
    • Shin, J. S.; Pierce, N. A. A synthetic DNA walker for molecular transport. J. Am. Chem. Soc. 2004, 126, 10834-10835.
    • Shin, J. S.; Pierce, N. A. A synthetic DNA walker for molecular transport. J. Am. Chem. Soc. 2004, 126, 10834-10835.
  • 39
    • 0035304881 scopus 로고    scopus 로고
    • Using DNA to construct and power a nanoactuator
    • Simmel, F. C.; Yurke, B. Using DNA to construct and power a nanoactuator. Phys. Rev. E 2001, 63, 041913.
    • (2001) Phys. Rev. E , vol.63 , pp. 041913
    • Simmel, F.C.1    Yurke, B.2
  • 40
    • 79956016523 scopus 로고    scopus 로고
    • A DNA-based molecular device switchable between three distinct mechanical states
    • Simmel, F. C.; Yurke, B. A DNA-based molecular device switchable between three distinct mechanical states. Appl. Phys. Lett. 2002, 80, 883-885.
    • (2002) Appl. Phys. Lett , vol.80 , pp. 883-885
    • Simmel, F.C.1    Yurke, B.2
  • 41
    • 0036514031 scopus 로고    scopus 로고
    • Rna polymerase as a molecular machine
    • Spirin, A. S. Rna polymerase as a molecular machine. Mol. Biol. 2002, 36, 153-159.
    • (2002) Mol. Biol , vol.36 , pp. 153-159
    • Spirin, A.S.1
  • 42
    • 85056017495 scopus 로고    scopus 로고
    • Unravelling the mechanism of rna-polymerase forward motion by using mechanical force
    • Thomen, P.; Lopez, P. J.; Heslot, F. Unravelling the mechanism of rna-polymerase forward motion by using mechanical force. Phys. Rev. Lett. 2005, 94.
    • (2005) Phys. Rev. Lett , pp. 94
    • Thomen, P.1    Lopez, P.J.2    Heslot, F.3
  • 43
    • 22744435354 scopus 로고    scopus 로고
    • A DNAzyme that walks processively and autonomously along a one-dimensional track
    • Tian, Y.; He, Y.; Chen, Y.; Yin, P.; Mao, C. A DNAzyme that walks processively and autonomously along a one-dimensional track. Angew. Chem., Int. Ed. 2005, 44, 4355-4358.
    • (2005) Angew. Chem., Int. Ed , vol.44 , pp. 4355-4358
    • Tian, Y.1    He, Y.2    Chen, Y.3    Yin, P.4    Mao, C.5
  • 44
    • 4544294788 scopus 로고    scopus 로고
    • Molecular gears: A pair of DNA circles continously rolls against each other
    • Tian, Y.; Mao, C. Molecular gears: A pair of DNA circles continously rolls against each other. J. Am. Chem. Soc. 2004, 126, 11410-11411.
    • (2004) J. Am. Chem. Soc , vol.126 , pp. 11410-11411
    • Tian, Y.1    Mao, C.2
  • 46
    • 0003921057 scopus 로고    scopus 로고
    • DNA hybridization catalysts and molecular tweezers
    • Turberfield, A. J.; Yurke, B.; Mills, J. A. P. DNA hybridization catalysts and molecular tweezers. DNA5, 2000
    • (2000) DNA5
    • Turberfield, A.J.1    Yurke, B.2    Mills, J.A.P.3
  • 48
    • 61649093001 scopus 로고    scopus 로고
    • Winfree, E. Complexity of restricted and unrestricted models of molecular computation. In DNA Based Computers 1; Lipton, R. J., Baum, E., Eds.; American Mathematical Society: Providence, RI, 1996; 27 of DIMACS, pp 187-198.
    • Winfree, E. Complexity of restricted and unrestricted models of molecular computation. In DNA Based Computers 1; Lipton, R. J., Baum, E., Eds.; American Mathematical Society: Providence, RI, 1996; Vol. 27 of DIMACS, pp 187-198.
  • 49
    • 61649105486 scopus 로고    scopus 로고
    • Winfree, E. Simulation of computing by self-assembly. Technical Report 1998.22, Caltech, 1998.
    • Winfree, E. Simulation of computing by self-assembly. Technical Report 1998.22, Caltech, 1998.
  • 50
    • 0032490948 scopus 로고    scopus 로고
    • Design and self-assembly of two-dimensional DNA crystals
    • Winfree, E.; Liu, F.; Wenzler, L. A.; Seeman, N. C. Design and self-assembly of two-dimensional DNA crystals. Nature 1998, 394 (6693), 539-544.
    • (1998) Nature , vol.394 , Issue.6693 , pp. 539-544
    • Winfree, E.1    Liu, F.2    Wenzler, L.A.3    Seeman, N.C.4
  • 51
    • 61649084428 scopus 로고    scopus 로고
    • Winfree, E.; Yang, X.; Seeman, N. C. Universal computation via self-assembly of DNA: Some theory and experiments. In DNA Based Computers II; Landweber, L., Baum, E., Eds.; American Mathematical Society: Providence, RI, 1999; 44 of DIMACS, pp 191-213.
    • Winfree, E.; Yang, X.; Seeman, N. C. Universal computation via self-assembly of DNA: Some theory and experiments. In DNA Based Computers II; Landweber, L., Baum, E., Eds.; American Mathematical Society: Providence, RI, 1999; Vol. 44 of DIMACS, pp 191-213.
  • 52
    • 0037816375 scopus 로고    scopus 로고
    • Directed nucleation assembly of DNA tile complexes for barcode-patterned lattices
    • Yan, H.; LaBean, T. H.; Feng, L.; Reif, J. H. Directed nucleation assembly of DNA tile complexes for barcode-patterned lattices. Proc. Natl. Acad. Sci. U.S.A. 2003, 100 (14), 8103-8108.
    • (2003) Proc. Natl. Acad. Sci. U.S.A , vol.100 , Issue.14 , pp. 8103-8108
    • Yan, H.1    LaBean, T.H.2    Feng, L.3    Reif, J.H.4
  • 53
    • 0141534348 scopus 로고    scopus 로고
    • DNA-templated self-assembly of protein arrays and highly conductive nanowires
    • Yan, H.; Park, S. H.; Finkelstein, G.; Reif, J. H.; LaBean, T. H. DNA-templated self-assembly of protein arrays and highly conductive nanowires. Science 2003, 301 (5641), 1882-1884.
    • (2003) Science , vol.301 , Issue.5641 , pp. 1882-1884
    • Yan, H.1    Park, S.H.2    Finkelstein, G.3    Reif, J.H.4    LaBean, T.H.5
  • 54
    • 0037011984 scopus 로고    scopus 로고
    • A robust DNA mechanical device controlled by hybridization topology
    • Yan, H.; Zhang, X.; Shen, Z.; Seeman, N. C. A robust DNA mechanical device controlled by hybridization topology. Nature 2002, 415, 62-65.
    • (2002) Nature , vol.415 , pp. 62-65
    • Yan, H.1    Zhang, X.2    Shen, Z.3    Seeman, N.C.4
  • 55
    • 33645585154 scopus 로고    scopus 로고
    • Designs of autonomous unidirectional walking DNA devices
    • Technical Report CS-2004-01, Duke University, Computer Science Department
    • Yin, P.; Turberfield, A. J.; Reif, J. H. Designs of autonomous unidirectional walking DNA devices. Technical Report CS-2004-01, Duke University, Computer Science Department, 2004.
    • (2004)
    • Yin, P.1    Turberfield, A.J.2    Reif, J.H.3
  • 57
    • 57649241606 scopus 로고    scopus 로고
    • A molecular machine made of and powdered by DNA
    • Yurke, B.; Mills, A.; Turberfield, A. A molecular machine made of and powdered by DNA. Biophysics 2000, 78, 2629.
    • (2000) Biophysics , vol.78 , pp. 2629
    • Yurke, B.1    Mills, A.2    Turberfield, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.