Real-time quantitative loop-mediated isothermal amplification as a simple method for detecting white spot syndrome virus

Letters in Applied Microbiology

Volumn 48, Issue 1, 2009, Pages 25-32

  Mekata, T ^a   Sudhakaran, R ^a   Kono, T ^a   Supamattaya, K ^b   Linh, N T H ^a   Sakai, M ^a   Itami, T ^a  

^a UNIVERSITY OF MIYAZAKI   (Japan)

^b PRINCE OF SONGKLA UNIVERSITY   (Thailand)

Author keywords

Diagnosis; Quantification; Real time LAMP; Shrimp; WSSV

Indexed keywords

ISOTHERMS; SENSITIVITY ANALYSIS; SHELLFISH; TURBIDIMETERS; VIRUSES;

DETECTION AND QUANTIFICATIONS; LOOP MEDIATED ISOTHERMAL AMPLIFICATIONS; LOOP-MEDIATED ISOTHERMAL AMPLIFICATIONS; QUANTIFICATION; QUANTITATIVE DETECTION; REAL- TIME; REAL-TIME LAMP; SHRIMP; SIMPLE METHOD; WHITE SPOT SYNDROME VIRUS;

DNA;

COMPLEMENTARY DNA;

DILUTION; PATHOGENS; REAL TIME SYSTEMS; TURBIDIMETERS; TURBIDITY; VIRUSES;

CRUSTACEAN; DETECTION METHOD; ISOTHERM; MONITORING; PATHOGEN; QUANTITATIVE ANALYSIS; REAL TIME; SENSITIVITY ANALYSIS; VIRUS;

ARTICLE; CONTROLLED STUDY; DNA DETERMINATION; DNA TEMPLATE; GENE SEQUENCE; NONHUMAN; REAL TIME POLYMERASE CHAIN REACTION; TURBIDIMETRY; WHITE SPOT SYNDROME VIRUS;

CRUSTACEA; DECAPODA (CRUSTACEA); INFECTIOUS HYPODERMAL AND HEMATOPOIETIC NECROSIS VIRUS; SHRIMP WHITE SPOT SYNDROME VIRUS;

EID: 58149299695     PISSN: 02668254     EISSN: 1472765X     Source Type: Journal    
DOI: 10.1111/j.1472-765X.2008.02479.x     Document Type: Article

References (52)

1. Cai, T., Lou, G., Yang, J., Xu, D. Meng, Z. (2008) Development and evaluation of real-time loop-mediated isothermal amplification for hepatitis B virus DNA quantification: a new tool for HBV management. J Clin Virol 41, 270 276.
2. Chang, P.S., Lo, C.F., Wang, Y.C. Kou, G.H. (1996) Identification of white spot syndrome associated baculovirus (WSBV) target organs in the shrimp Penaeus monodon by in situ hybridization. Dis Aquat Organ 27, 131 139.
3. Chen, L.L., Lo, C.F., Chiu, Y.L., Chang, C.F. Kou, G.H. (2000) Natural and experimental infection of white spot syndrome virus (WSSV) in benthic larvae of mud crab Scylla serrata. Dis Aquat Organ 40, 157 161.
4. Chen, L.L., Wang, H.C., Huang, C.J., Peng, S.E., Chen, Y.G., Lin, S.J., Chen, W.Y., Dai, C.F. et al. (2002) Transcriptional analysis of the DNA polymerase gene of shrimp white spot syndrome virus. Virology 301, 136 147.
5. Chou, H.Y., Huang, C.Y., Wang, C.H. Lo, C.F. (1995) Pathogenicity of a baculovirus infection causing white spot syndrome in cultured penaeid shrimp in Taiwan. Dis Aquat Organ 23, 165 173.
6. Dai, H., Gao, H., Zhao, X., Dai, L., Zhang, X., Xiao, N., Zhao, R. Hemmingsen, S.M. (2003) Construction and characterization of a novel recombinant single-chain variable fragment antibody against White Spot Syndrome Virus from shrimp. J Immunol Methods 279, 267 275.
7. Durand, S.V., Redman, R.M., Mohney, L.L., Tang-Nelson, K., Bonami, J.R. Lightner, D.V. (2003) Qualitative and quantitative studies on the relative virus load of tails and heads of shrimp acutely infected with WSSV. Aquaculture 216, 9 18.
8. Flegel, T.W. (1997) Major viral diseases of the black tiger prawn (Penaeus monodon) in Thailand. World J Microbiol Biotechnol 13, 433 442.
9. Huang, J., Wang, X.H., Song, X.L., Ma, C.S., Zhao, F.X. Yang, C.H. (1995) Suvey on the pathogen and route of transmission of baculoviral hypodermal and hematopoietic necrosis in shrimp by ELISA of monoclonal antibody. Mar Fish Res 16, 40 45.
10. Huang, C.H., Shi, Z.L., Zhang, J.H., Zhang, L.P., Wu, X.F., Bonami, J.R., Chen, D.H. Wu, Q.J. (2000) Study of white spot syndrome baculovirus infection process in Penaeus monodon by in situ hubridization. Chin J Virol 16, 242 246.
11. van Hulten, M.C., Witteveldt, J., Peters, S., Kloosterboer, N., Tarchini, R., Fiers, M., Sandbrink, H., Lankhorst, R.K. et al. (2001) The white spot syndrome virus DNA genome sequence. Virology 286, 7 22.
12. Jian, X.F., Lu, L., Chen, Y.G., Chan, S.M. He, J.G. (2005) Comparison of a novel in situ polymerase chain reaction (ISPCR) method to other methods for white spot syndrome virus (WSSV) detection in Penaeus vannamei. Dis Aquat Organ 67, 171 176.
13. Kasornchandra, J., Boonyaratpalin, S. Itami, T. (1998) Detection of whitespot syndrome in cultured Penaeid shrimp in Asia: microscopic obserbation and polymerase chain reaction. Aquaculture 164, 243 251.
14. Khadijah, S., Neo, S.Y., Hossain, M.S., Miller, L.D., Mathavan, S. Kwang, J. (2003) Identification of white spot syndrome virus latency-related genes in specific-pathogen-free shrimps by use of a microarray. J Virol 77, 10162 10167.
15. Khawsak, P., Deesukon, W., Chaivisuthangkura, P. Sukhumsirichart, W. (2008) Multiplex RT-PCR assay for simultaneous detection of six viruses of penaeid shrimp. Mol Cell Probes 22, 177 183.
16. Kiatpathomchai, W., Jareonram, W., Jitrapakdee, S. Flegel, T.W. (2007) Rapid and sensitive detection of Taura syndrome virus by reverse transcription loop-mediated isothermal amplification. J Virol Methods 146, 125 128.
17. Kono, T., Savan, R., Sakai, M. Itami, T. (2004) Detection of white spot syndrome virus in shrimp by loop-mediated isothermal amplification. J Virol Methods 115, 59 65.
18. Lightner, D.V. (ed 1996) A Hand Book of Shrimp Pathology and Diagnostic Procedures for Diseases of Cultured Penaeid Shrimp. Baton Rouge, LA, World Aquaculture Society.
19. Lo, C.F., Leu, J.H., Ho, C.H., Chen, C.H., Peng, S.E., Chen, Y.T., Chou, C.M., Yeh, P.Y. et al. (1996a) Detection of baculovirus associated with white spot syndrome (WSBV) in Penaeid shrimps using polymerase chain reaction. Dis Aquat Organ 25, 133 141.
20. Lo, C.F., Ho, C.H., Peng, S.E., Chen, C.H., Hsu, H.C., Chiu, Y.L., Chang, C.F., Liu, K.F. et al. (1996b) White spot syndrome baculovirus (WSBV) detected in cultured and captured shrimp, crabs and other arthropods. Dis Aquat Organ 27, 215 225.
21. Maeda, M., Itami, T., Furumoto, A., Hennig, O., Imamura, T., Kondo, M., Hirono, I., Aoki, T et al. (1998) Detection of penaeid rod-shaped DNA virus (PRDV) in wild-caught shrimp and other crustaceans. Fish Pathol 33, 373 380.
22. Mayo, M.A. (2002) A summary of taxonomic changes recently approved by ICTV. Arch Virol 147, 1655 1663.
23. Mekata, T., Kono, T., Savan, R., Sakai, M., Kasornchandra, J., Yoshida, T. Itami, T. (2006) Detection of yellow head virus in shrimp by loop-mediated isothermal amplification (LAMP). J Virol Methods 135, 151 156.
24. Mori, Y., Nagamine, K., Tomita, N. Notomi, T. (2001) Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Biochem Biophys Res Commun 289, 150 154.
25. Mori, Y., Kitao, M., Tomita, N. Notomi, T. (2004) Real-time turbidimetry of LAMP reaction for quantifying template DNA. J Biochem Biophys Methods 59, 145 157.
26. Musthaq, S.S., Sudhakaran, R., Ishaq Ahmed, V.P., Balasubramanian, G. Sahul Hameed, A.S. (2006) Variability in the tandem repetitive DNA sequences of white spot syndrome virus (WSSV) genome and suitability of VP28 gene to detect different isolates of WSSV from India. Aquaculture 256, 34 41.
27. Nadala, E.C.J. Loh, P.C. (2000) Dot-blot nitrocellulose enzyme immunoassays for the detection of white-spot virus and yellow-head virus of penaeid shrimp. J Virol Methods 84, 175 179.
28. Nagamine, K., Hase, T. Notomi, T. (2002) Accelerated reaction by loop mediated isothermal amplification using loop primers. Mol Cell Probes 16, 223 229.
29. Nakano, H., Koube, H., Umezawa, S., Momoyama, K., Hiraoka, M., Inouye, K. Oseko, N. (1994) Mass mortalities of cultured kuruma shrimp, Penaeus japonicus, in Japan in 1993: epizootilogical survey and infection trials. Fish Pathol 29, 135 139.
30. Natividad, K.D.T., Hagio, H., Tanaka, M., Nomura, N. Matsumura, M. (2007) White spot syndrome virus (WSSV) inactivation in Penaeus japonicus using purified monoclonal antibody targeting viral envelope protein. Aquaculture 269, 54 62.
31. Natividad, K.D., Nomura, N. Matsumura, M. (2008) Detection of White spot syndrome virus DNA in pond soil using a 2-step nested PCR. J Virol Methods 149, 28 34.
32. Notomi, T., Okayama, H., Masubuchi, H., Yonekawa, T., Watanabe, K., Amino, N. Hase, T. (2000) Loop-mediated isothermal amplification of DNA. Nucleic Acid Res 28, E63.
33. Okumura, T., Nagai, F., Yamamoto, S., Oomura, H., Inouye, K., Ito, M. Sawada, H. (2005) Detection of white spot syndrome virus (WSSV) from hemolymph of Penaeid shrimps Penaeus japonicus by reverse passive latex agglutination assay using high-density latex particles. J Virol Methods 124, 143 148.
34. Parida, M., Posadas, G., Inoue, S., Hasebe, F. Morita, K. (2004) Real-time reverse transcription loop-mediated isothermal amplification for rapid detection of West Nile virus. J Clin Virol 42, 257 263.
35. Parida, M., Horioke, K., Ishida, H., Dash, P.K., Saxena, P., Jana, A.M., Islam, M.A., Inoue, S. et al. (2005) Rapid detection and differentiation of dengue virus serotypes by a real-time reverse transcription-loop-mediated isothermal amplification assay. J Clin Virol 43, 2895 2903.
36. Pillai, D., Bonami, J.R. Sri Widada, J. (2006) Rapid detection of Macrobrachium rosenbergii nodavirus (MrNV) and extra small virus (XSV), the pathogenic agents of white tail disease of Macrobrachium rosenbergii (De Man), by loop-mediated isothermal amplification. J Fish Dis 29, 275 283.
37. Poon, L.L., Wong, B.W., Chan, K.H., Ng, S.S., Yuen, K.Y., Guan, Y. Peiris, J.S. (2005) Evaluation of real-time reverse transcriptase PCR and real-time loop-mediated amplification assays for severe acute respiratory syndrome coronavirus detection. J Clin Microbiol 43, 3457 3459.
38. Savan, R., Kono, T., Itami, T. Sakai, M. (2005) Loop-mediated isothermal amplification: an emerging technology for detection of fish and shellfish pathogens. J Fish Dis 28, 573 581.
39. Sritunyalucksana, K., Srisala, J., McColl, K., Nielsen, L. Flegel, T.W. (2006) Comparison of PCR testing methods for white spot syndrome virus (WSSV) infections in penaeid shrimp. Aquaculture 255, 95 104.
40. Sudhakaran, R., Mekata, T., Kono, T., Supamattaya, K., Linh, G.T.H., Sakai, M. Itami, T. (2008c) Rapid detection and quantification of infectious hypodermal and hematopoietic necrosis virus (IHHNV) by real-time loop-mediated isothermal amplification. Fish Pathol (Communicated).
41. Sun, Z.F., Hu, C.Q., Ren, C.H. Shen, Q. (2006) Sensitive and rapid detection of infectious hypodermal and hematopoietic necrosis virus (IHHNV) in shrimps by loop-mediated isothermal amplification. J Virol Methods 131, 41 46.
42. Syed Musthaq, S., Sudhakaran, R., Balasubramanian, G. Sahul Hameed, A.S. (2006) Experimental transmission and tissue tropism of white spot syndrome virus (WSSV) in two species of lobsters, Panulirus homarus and Panulirus ornatus. J Invertebr Pathol 93, 75 80.
43. Takahashi, Y., Itami, T., Kondo, M., Maeda, M., Fujii, R., Tomonaga, S., Supamattaya, K. Boonyaratpalin, S. (1994) Electron microscopic evidence of bacilliform virus infection in Kuruma shrimp (Penaeus japonicus). Fish Pathol 29, 121 125.
44. Takahashi, Y., Itami, T., Maeda, M., Suzuki, N., Kasornchandra, J., Supamattaya, K., Khaongpradiot, R., Boonyaratpalin, S. et al. (1996) Polymerase chain reaction (PCR) amplification of bacilliform virus (RV-PJ) DNA in Penaeus japonicus bate and systemic ectodermal and mesodermal baculovirus (SEMBV) DNA in Penaeus monodon Fabricius. J Fish Diseases 19, 399 403.
45. Tapay, L.M., Nadala, E.C., Jr. Loh, P.C. (1999) A polymerase chain reaction protocol for the detection of various geographical isolates of white spot virus. J Virol Methods 82, 39 43.
46. Teng, P.H., Chen, C.L., Sung, P.F., Lee, F.C., Ou, B.R. Lee, P.Y. (2007) Specific detection of reverse transcription-loop-mediated isothermal amplification amplicons for Taura syndrome virus by colorimetric dot-blot hybridization. J Virol Methods 146, 317 326.
47. Toriniwa, H. Komiya, T. (2006) Rapid detection and quantification of Japanese encephalitis virus by real-time reverse transcription loop-mediated isothermal amplification. Microbiol Immunol 50, 379 387.
48. Wang, C.S., Tsai, Y.J. Chen, S.N. (1998b) Detection of white spot disease virus (WSDV) infection in shrimp using in situ hybridization. J Invertebr Pathol 72, 170 173.
49. Wongteerasupaya, C., Vickers, J.E., Sriurairatana, S., Nash, G.L., Akarajamorn, A., Boonsaeng, V., Panyim, S., Tassankajon, A. et al. (1995) Anon-occluded, systemic baculovirus that occurs in cells of ectodermal and mesodermal origin and causes high mortality in black tiger prawn Penaeus monodon. Dis Aquat Organ 21, 69 77.
50. Yang, F., He, J., Lin, X., Li, Q., Pan, D., Zhang, X. Xu, X. (2001) Complete genome sequence of the shrimp white spot bacilliform virus. J Virol 75, 11811 11820.
51. Yoneyama, T., Kiyohara, T., Shimasaki, N., Kobayashi, G., Ota, Y., Notomi, T., Totsuka, A. Wakita, T. (2007) Rapid and real-time detection of hepatitis A virus by reverse transcription loop-mediated isothermal amplification assay. J Virol Methods 145, 162 168.
52. Yuan, L., Zhang, X., Chang, M., Jia, C., Hemmingsen, S.M. Dai, H. (2007) A new fluorescent quantitative PCR-based in vitro neutralization assay for white spot syndrome virus. J Virol Methods 146, 96 103.