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Volumn 227, Issue C, 2009, Pages 77-95

Modelling Biological Compartments in Bio-PEPA

Author keywords

biological compartments; process algebras; Systems biology

Indexed keywords

ALGEBRA; BIOLOGICAL MEMBRANES; BIOLOGY; CALCIUM; CYTOLOGY; DIGITAL SIGNAL PROCESSING; LINGUISTICS; LOCATION; QUERY LANGUAGES;

EID: 58149293181     PISSN: 15710661     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.entcs.2008.12.105     Document Type: Article
Times cited : (32)

References (19)
  • 2
    • 58149313814 scopus 로고    scopus 로고
    • P. Ballarini, R. Mardare, and I. Mura. Analysing Biochemical Oscillation through Probabilistic Model Checking. In Proc. of FBTC 2008, To appear in ENTCS, 2008
    • P. Ballarini, R. Mardare, and I. Mura. Analysing Biochemical Oscillation through Probabilistic Model Checking. In Proc. of FBTC 2008, To appear in ENTCS, 2008
  • 3
    • 0030965914 scopus 로고    scopus 로고
    • Complex intracellular calcium oscillations: A theoretical exploration of possible mechanisms
    • Borghans J.A.M., Dupont G., and Goldbeter A. Complex intracellular calcium oscillations: A theoretical exploration of possible mechanisms. Biophysical Chemistry 66 1 (1997) 25-41
    • (1997) Biophysical Chemistry , vol.66 , Issue.1 , pp. 25-41
    • Borghans, J.A.M.1    Dupont, G.2    Goldbeter, A.3
  • 4
    • 26444592298 scopus 로고    scopus 로고
    • Brane Calculi - Interactions of Biological Membranes
    • Proceedings of Computational Methods in Systems Biology. CMSB'04
    • Cardelli L. Brane Calculi - Interactions of Biological Membranes. Proceedings of Computational Methods in Systems Biology. CMSB'04. LNCS volume 3082 (2005) 257-278
    • (2005) LNCS , vol.3082 , pp. 257-278
    • Cardelli, L.1
  • 5
    • 33845214005 scopus 로고    scopus 로고
    • Modelling Cellular Processes Using Membrane Systems with Peripheral and Integral Proteins
    • Proc. of CMSB 2006
    • Cavaliere M., and Sedwards S. Modelling Cellular Processes Using Membrane Systems with Peripheral and Integral Proteins. Proc. of CMSB 2006. LNCS volume 4210 (2006) 108-126
    • (2006) LNCS , vol.4210 , pp. 108-126
    • Cavaliere, M.1    Sedwards, S.2
  • 6
    • 58149295328 scopus 로고    scopus 로고
    • Ciobanu G., Pérez-Jiménez M.J., and Pǎun G. (Eds), Springer
    • In: Ciobanu G., Pérez-Jiménez M.J., and Pǎun G. (Eds). Applications of Membrane Computing. Natural Computing Series (2006), Springer
    • (2006) Natural Computing Series
  • 7
    • 58149295775 scopus 로고    scopus 로고
    • F. Ciocchetta and J. Hillston. Bio-PEPA: a framework for the modelling and analysis of biological systems, 2008. School of Informatics University of Edinburgh Technical Report EDI-INF-RR-1231
    • F. Ciocchetta and J. Hillston. Bio-PEPA: a framework for the modelling and analysis of biological systems, 2008. School of Informatics University of Edinburgh Technical Report EDI-INF-RR-1231
  • 8
    • 43049179364 scopus 로고    scopus 로고
    • Bio-PEPA: an extension of the process algebra PEPA for biochemical networks
    • Proc. of FBTC 2007
    • Ciocchetta F., and Hillston J. Bio-PEPA: an extension of the process algebra PEPA for biochemical networks. Proc. of FBTC 2007. ENTCS 194 (2008) 103-117
    • (2008) ENTCS , vol.194 , pp. 103-117
    • Ciocchetta, F.1    Hillston, J.2
  • 9
    • 45749111042 scopus 로고    scopus 로고
    • The BlenX Language: A Tutorial
    • SFM-Bio 2008
    • Demattè L., Romanel A., and Priami C. The BlenX Language: A Tutorial. SFM-Bio 2008. LNCS volume 5016 (2008) 313-365
    • (2008) LNCS , vol.5016 , pp. 313-365
    • Demattè, L.1    Romanel, A.2    Priami, C.3
  • 10
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie D.T. Exact stochastic simulation of coupled chemical reactions. Journal of Physical Chemistry 81 25 (1977) 2340-2361
    • (1977) Journal of Physical Chemistry , vol.81 , Issue.25 , pp. 2340-2361
    • Gillespie, D.T.1
  • 11
    • 38149030950 scopus 로고    scopus 로고
    • Modeling Static Biological Compartments with Beta-binders
    • Proc. of Algebraic Biology. AB 2007
    • Guerriero M.L., Priami C., and Romanel A. Modeling Static Biological Compartments with Beta-binders. Proc. of Algebraic Biology. AB 2007. LNCS volume 4545 (2007) 247-261
    • (2007) LNCS , vol.4545 , pp. 247-261
    • Guerriero, M.L.1    Priami, C.2    Romanel, A.3
  • 14
    • 33745752640 scopus 로고    scopus 로고
    • Cellular growth and division in the Gillespie algorithm
    • Lu T., Volfson D., Tsimring L., and Hasty J. Cellular growth and division in the Gillespie algorithm. Systems Biology 1 1 (2004) 121-128
    • (2004) Systems Biology , vol.1 , Issue.1 , pp. 121-128
    • Lu, T.1    Volfson, D.2    Tsimring, L.3    Hasty, J.4
  • 16
    • 26444448026 scopus 로고    scopus 로고
    • Beta binders for biological interactions
    • Proceedings of Computational Methods in Systems Biology. CMSB'04, Springer
    • Priami C., and Quaglia P. Beta binders for biological interactions. Proceedings of Computational Methods in Systems Biology. CMSB'04. LNCS volume 3082 (2005), Springer 20-33
    • (2005) LNCS , vol.3082 , pp. 20-33
    • Priami, C.1    Quaglia, P.2
  • 17
    • 58149291527 scopus 로고    scopus 로고
    • PRISM web site
    • PRISM web site. http://www.prismmodelchecker.org/
  • 19
    • 38649136925 scopus 로고    scopus 로고
    • Efficient stochastic simulation of biological systems with multiple variable volumes
    • Proc. of FBTC 2007
    • Versari C., and Busi N. Efficient stochastic simulation of biological systems with multiple variable volumes. Proc. of FBTC 2007. ENTCS 194 (2008)
    • (2008) ENTCS , vol.194
    • Versari, C.1    Busi, N.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.