-
1
-
-
7444234286
-
Getting the noise out of gene arrays
-
10.1126/science.306.5696.630 15499004
-
Marshall E Getting the noise out of gene arrays Science 2004, 306(5696):630-631. 10.1126/science.306.5696.630 15499004
-
(2004)
Science
, vol.306
, Issue.5696
, pp. 630-631
-
-
Marshall, E.1
-
2
-
-
33748295678
-
Microarrays: Quality control
-
10.1038/4421067a 16943838
-
Eisenstein M Microarrays: Quality control Nature 2006, 442(7106):1067-1070. 10.1038/4421067a 16943838
-
(2006)
Nature
, vol.442
, Issue.7106
, pp. 1067-1070
-
-
Eisenstein, M.1
-
3
-
-
33748491517
-
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
-
10.1038/nbt1239 16964229
-
Shi L Reid LH Jones WD Shippy R Warrington JA Baker SC Collins PJ de Longueville F Kawasaki ES Lee KY et al. The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements Nat Biotechnol 2006, 24(9):1151-1161. 10.1038/ nbt1239 16964229
-
(2006)
Nat Biotechnol
, vol.24
, Issue.9
, pp. 1151-1161
-
-
Shi, L.1
Reid, L.H.2
Jones, W.D.3
Shippy, R.4
Warrington, J.A.5
Baker, S.C.6
Collins, P.J.7
de Longueville, F.8
Kawasaki, E.S.9
Lee, K.Y.10
-
4
-
-
27144548491
-
The External RNA Controls Consortium: A progress report
-
10.1038/nmeth1005-731 16179916
-
Baker SC Bauer SR Beyer RP Brenton JD Bromley B Burrill J Causton H Conley MP Elespuru R Fero M et al. The External RNA Controls Consortium: A progress report Nat Methods 2005, 2(10):731-734. 10.1038/nmeth1005-731 16179916
-
(2005)
Nat Methods
, vol.2
, Issue.10
, pp. 731-734
-
-
Baker, S.C.1
Bauer, S.R.2
Beyer, R.P.3
Brenton, J.D.4
Bromley, B.5
Burrill, J.6
Causton, H.7
Conley, M.P.8
Elespuru, R.9
Fero, M.10
-
6
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
100354 11842121 10.1093/nar/30.4.e15
-
Yang YH Dudoit S Luu P Lin DM Peng V Ngai J Speed TP Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation Nucleic Acids Res 2002, 30(4):e15. 100354 11842121 10.1093/nar/30.4.e15
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.4
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
-
7
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
-
14539 11134512 10.1073/pnas.011404098
-
Li C Wong WH Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection Proc Natl Acad Sci USA 2001, 98(1):31-36. 14539 11134512 10.1073/pnas.011404098
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, Issue.1
, pp. 31-36
-
-
Li, C.1
Wong, W.H.2
-
8
-
-
0035875553
-
Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
-
55725 11410663 10.1093/nar/29.12.2549
-
Tseng GC Oh MK Rohlin L Liao JC Wong WH Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects Nucleic Acids Res 2001, 29(12):2549-2557. 55725 11410663 10.1093/nar/29.12.2549
-
(2001)
Nucleic Acids Res
, vol.29
, Issue.12
, pp. 2549-2557
-
-
Tseng, G.C.1
Oh, M.K.2
Rohlin, L.3
Liao, J.C.4
Wong, W.H.5
-
9
-
-
0037200201
-
A new non-linear normalization method for reducing variability in DNA microarray experiments
-
126873 research0048 12225587 10.1186/gb-2002-3-9-research0048
-
Workman C Jensen LJ Jarmer H Berka R Gautier L Nielser HB Saxild HH Nielsen C Brunak S Knudsen S A new non-linear normalization method for reducing variability in DNA microarray experiments Genome Biol 2002, 3(9):rEsearch0048. 126873 12225587 10.1186/gb-2002-3-9-research0048
-
(2002)
Genome Biol
, vol.3
, Issue.9
-
-
Workman, C.1
Jensen, L.J.2
Jarmer, H.3
Berka, R.4
Gautier, L.5
Nielser, H.B.6
Saxild, H.H.7
Nielsen, C.8
Brunak, S.9
Knudsen, S.10
-
10
-
-
0842321044
-
Normalization and analysis of cDNA microarrays using within-array replications applied to neuroblastoma cell response to a cytokine
-
337019 14739336 10.1073/pnas.0307557100
-
Fan J Tam P Woude GV Ren Y Normalization and analysis of cDNA microarrays using within-array replications applied to neuroblastoma cell response to a cytokine Proc Natl Acad Sci USA 2004, 101(5):1135-1140. 337019 14739336 10.1073/pnas.0307557100
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.5
, pp. 1135-1140
-
-
Fan, J.1
Tam, P.2
Woude, G.V.3
Ren, Y.4
-
11
-
-
29144463142
-
Removing intensity effects and identifying significant genes for Affymetrix arrays in macrophage migration inhibitory factor-suppressed neuroblastoma cells
-
1308934 16314559 10.1073/pnas.0509175102
-
Fan J Chen Y Chan HM Tam PK Ren Y Removing intensity effects and identifying significant genes for Affymetrix arrays in macrophage migration inhibitory factor-suppressed neuroblastoma cells Proc Natl Acad Sci USA 2005, 102(49):17751-17756. 1308934 16314559 10.1073/ pnas.0509175102
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.49
, pp. 17751-17756
-
-
Fan, J.1
Chen, Y.2
Chan, H.M.3
Tam, P.K.4
Ren, Y.5
-
12
-
-
13244292280
-
A robust two-way semilinear model for normalization of cDNA microarray data
-
549200 15663789 10.1186/1471-2105-6-14
-
Wang D Huang J Xie H Manzella L Soares MB A robust two-way semilinear model for normalization of cDNA microarray data BMC Bioinformatics 2005, 6:14. 549200 15663789 10.1186/1471-2105-6-14
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 14
-
-
Wang, D.1
Huang, J.2
Xie, H.3
Manzella, L.4
Soares, M.B.5
-
14
-
-
22144461265
-
Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset
-
551536 15693945 10.1186/gb-2005-6-2-r16
-
Choe SE Boutros M Michelson AM Church GM Halfon MS Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset Genome Biol 2005, 6(2):R16. 551536 15693945 10.1186/ gb-2005-6-2-r16
-
(2005)
Genome Biol
, vol.6
, Issue.2
-
-
Choe, S.E.1
Boutros, M.2
Michelson, A.M.3
Church, G.M.4
Halfon, M.S.5
-
15
-
-
33845562634
-
Feature-level exploration of a published Affymetrix GeneChip control dataset
-
1779590 16953902 10.1186/gb-2006-7-8-404
-
Irizarry RA Cope LM Wu Z Feature-level exploration of a published Affymetrix GeneChip control dataset Genome Biol 2006, 7(8):404. 1779590 16953902 10.1186/gb-2006-7-8-404
-
(2006)
Genome Biol
, vol.7
, Issue.8
, pp. 404
-
-
Irizarry, R.A.1
Cope, L.M.2
Wu, Z.3
-
17
-
-
0037188875
-
Normalization and analysis of DNA microarray data by self-consistency and local regression
-
RESEARCH0037. 126242 12184811 10.1186/gb-2002-3-7-research0037
-
Kepler TB Crosby L Morgan KT Normalization and analysis of DNA microarray data by self-consistency and local regression Genome Biol 2002, 3(7):RESEARCH0037. 126242 12184811 10.1186/gb-2002-3-7-research0037
-
(2002)
Genome Biol
, vol.3
-
-
Kepler, T.B.1
Crosby, L.2
Morgan, K.T.3
-
19
-
-
78049298143
-
-
Mathworks http://www.mathworks.com
-
Mathworks
-
-
-
20
-
-
33645505591
-
A novel normalization method for effective removal of systematic variation in microarray data
-
1415275 16528099 10.1093/nar/gkl024
-
Chua SW Vijayakumar P Nissom PM Yam CY Wong VV Yang H A novel normalization method for effective removal of systematic variation in microarray data Nucleic Acids Res 2006, 34(5):e38. 1415275 16528099 10.1093/nar/gkl024
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.5
-
-
C.hua, S.W.1
Vijayakumar, P.2
Nissom, P.M.3
Yam, C.Y.4
Wong, V.V.5
Yang, H.6
-
21
-
-
21844526974
-
Measuring skewness with respect to the mode
-
10.2307/2684808
-
Arnold BC Groeneveld RA Measuring skewness with respect to the mode Amer statist 1995, 49:34-38. 10.2307/2684808
-
(1995)
Amer Statist
, vol.49
, pp. 34-38
-
-
Arnold, B.C.1
Groeneveld, R.A.2
-
22
-
-
34548761943
-
Selection and validation of normalization methods for c-DNA microarrays using within-array replications
-
10.1093/bioinformatics/btm361 17660210
-
Fan J Niu Y Selection and validation of normalization methods for c-DNA microarrays using within-array replications Bioinformatics 2007, 23(18):2391-2398. 10.1093/bioinformatics/btm361 17660210
-
(2007)
Bioinformatics
, vol.23
, Issue.18
, pp. 2391-2398
-
-
Fan, J.1
Niu, Y.2
-
23
-
-
84886765612
-
-
Affymetrix http://www.affymetrix.com
-
Affymetrix
-
-
|