메뉴 건너뛰기




Volumn 379, Issue 1, 2009, Pages 92-97

Crystal structure of human adenylate kinase 4 (L171P) suggests the role of hinge region in protein domain motion

Author keywords

Adenylate kinase; Conformational change; Crystal structure; Domain motion; Hinge

Indexed keywords

ADENYLATE KINASE; ADENYLATE KINASE 4; CORE BINDING FACTOR; CORE PROTEIN; LID PROTEIN; UNCLASSIFIED DRUG;

EID: 58149280217     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2008.12.012     Document Type: Article
Times cited : (16)

References (35)
  • 1
    • 2442567233 scopus 로고    scopus 로고
    • Identification of specific interactions that drive ligand-induced closure in five enzymes with classic domain movements
    • Hayward S. Identification of specific interactions that drive ligand-induced closure in five enzymes with classic domain movements. J. Mol. Biol. 339 (2004) 1001-1021
    • (2004) J. Mol. Biol. , vol.339 , pp. 1001-1021
    • Hayward, S.1
  • 2
    • 0002555264 scopus 로고
    • Adenylate control and the adenylate energy charge
    • Atkinson D.E. (Ed), Academic Press, New York
    • Atkinson D.E. Adenylate control and the adenylate energy charge. In: Atkinson D.E. (Ed). Cellular Energy Metabolism and its Regulation (1977), Academic Press, New York 85-107
    • (1977) Cellular Energy Metabolism and its Regulation , pp. 85-107
    • Atkinson, D.E.1
  • 3
    • 0015496635 scopus 로고
    • Isoenzymes of adenylate kinase in human tissue
    • Khoo J.C., and Russell P.J. Isoenzymes of adenylate kinase in human tissue. Biochim. Biophys. Acta 268 (1972) 98-101
    • (1972) Biochim. Biophys. Acta , vol.268 , pp. 98-101
    • Khoo, J.C.1    Russell, P.J.2
  • 4
    • 0026079373 scopus 로고
    • The refined structure of the complex between adenylate kinase from beef heart mitochondrial matrix and its substrate AMP at 1.85 Å resolution
    • Diederichs K., and Schulz G.E. The refined structure of the complex between adenylate kinase from beef heart mitochondrial matrix and its substrate AMP at 1.85 Å resolution. J. Mol. Biol. 217 (1991) 541-549
    • (1991) J. Mol. Biol. , vol.217 , pp. 541-549
    • Diederichs, K.1    Schulz, G.E.2
  • 5
    • 0029897810 scopus 로고    scopus 로고
    • The structure of bovine mitochondrial adenylate kinase: comparison with isoenzymes in other compartments
    • Schlauderer G.J., and Schulz G.E. The structure of bovine mitochondrial adenylate kinase: comparison with isoenzymes in other compartments. Protein Sci. 5 (1996) 434-441
    • (1996) Protein Sci. , vol.5 , pp. 434-441
    • Schlauderer, G.J.1    Schulz, G.E.2
  • 6
    • 0026544877 scopus 로고
    • Structure of the complex between adenylate kinase from Escherichia coli and the inhibitor Ap5A refined at 1.9 Å resolution. A model for a catalytic transition state
    • Muller C.W., and Schulz G.E. Structure of the complex between adenylate kinase from Escherichia coli and the inhibitor Ap5A refined at 1.9 Å resolution. A model for a catalytic transition state. J. Mol. Biol. 224 (1992) 159-177
    • (1992) J. Mol. Biol. , vol.224 , pp. 159-177
    • Muller, C.W.1    Schulz, G.E.2
  • 7
    • 0028338283 scopus 로고
    • The closed conformation of a highly flexible protein: the structure of E. coli adenylate kinase with bound AMP and AMPPNP
    • Berry M.B., Meador B., Bilderback T., Liang P., Glaser M., and Phillips Jr. G.N. The closed conformation of a highly flexible protein: the structure of E. coli adenylate kinase with bound AMP and AMPPNP. Proteins 19 (1994) 183-198
    • (1994) Proteins , vol.19 , pp. 183-198
    • Berry, M.B.1    Meador, B.2    Bilderback, T.3    Liang, P.4    Glaser, M.5    Phillips Jr., G.N.6
  • 8
    • 0028998836 scopus 로고
    • High-resolution structures of adenylate kinase from yeast ligated with inhibitor Ap5A, showing the pathway of phosphoryl transfer
    • Abele U., and Schulz G.E. High-resolution structures of adenylate kinase from yeast ligated with inhibitor Ap5A, showing the pathway of phosphoryl transfer. Protein Sci. 4 (1995) 1262-1271
    • (1995) Protein Sci. , vol.4 , pp. 1262-1271
    • Abele, U.1    Schulz, G.E.2
  • 10
    • 3142653228 scopus 로고    scopus 로고
    • Structures and analysis of highly homologous psychrophilic, mesophilic, and thermophilic adenylate kinases
    • Bae E., and Phillips Jr. G.N. Structures and analysis of highly homologous psychrophilic, mesophilic, and thermophilic adenylate kinases. J. Biol. Chem. 279 (2004) 28202-28208
    • (2004) J. Biol. Chem. , vol.279 , pp. 28202-28208
    • Bae, E.1    Phillips Jr., G.N.2
  • 11
    • 0347357932 scopus 로고    scopus 로고
    • Structural and dynamic studies on ligand-free adenylate kinase from Mycobacterium tuberculosis revealed a closed conformation that can be related to the reduced catalytic activity
    • Miron S., Munier-Lehmann H., and Craescu C.T. Structural and dynamic studies on ligand-free adenylate kinase from Mycobacterium tuberculosis revealed a closed conformation that can be related to the reduced catalytic activity. Biochemistry 43 (2004) 67-77
    • (2004) Biochemistry , vol.43 , pp. 67-77
    • Miron, S.1    Munier-Lehmann, H.2    Craescu, C.T.3
  • 12
    • 0027506631 scopus 로고
    • Crystal structures of two mutants of adenylate kinase from Escherichia coli that modify the Gly-loop
    • Muller C.W., and Schulz G.E. Crystal structures of two mutants of adenylate kinase from Escherichia coli that modify the Gly-loop. Proteins 15 (1993) 42-49
    • (1993) Proteins , vol.15 , pp. 42-49
    • Muller, C.W.1    Schulz, G.E.2
  • 13
    • 0031450906 scopus 로고    scopus 로고
    • Structure, catalysis and supramolecular assembly of adenylate kinase from maize
    • Wild K., Grafmuller R., Wagner E., and Schulz G.E. Structure, catalysis and supramolecular assembly of adenylate kinase from maize. Eur. J. Biochem. 250 (1997) 326-331
    • (1997) Eur. J. Biochem. , vol.250 , pp. 326-331
    • Wild, K.1    Grafmuller, R.2    Wagner, E.3    Schulz, G.E.4
  • 14
    • 38349092279 scopus 로고    scopus 로고
    • Conformational transitions in adenylate kinase. Allosteric communication reduces misligation
    • Whitford P.C., Gosavi S., and Onuchic J.N. Conformational transitions in adenylate kinase. Allosteric communication reduces misligation. J. Biol. Chem. 283 (2008) 2042-2048
    • (2008) J. Biol. Chem. , vol.283 , pp. 2042-2048
    • Whitford, P.C.1    Gosavi, S.2    Onuchic, J.N.3
  • 15
    • 0027528934 scopus 로고
    • Domain closure in adenylate kinase. Joints on either side of two helices close like neighboring fingers
    • Gerstein M., Schulz G., and Chothia C. Domain closure in adenylate kinase. Joints on either side of two helices close like neighboring fingers. J. Mol. Biol. 229 (1993) 494-501
    • (1993) J. Mol. Biol. , vol.229 , pp. 494-501
    • Gerstein, M.1    Schulz, G.2    Chothia, C.3
  • 16
    • 36849039429 scopus 로고    scopus 로고
    • A hierarchy of timescales in protein dynamics is linked to enzyme catalysis
    • Henzler-Wildman K.A., Lei M., Thai V., Kerns S.J., Karplus M., and Kern D. A hierarchy of timescales in protein dynamics is linked to enzyme catalysis. Nature 450 (2007) 913-916
    • (2007) Nature , vol.450 , pp. 913-916
    • Henzler-Wildman, K.A.1    Lei, M.2    Thai, V.3    Kerns, S.J.4    Karplus, M.5    Kern, D.6
  • 18
    • 24644483073 scopus 로고    scopus 로고
    • Large amplitude conformational change in proteins explored with a plastic network model: adenylate kinase
    • Maragakis P., and Karplus M. Large amplitude conformational change in proteins explored with a plastic network model: adenylate kinase. J. Mol. Biol. 352 (2005) 807-822
    • (2005) J. Mol. Biol. , vol.352 , pp. 807-822
    • Maragakis, P.1    Karplus, M.2
  • 20
    • 0026693145 scopus 로고
    • Characterization of human adenylate kinase 3 (AK3) cDNA and mapping of the AK3 pseudogene to an intron of the NF1 gene
    • Xu G., O'Connell P., Stevens J., and White R. Characterization of human adenylate kinase 3 (AK3) cDNA and mapping of the AK3 pseudogene to an intron of the NF1 gene. Genomics 13 (1992) 537-542
    • (1992) Genomics , vol.13 , pp. 537-542
    • Xu, G.1    O'Connell, P.2    Stevens, J.3    White, R.4
  • 21
    • 0032570036 scopus 로고    scopus 로고
    • Identification of a novel adenylate kinase system in the brain: cloning of the fourth adenylate kinase
    • Yoneda T., Sato M., Maeda M., and Takagi H. Identification of a novel adenylate kinase system in the brain: cloning of the fourth adenylate kinase. Brain Res. Mol. Brain Res. 62 (1998) 187-195
    • (1998) Brain Res. Mol. Brain Res. , vol.62 , pp. 187-195
    • Yoneda, T.1    Sato, M.2    Maeda, M.3    Takagi, H.4
  • 23
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski Z., and Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276 (1997) 307-326
    • (1997) Methods Enzymol. , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 27
    • 0000243829 scopus 로고
    • PROCHECK: a program to check the stereochemical quality of protein structures
    • Laskowski R.A., MacArthur M.W., Moss D.S., and Valenti M. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26 (1993) 283-291
    • (1993) J. Appl. Crystallogr. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Valenti, M.4
  • 28
    • 0023887425 scopus 로고
    • Refined structure of porcine cytosolic adenylate kinase at 2.1 Å resolution
    • Dreusicke D., Karplus P.A., and Schulz G.E. Refined structure of porcine cytosolic adenylate kinase at 2.1 Å resolution. J. Mol. Biol. 199 (1988) 359-371
    • (1988) J. Mol. Biol. , vol.199 , pp. 359-371
    • Dreusicke, D.1    Karplus, P.A.2    Schulz, G.E.3
  • 29
    • 4043166269 scopus 로고    scopus 로고
    • Substrate-induced conformational changes in human UMP/CMP kinase
    • Segura-Pena D., Sekulic N., Ort S., Konrad M., and Lavie A. Substrate-induced conformational changes in human UMP/CMP kinase. J. Biol. Chem. 279 (2004) 33882-33889
    • (2004) J. Biol. Chem. , vol.279 , pp. 33882-33889
    • Segura-Pena, D.1    Sekulic, N.2    Ort, S.3    Konrad, M.4    Lavie, A.5
  • 30
    • 0036888353 scopus 로고    scopus 로고
    • Improvements in the analysis of domain motions in proteins from conformational change: DynDom version 1.50
    • Hayward S., and Lee R.A. Improvements in the analysis of domain motions in proteins from conformational change: DynDom version 1.50. J. Mol. Graph. Model. 21 (2002) 181-183
    • (2002) J. Mol. Graph. Model. , vol.21 , pp. 181-183
    • Hayward, S.1    Lee, R.A.2
  • 31
    • 0032006209 scopus 로고    scopus 로고
    • Systematic analysis of domain motions in proteins from conformational change: new results on citrate synthase and T4 lysozyme
    • Hayward S., and Berendsen H.J. Systematic analysis of domain motions in proteins from conformational change: new results on citrate synthase and T4 lysozyme. Proteins 30 (1998) 144-154
    • (1998) Proteins , vol.30 , pp. 144-154
    • Hayward, S.1    Berendsen, H.J.2
  • 32
    • 0008236102 scopus 로고
    • Adenosine-5′-diphosphate and Adenosine-5′-monophosphate
    • Bergmeyer H.U. (Ed), Academic Press, New York
    • Adam H. Adenosine-5′-diphosphate and Adenosine-5′-monophosphate. In: Bergmeyer H.U. (Ed). Methods of Enzymatic Analysis (1965), Academic Press, New York 573-577
    • (1965) Methods of Enzymatic Analysis , pp. 573-577
    • Adam, H.1
  • 33
    • 33646847035 scopus 로고    scopus 로고
    • Temporal transcriptome of mouse ATDC5 chondroprogenitors differentiating under hypoxic conditions
    • Chen L., Fink T., Ebbesen P., and Zachar V. Temporal transcriptome of mouse ATDC5 chondroprogenitors differentiating under hypoxic conditions. Exp. Cell Res. 312 (2006) 1727-1744
    • (2006) Exp. Cell Res. , vol.312 , pp. 1727-1744
    • Chen, L.1    Fink, T.2    Ebbesen, P.3    Zachar, V.4
  • 34
    • 33644864832 scopus 로고    scopus 로고
    • Investigation of proteomic biomarkers in in vivo hepatotoxicity study of rat liver: toxicity differentiation in hepatotoxicants
    • Yamamoto T., Kikkawa R., Yamada H., and Horii I. Investigation of proteomic biomarkers in in vivo hepatotoxicity study of rat liver: toxicity differentiation in hepatotoxicants. J. Toxicol. Sci. 31 (2006) 49-60
    • (2006) J. Toxicol. Sci. , vol.31 , pp. 49-60
    • Yamamoto, T.1    Kikkawa, R.2    Yamada, H.3    Horii, I.4
  • 35
    • 60349117755 scopus 로고    scopus 로고
    • Enzymatically inactive adenylate kinase 4 interacts with mitochondrial ADP/ATP translocase
    • 10.1016/j.biocel.2008.12.002
    • Liu R., Strom A.-L., Zhai J., Gal J., Bao S., Gong W., and Zhu H. Enzymatically inactive adenylate kinase 4 interacts with mitochondrial ADP/ATP translocase. Int. J. Biochem. Cell Biol. (2008) 10.1016/j.biocel.2008.12.002
    • (2008) Int. J. Biochem. Cell Biol.
    • Liu, R.1    Strom, A.-L.2    Zhai, J.3    Gal, J.4    Bao, S.5    Gong, W.6    Zhu, H.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.