Factors governing helix formation in peptides confined to carbon nanotubes

Nano Letters

Volumn 8, Issue 11, 2008, Pages 3702-3708

  O'Brien, Edward P ^a,b   Stan, George ^c   Thirumalai, D ^a   Brooks, Bernard R ^b  

^a Bldg 142   (United States)

^b NATIONAL HEART LUNG AND BLOOD INSTITUTE   (United States)

^c UNIVERSITY OF CINCINNATI   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMPHIPHILIC; CHEMICAL HETEROGENEITIES; COARSE-GRAINED; COMPLEX FUNCTIONS; FORMING SEQUENCES; HELICAL STATE; HELIX FORMATIONS; HYDROPHOBIC PATCHES; LANGEVIN DYNAMICS; NANOTUBE DIAMETERS; POLYALANINE; POLYMER THEORIES; POLYPEPTIDE CHAINS; SOLVENT CONDITIONS; STRUCTURE FORMATIONS;

AMINES; BIOPOLYMERS; CHEMICAL STABILITY; DYNAMICS; FORMING; HYDROPHOBICITY; PEPTIDES; POLYMERS; STABILITY; TUNNELS;

CARBON NANOTUBES;

CARBON NANOTUBE; PEPTIDE;

AMINO ACID SEQUENCE; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; HYDROPHOBICITY; MOLECULAR GENETICS; PROBABILITY; PROTEIN SECONDARY STRUCTURE;

AMINO ACID SEQUENCE; HYDROPHOBICITY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NANOTUBES, CARBON; PEPTIDES; PROBABILITY; PROTEIN STRUCTURE, SECONDARY;

EID: 58149277699     PISSN: 15306984     EISSN: None     Source Type: Journal    
DOI: 10.1021/nl8019328     Document Type: Article

References (36)

1. Nissen, P.; Hansen, J.; Ban, N.; Moore, P. B.; Steitz, T. A. Science 2000, 289, 920-929.
2. Eggers, D. K.; Valentine, J. S. Protein Sci. 2001, 10, 250-261.
3. Thirumalai, D.; Lorimer, G. H. Ann. Rev. Biophys. Biomol. Struc. 2001, 30, 245-269.
4. Woolhead, C. A.; McCormick, P. J.; Johnson, A. E. Cell 2004, 116, 725-736.
5. Groll, M.; Bochtler, M.; Brandstetter, H.; Clausen, T.; Huber, R. Chembiochem 2005, 6, 222-256.
6. Lu, J.; Deutsch, C. Biochem. 2005, 44, 8230-8243.
7. Lu, J.; Deutsch, C. Nat. Struc. Molec. Biol. 2005, 12, 1123-1129.
8. Hinnah, S. C.; Wagner, R.; Sveshnikova, R.; Harrer, R.; Soll, J. Biophys. J. 2002, 83, 899-911.
9. Muro, C.; Grigoriev, S. M.; Pietkiewicz, D.; Kinnally, K. W.; Campo, M. L. Biophys. J. 2003, 84, 2981-2989.
10. Hessa, T.; Kim, H.; Bihlmaier, K.; Lundin, C.; Boekel, J.; erson, H.; Nilsson, I.; White, S. H.; voh Heijne, G. Nature 2005, 433, 377-381.
11. Mohammad, M. M.; Prakash, S.; Matouschek, A.; Movileanu, L. J. Am. Chem. Soc. 2008, 130, 4081-4088.
12. Dekker, C. Nat. Nano. 2007, 2, 209-215.
13. Betancourt, M. R.; Thirumalai, D. J. Mol. Biol. 1999, 287, 627-644.
14. Zhou, H. X.; Dill, K. A. Biochemistry 2001, 40, 11289-11293.
15. Klimov, D. K.; Newfield, D.; Thirumalai, D. Proc. Natl. Acad. Sci. USA 2002, 99, 8019-8024.
16. Baumketner, A.; Jewett, A.; Shea, J. E. J. Mol. Biol. 2003, 332, 701-713.
17. Ziv, G.; Haran, G.; Thirumalai, D. Proc. Natl. Acad. Sci. USA 2005, 102, 18956-18961.
18. Cheung, M. S.; Klimov, D.; Thirumalai, D. Proc. Natl. Acad. Sci. USA 2005, 102, 4753-4758.
19. Cheung, M. S.; Thirumalai, D. J. Mol. Biol. 2006, 357, 632-643.
20. Sorin, E. J.; Pande, V. S. J. Am. Chem. Soc. 2006, 128, 6316-6317.
21. Elcock, A. H. PLOS Comp. Biol. 2006, 2, 824-841.
22. Minton, A. P. Biophys. J. 1992, 63, 1090-1100.
23. Zhou, H. X. J. Chem. Phys. 2007, 127, 245101.
24. Degrado, W. F.; Lear, J. D. J. Am. Chem. Soc. 1985, 107, 7684-7689.
25. Ho, S. P.; Degrado, W. F. J. Am. Chem. Soc. 1987, 109, 6751-6758.
26. Xiong, H.; Buckwalter, B. L.; Shieh, H. M.; Hecht, M. H. Proc. Natl. Acad. Sci. USA 1995, 92, 6349-6353.
27. Ziegler, J.; Sticht, H.; Marx, U. C.; Muller, W.; Rosch, P.; Schwarzinger, S. J. Biol. Chem. 2003, 278, 50175-50181.
28. Dima, R. L; Thirumalai, D. Proc. Natl. Acad. Sci. USA 2004, 101, 15335-15340.
29. Williams, S.; Causgrove, T. P.; Gilmanshin, R.; Fang, K. S.; Callender, R. H.; Woodruff, W. H.; Dyer, R. B. Biochemistry 1996, 35, 691-697.
30. Kumar, S.; Bansal, M. Biophys. J. 1998, 75, 1935-1944.
31. Honeycutt, J. D.; Thirumalai, D. Proc. Natl. Acad. Sci. USA 1990, 87, 3526-3529.
32. Veitshans, T.; Klimov, D.; Thirumalai, D. Fold. Des. 1997, 2, 1-22.
33. Brooks, B. R.; Bruccoleri, R. E.; Olafson, B. D.; States, D. J.; Swaminathan, S.; Karplus, M. J. Comput. Chem. 1983, 4, 187-217.
34. Morrison, G.; Thirumalai, D. J. Chem. Phys. 2005, 122, 194907.
35. Voss, N. R.; Gerstein, M.; Steitz, T. A.; Moore, P. B. J. Mol. Biol. 2006, 360, 893-906.
36. Guo, Z.; Thirumalai, D. J. Mol. Biol. 1996, 263, 323-343.