Identification of c-type cytochromes involved in anaerobic, bacterial U(IV) oxidation

Biodegradation

Volumn 20, Issue 1, 2009, Pages 45-53

  Beller, Harry R ^a,b   Legler, Tina C ^a   Bourguet, Feliza ^a   Letain, Tracy E ^a   Kane, Staci R ^a   Coleman, Matthew A ^a  

^a LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

^b LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

Author keywords

Anaerobic; Cytochrome; Genetic system; Thiobacillus denitrificans; Uranium

Indexed keywords

ANAEROBIC; BACTERIAL REDUCTIONS; BACTERIAL SPECIES; COMPLEMENTATION; CONTAMINATED GROUNDWATERS; CYTOCHROME; GENES ENCODING; GENETIC SYSTEM; GEOBACTER METALLIREDUCENS; IN SITU REMEDIATIONS; METABOLIC PROCESSES; THIOBACILLUS DENITRIFICANS; U OXIDATIONS; ULTRACENTRIFUGATION;

ACTINIDES; BACTERIOLOGY; BIOCHEMISTRY; CENTRIFUGATION; ENCODING (SYMBOLS); GENES; GROUNDWATER; GROUNDWATER POLLUTION; HYDROGEOLOGY; OXIDATION; OXIDE MINERALS; POLLUTION; REMEDIATION; SILICA; SILICATE MINERALS; SUGAR (SUCROSE); TRANSURANIUM ELEMENTS; URANIUM;

URANIUM COMPOUNDS;

CYTOCHROME C; NITRATE; URANIUM;

ANOXIC CONDITIONS; BACTERIUM; BIOCHEMISTRY; BIODEGRADATION; CENTRIFUGE; CYTOCHROME; GENE EXPRESSION; GROUNDWATER POLLUTION; IDENTIFICATION METHOD; METABOLISM; NITRATE; OXIDATION; RADIOACTIVE POLLUTION; URANIUM;

ANAEROBIC GROWTH; ARTICLE; BIOREMEDIATION; METABOLISM; OXIDATION REDUCTION REACTION; THIOBACILLUS; ULTRACENTRIFUGATION;

ANAEROBIOSIS; BIODEGRADATION, ENVIRONMENTAL; CYTOCHROME C GROUP; NITRATES; OXIDATION-REDUCTION; THIOBACILLUS; ULTRACENTRIFUGATION; URANIUM;

BACTERIA (MICROORGANISMS); GEOBACTER; GEOBACTER METALLIREDUCENS; THIOBACILLUS DENITRIFICANS;

EID: 58149185455     PISSN: 09239820     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10532-008-9198-y     Document Type: Article

References (19)

1. SF Altschul TL Madden AA Schaffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402
2. HR Beller 2005 Anaerobic, nitrate-dependent oxidation of U(IV) oxide minerals by the chemolithoautotrophic bacterium Thiobacillus denitrificans Appl Environ Microbiol 71 2170 2174
3. HR Beller SR Kane TC Legler PJJ Alvarez 2002 A real-time polymerase chain reaction method for monitoring anaerobic, hydrocarbon-degrading bacteria based on a catabolic gene Environ Sci Technol 36 3977 3984
4. HR Beller PS Chain TE Letain A Chakicherla FW Larimer PM Richardson MA Coleman AP Wood DP Kelly 2006 The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans J Bacteriol 188 1473 1488
5. HR Beller TE Letain A Chakicherla SR Kane TC Legler MA Coleman 2006 Whole-genome transcriptional analysis of chemolithoautotrophic thiosulfate oxidation by Thiobacillus denitrificans under aerobic versus denitrifying conditions J Bacteriol 188 7005 7015
6. DW Dorward 1993 Detection and quantitation of heme-containing proteins by chemiluminescence Anal Biochem 209 219 223
7. KT Finneran ME Housewright DR Lovley 2002 Multiple influences of nitrate on uranium solubility during bioremediation of uranium-contaminated subsurface sediments Environ Microbiol 4 510 516
8. 1) and copper-containing nitrous oxide reductase from Thiobacillus denitrificans Arch Microbiol 165 55 61
9. 4 in bacterial respiration. Cellular location and selective removal from membranes Biochem J 262 233 240
10. JF Huntley PG Conley KE Hagman MV Norgard 2007 Characterization of Francisella tularensis outer membrane proteins J Bacteriol 189 561 574
11. 4 from Pseudomonas stutzeri determined at 2.2Å resolution Structure 5 203 216
12. RA Larsen MG Thomas K Postle 1999 Protonmotive force, ExbB and ligand-bound FepA drive conformational changes in TonB Mol Microbiol 31 1809 1824
13. 4 Biochim Biophys Acta 808 213 218
14. TE Letain SR Kane TC Legler EP Salazar PG Agron HR Beller 2007 Development of a genetic system for the chemolithoautotrophic bacterium Thiobacillus denitrificans Appl Environ Microbiol 73 3265 3271
15. CJ Reedy MM Elvekrog BR Gibney 2008 Development of a heme protein structure-electrochemical function database Nucleic Acids Res 36 D307 D313
16. JM Senko JD Istok JM Suflita LR Krumholz 2002 In-situ evidence for uranium immobilization and remobilization Environ Sci Technol 36 1491 1496
17. CM Tsai CE Frasch 1982 A sensitive silver stain for detecting lipopolysaccharides in polyacrylamide gels Anal Biochem 119 115 119
18. U.S. Department of Energy (2003) Bioremediation of metals and radionuclides, 2nd edn. Lawrence Berkeley National Laboratory
19. WG Zumft 1997 Cell biology and molecular basis of denitrification Microbiol Mol Biol Rev 61 533 616