Molecular phylogeny of the blind cavefish Phreatichthys andruzzii and Garra barreimiae within the family Cyprinidae

Environmental Biology of Fishes

Volumn 84, Issue 1, 2009, Pages 95-107

  Colli, Licia ^a,c   Paglianti, Annalisa ^b   Berti, Roberto ^b   Gandolfi, Gilberto ^a   Tagliavini, James ^a  

^a UNIVERSITY OF PARMA   (Italy)

^b UNIVERSITY OF FLORENCE   (Italy)

^c UNIVERSITÀ CATTOLICA DEL SACRO CUORE   (Italy)

Author keywords

Cyprinids; Cytochrome b; Garra barreimiae; Phreatichthys andruzzii; Troglomorphic fish

Indexed keywords

CYPRINID; GENETIC ANALYSIS; IMMIGRATION; MIOCENE; MITOCHONDRIAL DNA; PHYLOGENY; PLEISTOCENE; PLIOCENE; TAXONOMY;

AFRICA; ASIA; EAST AFRICA; EURASIA; MIDDLE EAST; OMAN; SOMALIA; SUB-SAHARAN AFRICA;

AMBLYOPSIDAE; ASTYANAX FASCIATUS MEXICANUS; CYPRINIDAE; CYPRINIFORMES; GARRA; GARRA BARREIMIAE; PHREATICHTHYS ANDRUZZII;

EID: 58149172061     PISSN: 03781909     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10641-008-9393-z     Document Type: Article

References (54)

1. KE Banister 1984 A subterranean population of Garra barreimiae (Teleostei: Cyprinidae) from Oman, with comments on the concept of regressive evolution J Nat Hist 18 927 938
2. KE Banister MK Bunni 1980 A new blind cyprinid fish from Iraq Bull Br Mus Nat Hist Zool 38 3 151 158
3. JC Briggs 1979 Ostariophysan zoogeography: an alternative hypothesis Copeia 1 111 118
4. MA Cane P Molnar 2001 Closing of the Indonesian seaway as a precursor to east African aridification around 3-4 million years ago Nature 411 157 162
5. Cavender GJ (1991) The fossil record of the cyprinidae. In: Winfield IJ, Nelson JS (eds) Cyprinid fishes - systematics, biology and exploitation. Chapman & Hall, London, pp 34-54
6. MC Christman DC Culver 2001 The relationship between cave biodiversity and available habitat J Biogeogr 28 367 380
7. M Cobolli-Sbordoni E De Matthaeis M Mattoccia 1996 Genetic variability and differentiation of hypogean Cyprinid fishes from Somalia J Zoolog Syst Evol Res 34 75 84
8. DC Culver TC Kane R Fong 1990 Morphology of cave organisms - it is adaptive Mem Biospeol 17 13 26
9. PB deMenocal 1995 Plio-Pleistocene African climate Science 270 5233 53 53
10. PB deMenocal 2004 African climate change and faunal evolution during the Pliocene-Pleistocene Earth Planet Sci Lett 220 3 24
11. Drummond AJ, Rambaut A (2007) BEAST: Bayesian Evolutionary Analysis Sampling Trees. Version 1.4.1. http://evolve.zoo.ox.ac.uk/beast/
12. JD Durand CS Tsigenopoulos E Ünlü 2002 Phylogeny and biogeography of the family cyprinidae in the Middle-East inferred from cytochrome b DNA - evolutionary significance of this region Mol Phylogenet Evol 22 1 91 100
13. A Ercolini R Berti 1975 Light sensitivity experiments and morphology studies of the blind phreatic fish Phreatichthys andruzzii Vinciguerra from Somalia Monit Zool Ital 6 Suppl 29 43
14. A Ercolini R Berti L Chelazzi 1982 Researches on the phreatobic fishes of Somalia: achievements and prospects Monit Zool Ital (N.S.) 17 Suppl 219 241
15. A Ercolini R Berti L Chelazzi 1987 Oxygen consumption in hypogean and epigean cyprinids (Pisces) Monit Zool Ital (N.S.) 22 Suppl 23 30
16. Felsenstein J (2002) PHYLIP 3.6 (Phylogeny Inference Package) version 3.6a3. Dept. of Genome Science, Univ. of Washington, Seattle, WA. http://evolution.gs.washington.edu/phylip.html
17. GR Feulner 1998 Wadi fish of the UAE Tribulus 8 2 16 22
18. FishBase (2006) World Wide Web electronic publication. Froese R, Pauly D (eds) http://www.fishbase.org. Cited 22 Feb 2007
19. HW Fowler H Steinitz 1956 Fishes from Cyprus, Iran, Iraq, Israel and Oman Bull Res Counc Isr 5B 260 292
20. PH Greenwood 1973 Fish fossils of the late Miocene of Tunisia Notes Serv Géol Tunisie 37 41 72
21. S Guindon O Gascuel 2003 A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood Syst Biol 52 5 696 704
22. M Hernández Fernández ES Vrba 2005 Plio-Pleistocene climatic change in the Turkana Basin (East Africa): evidence from large mammal faunas J Hum Evol 50 595 626
23. JP Huelsenbeck FR Ronquist 2001 MRBAYES: Bayesian inference of phylogeny Bioinformatics 17 754 755
24. WR Jeffery 2001 Cavefish as a model system in evolutionary developmental biology Dev Biol 231 1 12
25. M Kimura 1980 A simple method foe estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences J Mol Evol 16 111 120
26. TD Kocher WK Thomas A Meyer 1989 Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers Proc Natl Acad Sci USA 86 6196 6200
27. P Kotlík P Berrebi 2001 Phylogeography of the barbel (Barbus barbus) assessed by mitochondrial DNA variation Mol Ecol 10 2177 2185
28. JB Kruskal 1964 Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesys Psychometrika 29 1 27
29. S Kumar K Tamura M Nei 2004 MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinf 5 150 163
30. NE Levin J Quade SW Simpson 2004 Isotopic evidence for Plio-Pleistocene environmental change at Gona, Ethiopia Earth Planet Sci Lett 219 93 110
31. Mayr E (1969) Principles of systematic zoology. McGraw-Hill, New York
32. O Otero 2001 The oldest-known cyprinid fish of the Afro-Arabic plate, and its paleobiogeographical implications J Vertebr Paleontol 21 2 386 388
33. O Otero M Gayet 2001 Palaeoichthyofaunas from the Lower Oligocene and Miocene of the Arabian Plate: palaeoecological and palaeobiogeografical implications Palaeogeogr Palaeoclimatol Palaeoecol 165 141 169
34. S Pääbo WK Thomas KM Whitfield 1991 Rearrangements of mitochondrial transfer RNA genes in marsupials J Mol Evol 33 426 430
35. J Pellegrin 1932 Les Cyprinidés cavernicole d'Afrique Archo Zool Ital 16 622 629
36. D Posada KA Crandall 1998 Modeltest: testing the model of DNA substitution Bioinformatics 14 817 818
37. GS Proudlove 2001 The conservation status of hypogean fishes Environ Biol Fish 62 201 213
38. Rambaut A, Drummond AJ (2005) Tracer v 1.3. http://evolve.zoo.ox.ac.uk/ software/tracer
39. J Reynolds BS Weir CC Cockerham 1983 Estimation for the coancestry coefficient: basis for a short-term genetic distance Genetics 105 767 779
40. A Romero 2001 Scientists prefer them blind: the history of hypogean fishes research Environ Biol Fish 62 43 71
41. A Romero KM Paulson 2001 It's a wonderful hypogean life: a guide to the troglomorphic fishes of the world Environ Biol Fish 62 13 41
42. OI Sanjur JA Carmona I Doadrio 2003 Evolutionary and biogeographical patterns within Iberian populations of the genus Squalius inferred from molecular data Mol Phylogenet Evol 29 20 30
43. Schneider S, Roessli D, Excoffier L (2000) Arlequin ver 2.000: A software for population genetics analysis. Dept. of Anthropology and Ecology, University of Geneva, Switzerland. http://lgb.unige.ch/arlequin/software
44. StatSoft Inc. (2004) Statistica (data analysis software system), Version 7. www.statsoft.com
45. U Strecker L Bernatchez H Wilkens 2003 Genetic divergence between cave and surface populations of Astyanax in Mexico (Characidae, Teleostei) Mol Ecol 12 699 710
46. Swofford DL (2003) PAUP*: Phylogenetic analysis using parsimony (*and Other Methods). Version 4.0b10. Sinauer Associates, Sunderland, Massachusetts
47. Thinès G (1969) L'évolution régressive des poissons cavernicoles et abissaux. Masson and Cie (eds), Paris, p 394
48. JD Thompson TJ Gibson F Plewniak 1997 The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 24 4876 4882
49. M Timmermann I Schlupp M Plath 2004 Shoaling behaviour in a surface-dwelling and a cave-dwelling population of a barb Garra barreimiae (Cyprinidae, Teleostei) Acta Ethol 7 59 64
50. E Trajano 2001 Ecology of subterranean fishes: an overview Environ Biol Fish 62 133 160
51. JAH Van Couvering 1977 Early records of freshwater fishes in Africa Copeia 1977 1 163 166
52. D Vinciguerra 1924 Descrizione di un ciprinide cieco proveniente dalla Somalia italiana Annali Mus civ Stor nat Giacomo Doria 51 239 243
53. K Yemane R Bonnefille H Faure 1985 Palaeoclimatic and tectonic implications of Neogene microflora from the Northwestern Ethiopian highlands Nature 318 653 656
54. R Zardoia I Doadrio 1999 Molecular evidence on the evolutionary and biogeographical patterns of European Cyprinids J Mol Evol 49 227 237