A dormancy state in nonspore-forming bacteria

Applied Microbiology and Biotechnology

Volumn 81, Issue 5, 2009, Pages 927-941

  Sachidanandham, Ramaiah ^a   Yew Hoong Gin, Karina ^a  

^a NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

Author keywords

Adaptation; Dormancy; E. coli; Enterobacter; Flow cytometry; Fluorescence activated cell sorting (FACS); Klebsiella; Nonspore forming bacteria; Stress; Viable but nonculturable (VBNC)

Indexed keywords

ADAPTATION; DORMANCY; E. COLI; ENTEROBACTER; KLEBSIELLA; NONSPORE-FORMING BACTERIA; VIABLE BUT NONCULTURABLE (VBNC);

CELL DEATH; COMPUTER KEYBOARDS; ESCHERICHIA COLI; FLOW CYTOMETRY; FLUORESCENCE; FORMING; NUTRIENTS; RESUSCITATION;

BACTERIOLOGY;

BACTERIUM; DORMANCY; ENVIRONMENTAL STRESS; FLOW CYTOMETRY; OSMOSIS; SURVIVAL;

ADAPTATION, PHYSIOLOGICAL; COLONY COUNT, MICROBIAL; ENTEROBACTER; ESCHERICHIA COLI; KLEBSIELLA PNEUMONIAE; MICROBIAL VIABILITY; OSMOTIC PRESSURE;

BACTERIA (MICROORGANISMS); ENTEROBACTER; ENTEROBACTER SP.; ESCHERICHIA COLI; KLEBSIELLA; KLEBSIELLA PNEUMONIAE;

EID: 58149153117     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-008-1712-y     Document Type: Article

References (55)

1. A Aertsen CW Michiels 2005 Diversify or die: generation of diversity in response to stress Crit Rev Microbiol 31 2 69 78
2. I Arana M Orruño D Pérez-Pascual C Seco A Muela I Barcina 2007 Inability of Escherichia coli to resuscitate from the viable but nonculturable state FEMS Microbiol Ecol 62 1 1 11
3. SV Avery 2006 Microbial cell individuality and the underlying sources of heterogeneity Nat Rev Microbiol 4 577 587
4. Bailey JE, Ollis DF (1986) Biochemical engineering fundamentals, 2nd edn. McGraw-Hill, New York
5. I Bjedov O Tenaillon B Gérard V Souza E Denamur M Radman F Taddei I Matic 2003 Stress-induced mutagenesis in bacteria Science 300 5624 1404 1409
6. IR Booth 2002 Stress and the single cell: intrapopulation diversity is a mechanism to ensure survival upon exposure to stress Int J Food Microbiol 78 1-2 19 30
7. PF Chan SJ Foster E Ingham MO Clements 1998 The Staphylococcus aureus alternative sigma factor sigmaB controls the environmental stress response but not starvation survival or pathogenicity in a mouse abscess model J Bacteriol 180 23 6082 6089
8. A Colman-Lerner A Gordon E Serra T Chin O Resnekov D Endy CG Pesce R Brent 2005 Regulated cell-to-cell variation in a cell-fate decision system Nature 437 699 706
9. F Coutard P Crassous M Droguet E Gobin RR Colwell M Pommepuy D Hervio-Heath 2007 Recovery in culture of viable but nonculturable Vibrio parahaemolyticus: regrowth or resuscitation? ISME J 1 111 120
10. C Cuny L Maïalène S Dukan 2007 Induction of a global stress response during the first step of Escherichia coli plate growth Appl Environ Microbiol 73 3 885 889
11. HM Davey DB Kell 1996 Flow cytometry and cell sorting of heterogeneous microbial populations: the importance of single-cell analyses Microbiol Rev 60 4 641 696
12. B Desnues C Cuny G Grégori S Dukan H Aguilaniu T Nyström 2003 Differential oxidative damage and expression of stress defence regulons in culturable and non-culturable Escherichia coli cells EMBO Rep 4 4 400 404
13. M Du J Chen X Zhang A Li Y Li 2007 Characterization and resuscitation of viable but nonculturable Vibrio alginolyticus VIB283 Arch Microbiol 188 3 283 288
14. MB Elowitz AJ Levine ED Siggia PS Swain 2002 Stochastic gene expression in a single cell Science 297 1183 1186
15. SE Finkel 2006 Long-term survival during stationary phase: evolution and the GASP phenotype Nat Rev Microbiol 4 2 113 120
16. HB Fraser AE Hirsh G Giaever J Kumm MB Eisen 2004 Noise minimization in eukaryotic gene expression PLoS Biol 2 834 838
17. D Frenkiel-Krispin S Levin-Zaidman E Shimoni SG Wolf EJ Wachtel T Arad SF Finkel R Kolter A Minsky 2001 Regulated phase transitions of bacterial chromatin: a non-enzymatic pathway for generic DNA protection EMBO J 20 1184 1191
18. BZ Haznedaroglua CH Bolsterb SL Walkera 2008 The role of starvation on Escherichia coli adhesion and transport in saturated porous media Water Res 42 6-7 1547 1554
19. S Heim MDM Lleo B Bonato CA Guzman P Canepari 2002 The viable but nonculturable state and starvation are different stress responses of Enterococcus faecalis, as determined by proteome analysis J Bacteriol 184 23 6739 6745
20. EC Hett MC Chao AJ Steyn SM Fortune LL Deng EJ Rubin 2007 A partner for the resuscitation-promoting factors of Mycobacterium tuberculosis Molecular Microbiol 66 3 658 668
21. NH Keep JM Wardb M Cohen-Gonsaudc B Henderson 2006 Wake up! Peptidoglycan lysis and bacterial non-growth states Trends Microbiol 14 6 271 276
22. DB Kell AS Kaprelyants DH Weichart CR Harwood MR Barer 1998 Viability and activity in readily culturable bacteria: a review and discussion of the practical issues Antonie van Leeuwenhoek 73 2 169 187
23. D Kültz 2005 Molecular and evolutionary basis of the cellular stress response Ann Rev Physiol 67 225 257
24. E Kussell S Leibler 2005 Phenotypic diversity, population growth, and information in fluctuating environments Science 309 2075 2078
25. Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, Chichester, UK, pp 115-175
26. SV MacMillan DA Alexander DE Culham HJ Kunte EV Marshall D Rochon JM Wood 1999 The ion coupling and organic substrate specificities of osmoregulatory transporter ProP in Escherichia coli Biochim Biophys Acta 1420 30 44
27. D McDougald SA Rice D Weichart S Kjelleberg 1998 Nonculturability: adaptation or debilitation? FEMS Microbiol Ecol 25 1 1 9
28. A Muela C Seco E Camafeita I Arana M Orrun JA Lopez I Barcina 2008 Changes in Escherichia coli outermembrane subproteome under environmental conditions inducing the viable but nonculturable state FEMS Microbiol Ecol 64 28 36
29. GV Mukamolova AS Kaprelyants DI Young M Young DB Kell 1998 A bacterial cytokine Proc Natl Acad Sci USA 95 15 8916 8921
30. GV Mukamolova SS Kormer DB Kell AS Kaprelyants 1999 Stimulation of the multiplication of Micrococcus luteus by an autocrine growth factor Arch Microbiol 172 9 14
31. GV Mukamolova AS Kaprelyants DB Kell M Young 2003 Adoption of the transiently non-culturable state-a bacterial survival strategy? Adv Microb Physiol 47 65 129
32. T Nystrom 2003 Nonculturable bacteria: programmed survival forms or cells at death's door? Bioessays 25 3 204 211
33. RL Ohniwa K Morikawa J Kim T Ohta A Ishihama C Wada K Takeyasu 2006 Dynamic state of DNA topology is essential for genome condensation in bacteria EMBO J 25 23 5591 5602
34. GF Parker RA Daniel J Errington 1996 Timing and genetic regulation of commitment to sporulation in Bacillus subtilis Microbiology 142 3445 3452
35. Pirt SJ (1975) Principles of microbe and cell cultivation. Blackwell, Oxford
36. F Portaels WM Meyers A Ablordey AG Castro K Chemlal 2008 First cultivation and characterization of Mycobacterium ulcerans from the environment PLoS Neg Trop Dis 2 3 e178
37. KI Racher RT Voegele EV Marshall DE Culham JM Wood H Jung 1999 Purification and reconstitution of an osmosensor: transporter ProP of Escherichia coli senses and responds to osmotic shifts Biochemistry 38 1676 1684
38. BR Robertson DK Button 1989 Characterizing aquatic bacteria according to population, cell size, and apparent DNA content by flow cytometry Cytometry 10 70 76
39. T Romantsov S Helbig DE Culham C Gill L Stalker JM Wood 2007 Cardiolipin promotes polar localization of osmosensory transporter ProP in Escherichia coli Mol Microbial 64 6 1455 1465
40. N Rosenfeld JW Young U Alon PS Swain MB Elowitz 2005 Gene regulation at the single-cell level Science 307 1962 1965
41. DB Roszak RR Colwell 1987 Survival strategies of bacteria in the natural environment Microbiol Rev 51 3 365 379
42. WG Roth MP Leckie DN Dietzler 1998 Restoration of colony-forming activity in osmotically stressed Escherichia coli by betaine Appl Environ Microbiol 54 12 3142 3146
43. R Sachidanandham KYH Gin CL Poh 2005 Monitoring of active but non-culturable bacterial cells by flow cytometry Biotechnol Bioeng 89 1 24 31
44. Shapiro HM (2003) Practical flow cytometry, 4th edn. Wiley, Hoboken, NJ
45. GEC Sheridan CI Masters JA Shallcross BM Mackey 1998 Detection of mRNA by reverse transcription-PCR as an indicator of viability in Escherichia coli cells Appl Environ Microbiol 64 4 1313 1318
46. C Signoretto MM Lleò CM Tafi P Canepari 2003 Cell wall chemical composition of Enterococcus faecalis in the viable but nonculturable state Appl Environ Microbiol 66 5 1953 1959
47. WK Smits OP Kuipers J Veening 2006 Phenotypic variation in bacteria: the role of feedback regulation Nat Rev Microbiol 4 259 271
48. NR Stokes HD Murray C Subramaniam RL Gourse P Louis W Bartlett S Miller IR Booth 2003 A role for mechanosensitive channels in survival of stationary phase: regulation of channel expression by RpoS Proc Natl Acad Sci USA 100 26 15959 15964
49. ER Sumner SV Avery 2002 Phenotypic heterogeneity: differential stress resistance among individual cells of the yeast Saccharomyces cerevisiae Microbiology 148 345 351
50. M Thattai A van-Oudenaarden 2004 Stochastic gene expression in fluctuating environments Genetics 167 523 530
51. JT Trevors 2003 Fluorescent probes for bacterial cytoplasmic membrane research J Biochem Biophys Methods 57 87 103
52. HL True SLA Lindquist 2000 Yeast prion provides a mechanism for genetic variation and phenotypic diversity Nature 407 477 483
53. SG Wolf D Frenkiel T Arad SE Finkel R Kolter A Minsky 1999 DNA protection by stress-induced biocrystailization Nature 400 83 85
54. JM Wood 1999 Osmosensing by bacteria: signals and membrane-based sensors Microbiol Mol Biol Rev 63 230 262
55. JM Wood 2006 Osmosensing by bacteria Sci STKE 357 pe43