Defining the ancestral eutherian karyotype: A cladistic interpretation of chromosome painting and genome sequence assembly data

Chromosome Research

Volumn 16, Issue 8, 2008, Pages 1133-1141

  Robinson, Terence J ^a   Ruiz Herrera, Aurora ^b  

^a STELLENBOSCH UNIVERSITY   (South Africa)

^b UNIVERSITY OF PAVIA   (Italy)

Author keywords

Ancestral karyotypes; Cladistics; Symplesiomorphies; Synapomorphies

Indexed keywords

ARTICLE; CHICKEN; CHROMOSOME; CHROMOSOME 1; CHROMOSOME 10P; CHROMOSOME 10Q; CHROMOSOME 11; CHROMOSOME 13; CHROMOSOME 14; CHROMOSOME 15; CHROMOSOME 16P; CHROMOSOME 16Q; CHROMOSOME 17; CHROMOSOME 18; CHROMOSOME 19P; CHROMOSOME 19Q; CHROMOSOME 20; CHROMOSOME 21; CHROMOSOME 22Q; CHROMOSOME 2P; CHROMOSOME 3P; CHROMOSOME 4Q; CHROMOSOME 5; CHROMOSOME 6; CHROMOSOME 8P; CHROMOSOME 8Q; CHROMOSOME 9; CHROMOSOME PAINTING; CHROMOSOME PAIRING; CLADISTICS; GENE SEQUENCE; HUMAN; KARYOTYPE; MONOPHYLY; NONHUMAN; OPOSSUM; PRIORITY JOURNAL; PUFFER FISH; X CHROMOSOME; ZEBRA FISH;

ANIMALS; CHROMOSOME PAINTING; CHROMOSOMES, MAMMALIAN; EVOLUTION, MOLECULAR; KARYOTYPING; MAMMALS; PHYLOGENY; SPECIES SPECIFICITY; SYNTENY;

DANIO RERIO; DIDELPHIDAE; EUTHERIA; TETRAODONTIDAE; VERTEBRATA;

EID: 58149152860     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-008-1264-0     Document Type: Article

References (40)

1. G Balmus VA Trifonov LS Biltueva 2007 Cross-species chromosome painting among camel, cattle pig and human: further insights into the putative Cetartiodactyla ancestral karyotype Chromosome Res 15 499 514
2. MJ Chaisson BJ Raphael PA Pevner 2006 Microinversions in mammalian evolution Proc Natl Acad Sci U S A 103 19824 19829
3. BP Chowdhary T Raudsepp L Froenicke 1998 Emerging patterns of comparative genome organization in some mammalian species as revealed by Zoo-FISH Genome Res 8 577 589
4. MA Ferguson-Smith V Trifonov 2007 Mammalian karyotype evolution Nat Rev Genet 8 950 962
5. F Froenicke J Müller-Navia K Romanakis H Scherthan 1997 Chromosomal homeologies between human, harbor seal (Phoca vitulina) and the putative ancestral carnivore karyotype revealed by Zoo-FISH Chromosoma 106 108 113
6. L Froenicke 2005 Origins of primate chromosomes-as delineated by Zoo-FISH and alignments of human and mouse draft genome sequences Cytogenet Genome Res 108 122 138
7. L Froenicke MG Caldès A Graphodatsky 2006 Are molecular cytogenetics and bioinformatics suggesting diverging models of ancestral mammalian genomes? Genome Res 16 306 310
8. R Glas JA Marshall Graves R Toder 1999 Cross-species chromosome painting between human and marsupial directly demonstrates the ancient region of the mammalian X Mamm Genome 10 1115 1116
9. AS Graphodatsky F Yang PL Perelman 2002 Comparative molecular cytogenetic studies in the Order Carnivora: mapping chromosomal rearrangements onto the phylogenetic tree Cytogenet Genome Res 96 137 145
10. AS Graphodatsky F Yang G Dobigny 2008 Tracking the evolution of genome organization in rodents by ZOO-FISH Chromosome Res 16 261 274
11. Hennig W (1950) Grundzüge einer Theorie der Phylogenetischen Systematik. Deutscher Zentralverlag, Berlin. [Published in English translation in Phylogenetic Systematics, University of Illinois Press, Urbana, IL, 1966.]
12. JW Ijdo A Baldini DC Ward 1991 Origin of human chromosome 2: an ancestral telomere-telomere fusion Proc Natl Acad Sci U S A 88 9051 9055
13. H Kehrer-Sawatzki DN Cooper 2008 Molecular mechanisms of chromosomal rearrangement during primate evolution Chromosome Res 16 41 56
14. M Kohn J Hogel W Vogel 2006 Reconstruction of a 450-My-old ancestral vertebrate protokaryotype Trends Genet 22 203 210
15. S Müller R Stanyon PCM O'Brien 1999 Defining the ancestral karyotype of all primates by multidirectional chromosome painting between tree shrews, lemurs and humans Chromosoma 108 393 400
16. S Müller R Stanyon P Finelli 2000 Molecular dissection of human chromosome 3 and 21 evolution Proc Natl Acad Sci U S A 97 206 211
17. WJ Murphy E Eizirik SJ O'Brien 2001 Resolution of the early placental mammal radiation using Bayesian phylogenetics Science 294 2348 2351
18. WJ Murphy DM Larkin A Everts-van-der Wind 2005 Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps Science 309 613 617
19. WJ Murphy TH Pringle TA Crider 2007 Using genomic data to unravel the root of the placental mammal phylogeny Genome Res 17 413 421
20. Y Nakatani H Takeda Y Kohara 2007 Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates Genome Res 17 1254 1265
21. WG Nash J Wienberg MA Ferguson-Smith 1998 Comparative genomics: tracking chromosome evolution in the family Ursidae using reciprocal chromosome painting Cytogenet Cell Genet 83 182 192
22. K Naruse M Tanaka K Mita 2004 A medaka gene map: the trace of ancestral vertebrate proto-chromosomes revealed by comparative gene mapping Genome Res 14 820 828
23. Ohno S (1967) Sex Chromosomes and Sex Linked Genes. New York: Springer.
24. PA Pevzner G Tesler 2003 Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution Proc Natl Acad Sci U S A 100 7672 7677
25. JH Postlethwait IG Woods P Ngo-Hazelett 2000 Zebrafish comparative genomics and the origins of vertebrate chromosomes Genome Res 10 1890 1902
26. W Rens PCM O'Brien F Yang 2001 Karyotype relationships between distantly related marsupials from South America and Australia Chromosome Res 9 301 308
27. F Richard M Lombard B Dutrillaux 2003 Reconstruction of the ancestral karyotype of eutherian mammals Chromosome Res 11 605 618
28. TJ Robinson A Ruiz-Herrera L Froenicke 2006 Dissecting the mammalian genome-new insights into chromosomal evolution Trends Genet 22 297 301
29. A Ruiz-Herrera F García L Mora 2005 Evolutionary conserved chromosomal segments in the human karyotype are bounded by unstable chromosome bands Cytogenet Genome Res 108 161 174
30. A Ruiz-Herrera J Castresana TJ Robinson 2006 Is mammalian chromosomal evolution driven by regions of genome fragility? Genome Biol 7 R115
31. A Ruiz-Herrera TJ Robinson 2007 Chromosomal instability in Afrotheria: fragile sites, evolutionary breakpoints and phylogenetic inference from genome sequence assemblies BMC Evol Biol 7 199
32. R Stanyon M Rocchi R Capozzi 2008 Primate chromosome evolution: Ancestral karyotypes, marker order and neocentromeres Chromosome Res 16 17 39
33. M Svartman G Stone JE Page 2004 A chromosome painting test of the basal eutherian karyotype Chromosome Res 12 45 53
34. VA Trifonov R Stanyon AI Nesterenko 2008 Multidirectional cross-species painting illuminates the history of karyotypic evolution in Perissodactyla Chromosome Res 16 89 107
35. PJ Waddell H Kishino R Ota 2001 A phylogenetic foundation for comparative mammalian genomics Genome Inform 12 141 154
36. PD Waters MC Wallis JA Marshall Graves 2007 Mammalian sex-origin and evolution of the Y chromosome and SRY Semin Cell Dev Biol 18 389 400
37. J Wienberg 2004 The evolution of eutherian chromosomes Curr Opin Genet Dev 14 657 666
38. IG Woods C Wilson B Friedlander 2005 The zebrafish gene map defines ancestral vertebrate chromosomes Genome Res 15 1307 1314
39. F Yang EZ Alkalaeva PL Perelman 2003 Reciprocal chromosome painting among human, aardvark, and elephant (superorder Afrotheria) reveals the likely eutherian ancestral karyotype Proc Natl Acad Sci USA 100 1062 1066
40. S Zhao J Shetty L Hou 2004 Human, mouse, and rat genome large-scale rearrangements: stability versus speciation Genome Res 14 1851 1860