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Volumn 56, Issue 1-2, 2008, Pages 75-82

Amplified rDNA Restriction Analysis (ARDRA) for monitoring of potentially toxic cyanobacteria in water samples

Author keywords

Aphanizomenon; ARDRA; Microcystis; Monitoring; rRNA; Toxic cyanobacteria

Indexed keywords

ALGAL BLOOM; CYANOBACTERIUM; IDENTIFICATION METHOD; POLLUTION MONITORING; TOXIC ORGANISM; TOXIN;

EID: 58149144430     PISSN: 07929978     EISSN: None     Source Type: Journal    
DOI: 10.1560/IJPS.56.1-2.75     Document Type: Article
Times cited : (4)

References (35)
  • 2
    • 0030869941 scopus 로고    scopus 로고
    • Identification of cylindrospermopsin in Aphanizomenon ovalisporum (Cyanophyceae) isolated from Lake Kinneret, Israel
    • Banker, R., Carmeli, S., Hadas, O., Teltsch, B., Porat, R. Sukenik, A. 1997. Identification of cylindrospermopsin in Aphanizomenon ovalisporum (Cyanophyceae) isolated from Lake Kinneret, Israel. J. Phycol. 33: 613-616.
    • (1997) J. Phycol , vol.33 , pp. 613-616
    • Banker, R.1    Carmeli, S.2    Hadas, O.3    Teltsch, B.4    Porat, R.5    Sukenik, A.6
  • 3
    • 0036946724 scopus 로고    scopus 로고
    • Monitoring changing toxigenicity of a cyanobacterial bloom by molecular methods
    • Baker, J.A., Entsch, B., Neilan, B.A., McKay D.B. 2002. Monitoring changing toxigenicity of a cyanobacterial bloom by molecular methods. Appl. Environ. Microbiol. 68: 6070-6076.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 6070-6076
    • Baker, J.A.1    Entsch, B.2    Neilan, B.A.3    McKay, D.B.4
  • 4
    • 0036926698 scopus 로고    scopus 로고
    • Phylogeny and genetic variance in terrestrial Microcoleus (Cyanophyceae) species based on sequence analysis of the 16S rRNA gene and associated 16S-23S ITS region
    • Boyer, S.L., Johansen, J.R., Flechtner V.R., Howard, G. 2002. Phylogeny and genetic variance in terrestrial Microcoleus (Cyanophyceae) species based on sequence analysis of the 16S rRNA gene and associated 16S-23S ITS region. J. Phycol. 38: 1222-1235.
    • (2002) J. Phycol , vol.38 , pp. 1222-1235
    • Boyer, S.L.1    Johansen, J.R.2    Flechtner, V.R.3    Howard, G.4
  • 7
    • 0037226538 scopus 로고    scopus 로고
    • Microcystin biosynthesis in Planktothrix: Genes, evolution, and manipulation
    • Christiansen, G., Fastner, J., Erhard, M., Börner, T., Dittmann, E. 2003. Microcystin biosynthesis in Planktothrix: genes, evolution, and manipulation. J. Bacteriol. 185: 564-572.
    • (2003) J. Bacteriol , vol.185 , pp. 564-572
    • Christiansen, G.1    Fastner, J.2    Erhard, M.3    Börner, T.4    Dittmann, E.5
  • 8
    • 14644427810 scopus 로고    scopus 로고
    • Genetic contributions to the risk assessment of microcystin in the environment
    • Dittmann, E., Börner, T. 2005. Genetic contributions to the risk assessment of microcystin in the environment. Toxicol. Appl. Pharm. 203: 192-200.
    • (2005) Toxicol. Appl. Pharm , vol.203 , pp. 192-200
    • Dittmann, E.1    Börner, T.2
  • 9
    • 33749267987 scopus 로고    scopus 로고
    • Highly sensitive real-time PCR assay for quantification of toxic cyanobacteria based on microcystin synthetase A gene
    • Furukawa, K., Noda, N., Tsuneda, S., Saito, T., Itayama, T., Inamori, Y. 2006. Highly sensitive real-time PCR assay for quantification of toxic cyanobacteria based on microcystin synthetase A gene. J. Biosci. Bioeng. 102: 90-96.
    • (2006) J. Biosci. Bioeng , vol.102 , pp. 90-96
    • Furukawa, K.1    Noda, N.2    Tsuneda, S.3    Saito, T.4    Itayama, T.5    Inamori, Y.6
  • 10
    • 0036098748 scopus 로고    scopus 로고
    • Physiological variables determined under laboratory conditions may explain the bloom of Aphanizomenon ovalisporum in Lake Kinneret
    • Hadas, O., Pinkas, R., Malinsky-Rushansky, N., Shalev-Alon, G., Delphine, E., Berner, T., Sukenik, A., Kaplan, A. 2002. Physiological variables determined under laboratory conditions may explain the bloom of Aphanizomenon ovalisporum in Lake Kinneret. Eur. J. Phycol. 37: 259-267.
    • (2002) Eur. J. Phycol , vol.37 , pp. 259-267
    • Hadas, O.1    Pinkas, R.2    Malinsky-Rushansky, N.3    Shalev-Alon, G.4    Delphine, E.5    Berner, T.6    Sukenik, A.7    Kaplan, A.8
  • 11
    • 0032312798 scopus 로고    scopus 로고
    • Lakes Hula and Agmon: Destruction and creation of wetland ecosystems in northern Israel
    • Hambright, K.D., Zohary, T. 1998. Lakes Hula and Agmon: destruction and creation of wetland ecosystems in northern Israel. Wetlands Ecol. Manage. 6: 83-89.
    • (1998) Wetlands Ecol. Manage , vol.6 , pp. 83-89
    • Hambright, K.D.1    Zohary, T.2
  • 12
    • 0030220506 scopus 로고    scopus 로고
    • Applicability of combined amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy
    • Heyndrickx, M., Vauterin, L., Vandamme, P., Kersters, K., DeVos, P. 1996. Applicability of combined amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy. J. Microbiol. Meth. 26: 247-259.
    • (1996) J. Microbiol. Meth , vol.26 , pp. 247-259
    • Heyndrickx, M.1    Vauterin, L.2    Vandamme, P.3    Kersters, K.4    DeVos, P.5
  • 13
    • 0347117582 scopus 로고    scopus 로고
    • PCR-based identification of microcystin-producing genotypes of different cyanobacterial genera
    • Hisbergues, M., Christiansen, G., Rouhiainen, L., Sivonen, K., Börner, T. 2003. PCR-based identification of microcystin-producing genotypes of different cyanobacterial genera. Arch. Microbiol. 180: 402-410.
    • (2003) Arch. Microbiol , vol.180 , pp. 402-410
    • Hisbergues, M.1    Christiansen, G.2    Rouhiainen, L.3    Sivonen, K.4    Börner, T.5
  • 14
    • 0242405735 scopus 로고    scopus 로고
    • High-resolution differentiation of cyanobacteria by using rRNA-internal transcribed spacer denaturing gradient gel electrophoresis
    • Janse, I., Meima, M., Kardinaal, W.E.A., Zwart, G. 2003. High-resolution differentiation of cyanobacteria by using rRNA-internal transcribed spacer denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 69: 6634-6643.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 6634-6643
    • Janse, I.1    Meima, M.2    Kardinaal, W.E.A.3    Zwart, G.4
  • 16
    • 33646596534 scopus 로고    scopus 로고
    • Determination of cyanobacterial diversity during algal blooms in Daechung reservoir, Korea, on the basis of cpcBA intergenic spacer region analysis
    • Kim, S.G., Rhee, S.K., Ahn, C.Y., Ko, S.R., Choi, G.G., Bae, J.W., Park, Y.H., Oh, H.M. 2006. Determination of cyanobacterial diversity during algal blooms in Daechung reservoir, Korea, on the basis of cpcBA intergenic spacer region analysis. Appl. Environ. Microbiol. 72: 3252-3258.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 3252-3258
    • Kim, S.G.1    Rhee, S.K.2    Ahn, C.Y.3    Ko, S.R.4    Choi, G.G.5    Bae, J.W.6    Park, Y.H.7    Oh, H.M.8
  • 17
    • 16544385301 scopus 로고    scopus 로고
    • Identification of the bacterial community of maple sap by using amplified ribosomal DNA (rDNA) restriction analysis and rDNA sequencing
    • Lagacé, L., Pitre, M., Jacques, M., Roy, D. 2004. Identification of the bacterial community of maple sap by using amplified ribosomal DNA (rDNA) restriction analysis and rDNA sequencing. Appl. Environ. Microbiol. 70: 2052-2060.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 2052-2060
    • Lagacé, L.1    Pitre, M.2    Jacques, M.3    Roy, D.4
  • 18
    • 0242573212 scopus 로고    scopus 로고
    • Detection and identification of Lactobacillus species in crops of broilers of different ages by using PCR-Denaturing gradient gel electrophoresis and amplified ribosomal DNA restriction analysis
    • Le Luo, G., Hagen, K.E., Tannock, G.W., Korver, D.R., Fasenko, G.M., Allison, G.E. 2003. Detection and identification of Lactobacillus species in crops of broilers of different ages by using PCR-Denaturing gradient gel electrophoresis and amplified ribosomal DNA restriction analysis. Appl. Environ. Microbiol. 69: 6750-6757.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 6750-6757
    • Le Luo, G.1    Hagen, K.E.2    Tannock, G.W.3    Korver, D.R.4    Fasenko, G.M.5    Allison, G.E.6
  • 19
    • 0030762719 scopus 로고    scopus 로고
    • Identification of cyanobacteria by polymorphisms of PCR-amplified ribosomal DNA spacer region
    • Lu, W.Q., Evans, E.H., Mc Coll, S.M., Saunders, V.A. 1997. Identification of cyanobacteria by polymorphisms of PCR-amplified ribosomal DNA spacer region. FEMS Microbiol. Lett. 153:141-149.
    • (1997) FEMS Microbiol. Lett , vol.153 , pp. 141-149
    • Lu, W.Q.1    Evans, E.H.2    Mc Coll, S.M.3    Saunders, V.A.4
  • 20
    • 17244367035 scopus 로고    scopus 로고
    • Variability of the microcystin synthetase gene cluster in the genus Planktothrix (Oscillatoriales, Cyanobacteria)
    • Mbedi, S., Welker, M., Fastner, J., Wiedner, C. 2005. Variability of the microcystin synthetase gene cluster in the genus Planktothrix (Oscillatoriales, Cyanobacteria). FEMS Microbiol. Lett. 245: 299-306.
    • (2005) FEMS Microbiol. Lett , vol.245 , pp. 299-306
    • Mbedi, S.1    Welker, M.2    Fastner, J.3    Wiedner, C.4
  • 21
    • 34248144321 scopus 로고    scopus 로고
    • Diversity of lactic acid bacteria associated with fish and the fish farm environment, established by amplified rRNA gene restriction analysis
    • Michel, C., Pelletier, C., Boussaha, M., Douet, D.-G., Lautraite, A., Tailliez, P. 2007. Diversity of lactic acid bacteria associated with fish and the fish farm environment, established by amplified rRNA gene restriction analysis. Appl. Environ. Microbiol. 73: 2947-2955.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 2947-2955
    • Michel, C.1    Pelletier, C.2    Boussaha, M.3    Douet, D.-G.4    Lautraite, A.5    Tailliez, P.6
  • 22
    • 0031449424 scopus 로고    scopus 로고
    • Specific amplification and restriction polymorphisms of the cyanobacterial rRNA operon spacer region
    • Neilan, B.A., Stuart, J.L., Goodman, A.E., Cox, P.T., Hawkins, P.R. 1997. Specific amplification and restriction polymorphisms of the cyanobacterial rRNA operon spacer region. Syst. Appl. Microbiol. 20: 612-621.
    • (1997) Syst. Appl. Microbiol , vol.20 , pp. 612-621
    • Neilan, B.A.1    Stuart, J.L.2    Goodman, A.E.3    Cox, P.T.4    Hawkins, P.R.5
  • 23
    • 33748762738 scopus 로고    scopus 로고
    • Detection of microcystin-producing cyanobacteria in finnish lakes with genus-specific microcystin synthetase gene E (mcyE) PCR and associations with environmental factors
    • Rantala, A., Rajaniemi-Wacklin, P., Lyra, C., Lepisto L., Rintala J., Mankiewicz-Boczek, J., Sivonen, K. 2006. Detection of microcystin-producing cyanobacteria in finnish lakes with genus-specific microcystin synthetase gene E (mcyE) PCR and associations with environmental factors. Appl. Environ. Microbiol. 72: 6101-6110.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 6101-6110
    • Rantala, A.1    Rajaniemi-Wacklin, P.2    Lyra, C.3    Lepisto, L.4    Rintala, J.5    Mankiewicz-Boczek, J.6    Sivonen, K.7
  • 24
    • 0034880972 scopus 로고    scopus 로고
    • Characterization by genotypic methods of symbiotic Nostoc strains isolated from five species of Gunnera
    • Rasmussen, U., Svenning, M.M. 2001. Characterization by genotypic methods of symbiotic Nostoc strains isolated from five species of Gunnera. Arch. Microbiol. 176: 204-210.
    • (2001) Arch. Microbiol , vol.176 , pp. 204-210
    • Rasmussen, U.1    Svenning, M.M.2
  • 27
    • 0030751308 scopus 로고    scopus 로고
    • Strain characterisation and classification of oxyphotobacteria in clone cultures on the basis of 16S rRNA sequences from the variable regions V6, V7, and V8
    • Rudi, K., Skulberg, O.M., Larsen, F., Jakobsen, K.S. 1997. Strain characterisation and classification of oxyphotobacteria in clone cultures on the basis of 16S rRNA sequences from the variable regions V6, V7, and V8. Appl. Environ. Microbiol. 63: 2593-2599.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 2593-2599
    • Rudi, K.1    Skulberg, O.M.2    Larsen, F.3    Jakobsen, K.S.4
  • 28
    • 0037133743 scopus 로고    scopus 로고
    • A novel gene encoding amidinotransferase in the cylindrospermopsin producing cyanobacterium Aphanizomenon ovalisporum
    • Shalev-Alon, G., Sukenik, A., Livnah, O., Schwarz, R., Kaplan, A. 2002. A novel gene encoding amidinotransferase in the cylindrospermopsin producing cyanobacterium Aphanizomenon ovalisporum. FEMS Microbiol. Lett. 209: 83-87.
    • (2002) FEMS Microbiol. Lett , vol.209 , pp. 83-87
    • Shalev-Alon, G.1    Sukenik, A.2    Livnah, O.3    Schwarz, R.4    Kaplan, A.5
  • 30
    • 0015076683 scopus 로고
    • Purification and properties of unicellular blue-green algae (order Chroococcales)
    • Stanier, R., Kunisawa, M., Mandel, M., Cohen-Bazire, G. 1971. Purification and properties of unicellular blue-green algae (order Chroococcales). Bacter. Rev. 35: 171-205.
    • (1971) Bacter. Rev , vol.35 , pp. 171-205
    • Stanier, R.1    Kunisawa, M.2    Mandel, M.3    Cohen-Bazire, G.4
  • 31
    • 2142860222 scopus 로고    scopus 로고
    • Quantitative real-time PCR for determination of microcystin synthetase E copy numbers for Microcystis and Anabaena in lakes
    • Vaitomaa, J., Rantala, A., Halinen, K., Rouhiainen, L., Tallberg, P., Mokelke, L., Sivonen, K. 2003. Quantitative real-time PCR for determination of microcystin synthetase E copy numbers for Microcystis and Anabaena in lakes. Appl. Environ. Microbiol. 69: 7289-7297.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 7289-7297
    • Vaitomaa, J.1    Rantala, A.2    Halinen, K.3    Rouhiainen, L.4    Tallberg, P.5    Mokelke, L.6    Sivonen, K.7
  • 33
    • 0031746448 scopus 로고    scopus 로고
    • Genotypic characterization of Bradyrhizobium strains nodulating endemic woody legumes of the Canary Islands by PCR-restriction fragment length polymorphism analysis of genes encoding 16SrRNA (16S rDNA) and 16S-23S rDNA intergenic spacers,repetitive extragenic palindromic PCR genomic fingerprinting and partial 16S rDNA sequencing
    • Vinuesa, P., Rademaker, J.L.W., de Bruijn, F.J., Werner, D., 1998. Genotypic characterization of Bradyrhizobium strains nodulating endemic woody legumes of the Canary Islands by PCR-restriction fragment length polymorphism analysis of genes encoding 16SrRNA (16S rDNA) and 16S-23S rDNA intergenic spacers,repetitive extragenic palindromic PCR genomic fingerprinting and partial 16S rDNA sequencing. Appl. Environ. Microbiol. 64: 2096-2104.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 2096-2104
    • Vinuesa, P.1    Rademaker, J.L.W.2    de Bruijn, F.J.3    Werner, D.4
  • 34
    • 0003061381 scopus 로고    scopus 로고
    • Watanabe, M.F, Harada, K, Carmichael, W.W, Fujiki, H, eds, CRC Press, Boca Raton, FL, pp
    • Watanabe, M. 1996. In: Watanabe, M.F., Harada, K., Carmichael, W.W., Fujiki, H., eds. Toxic Microcystis. CRC Press, Boca Raton, FL, pp. 13-34.
    • (1996) Toxic Microcystis , pp. 13-34
    • Watanabe, M.1
  • 35
    • 26844491209 scopus 로고    scopus 로고
    • Genetic variation of the bloom-forming cyanobacterium Microcystis aeruginosa within and among lakes: Implications for harmful algal blooms
    • Wilson, A.E., Sarnelle, O., Neilan, B.A., Salmon, T.P., Gehringer, M.M., Hay, M.E. 2005. Genetic variation of the bloom-forming cyanobacterium Microcystis aeruginosa within and among lakes: implications for harmful algal blooms. Appl. Environ. Microbiol. 71: 6126-6133.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 6126-6133
    • Wilson, A.E.1    Sarnelle, O.2    Neilan, B.A.3    Salmon, T.P.4    Gehringer, M.M.5    Hay, M.E.6


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