-
1
-
-
21044444993
-
Towards understanding the catalytic core structure of the spliceosome
-
Butcher, S.E. and Brow, D.A. 2005. Towards understanding the catalytic core structure of the spliceosome. Biochem. Soc. Trans. 33: 447-449.
-
(2005)
Biochem. Soc. Trans
, vol.33
, pp. 447-449
-
-
Butcher, S.E.1
Brow, D.A.2
-
2
-
-
0031671299
-
More than one way to splice an RNA: Branching without a bulge and splicing without branching in group II introns
-
Chu, V.T., Liu, Q., Podar, M., Perlman, P.S., and Pyle, A.M. 1998. More than one way to splice an RNA: Branching without a bulge and splicing without branching in group II introns. RNA 4: 1186-1202.
-
(1998)
RNA
, vol.4
, pp. 1186-1202
-
-
Chu, V.T.1
Liu, Q.2
Podar, M.3
Perlman, P.S.4
Pyle, A.M.5
-
3
-
-
0027327318
-
The phylogenetically invariant ACAGAGA and AGC sequences of U6 small nuclear RNA are more tolerant of mutation in human cells than in Saccharomyces cerevisiae
-
Datta, B. and Weiner, A.M. 1993. The phylogenetically invariant ACAGAGA and AGC sequences of U6 small nuclear RNA are more tolerant of mutation in human cells than in Saccharomyces cerevisiae. Mol. Cell. Biol. 13: 5377-5382.
-
(1993)
Mol. Cell. Biol
, vol.13
, pp. 5377-5382
-
-
Datta, B.1
Weiner, A.M.2
-
4
-
-
48649104354
-
A glimpse into the active site of a group II intron and maybe the spliceosome, too
-
Dayie, K.T. and Padgett, R.A. 2008. A glimpse into the active site of a group II intron and maybe the spliceosome, too. RNA 14: 1697-1703.
-
(2008)
RNA
, vol.14
, pp. 1697-1703
-
-
Dayie, K.T.1
Padgett, R.A.2
-
5
-
-
17844395704
-
Prp8 protein: At the heart of the spliceosome
-
Grainger, R.J. and Beggs, J.D. 2005. Prp8 protein: At the heart of the spliceosome. RNA 11: 533-557.
-
(2005)
RNA
, vol.11
, pp. 533-557
-
-
Grainger, R.J.1
Beggs, J.D.2
-
6
-
-
0347763706
-
Roles of protein subunits in RNA-protein complexes: Lessons from ribonuclease P
-
Hsieh, J., Andrews, A.J., and Fierke, C.A. 2004. Roles of protein subunits in RNA-protein complexes: Lessons from ribonuclease P. Biopolymers 73: 79-89.
-
(2004)
Biopolymers
, vol.73
, pp. 79-89
-
-
Hsieh, J.1
Andrews, A.J.2
Fierke, C.A.3
-
7
-
-
32444443532
-
Repositioning of the reaction intermediate within the catalytic center of the spliceosome
-
Konarska, M.M., Vilardell, J., and Query, C.C. 2006. Repositioning of the reaction intermediate within the catalytic center of the spliceosome. Mol. Cell 21: 543-553.
-
(2006)
Mol. Cell
, vol.21
, pp. 543-553
-
-
Konarska, M.M.1
Vilardell, J.2
Query, C.C.3
-
8
-
-
0038049910
-
Group II introns: Structure and catalytic versatility of large natural ribozymes
-
Lehmann, K. and Schmidt, U. 2003. Group II introns: Structure and catalytic versatility of large natural ribozymes. Crit. Rev. Biochem. Mol. Biol. 38: 249-303.
-
(2003)
Crit. Rev. Biochem. Mol. Biol
, vol.38
, pp. 249-303
-
-
Lehmann, K.1
Schmidt, U.2
-
9
-
-
20444502087
-
Structure, folding and mechanisms of ribozymes
-
Lilley, D.M. 2005. Structure, folding and mechanisms of ribozymes. Curr. Opin. Struct. Biol. 15: 313-323.
-
(2005)
Curr. Opin. Struct. Biol
, vol.15
, pp. 313-323
-
-
Lilley, D.M.1
-
10
-
-
34249890532
-
Opposing classes of prp8 alleles modulate the transition between the catalytic steps of pre-mRNA splicing
-
Liu, L., Query, C.C., and Konarska, M.M. 2007. Opposing classes of prp8 alleles modulate the transition between the catalytic steps of pre-mRNA splicing. Nat. Struct. Mol. Biol. 14: 519-526.
-
(2007)
Nat. Struct. Mol. Biol
, vol.14
, pp. 519-526
-
-
Liu, L.1
Query, C.C.2
Konarska, M.M.3
-
11
-
-
0026486883
-
A novel base-pairing interaction between U2 and U6 snRNAs suggests a mechanism for the catalytic activation of the spliceosome
-
Madhani, H.D. and Guthrie, C. 1992. A novel base-pairing interaction between U2 and U6 snRNAs suggests a mechanism for the catalytic activation of the spliceosome. Cell 71: 803-817.
-
(1992)
Cell
, vol.71
, pp. 803-817
-
-
Madhani, H.D.1
Guthrie, C.2
-
12
-
-
0025681699
-
Multiple roles for U6 snRNA in the splicing pathway
-
Madhani, H.D., Bordonne, R., and Guthrie, C. 1990. Multiple roles for U6 snRNA in the splicing pathway. Genes & Dev. 4: 2264-2277.
-
(1990)
Genes & Dev
, vol.4
, pp. 2264-2277
-
-
Madhani, H.D.1
Bordonne, R.2
Guthrie, C.3
-
13
-
-
0029959586
-
Interactions of the yeast U6 RNA with the premRNA branch site
-
McPheeters, D.S. 1996. Interactions of the yeast U6 RNA with the premRNA branch site. RNA 2: 1110-1123.
-
(1996)
RNA
, vol.2
, pp. 1110-1123
-
-
McPheeters, D.S.1
-
14
-
-
0002340095
-
RNA-RNA interactions in nuclear pre-mRNA splicing
-
eds. R.W. Simons and M. Grunberg-Manago, pp, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Nilsen, T.W. 1998. RNA-RNA interactions in nuclear pre-mRNA splicing. In RNA structure and function (eds. R.W. Simons and M. Grunberg-Manago), pp. 279-307. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1998)
RNA structure and function
, pp. 279-307
-
-
Nilsen, T.W.1
-
15
-
-
0344198459
-
The spliceosome: The most complex macromolecular machine in the cell?
-
Nilsen, T.W. 2003. The spliceosome: The most complex macromolecular machine in the cell? Bioessays 25: 1147-1149.
-
(2003)
Bioessays
, vol.25
, pp. 1147-1149
-
-
Nilsen, T.W.1
-
16
-
-
55549143970
-
Structure and function of an RNase H domain at the heart of the spliceosome
-
Pena, V., Rozov, A., Fabrizio, P., Lührmann, R., and Wahl, M.C. 2008. Structure and function of an RNase H domain at the heart of the spliceosome. EMBO J. 27: 2929-2940.
-
(2008)
EMBO J
, vol.27
, pp. 2929-2940
-
-
Pena, V.1
Rozov, A.2
Fabrizio, P.3
Lührmann, R.4
Wahl, M.C.5
-
17
-
-
27844569938
-
Group II introns: Ribozymes that splice RNA and invade DNA
-
eds. R.F. Gesteland et al, pp, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Pyle, A.M. and Lambowitz, A.M. 2006. Group II introns: Ribozymes that splice RNA and invade DNA. In The RNA world (eds. R.F. Gesteland et al.), pp. 469-506. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2006)
The RNA world
, pp. 469-506
-
-
Pyle, A.M.1
Lambowitz, A.M.2
-
18
-
-
0343986411
-
One motif - Many different reactions
-
Que Jr., L. 2000. One motif - Many different reactions. Nat. Struct. Biol. 7: 182-184.
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 182-184
-
-
Que Jr., L.1
-
19
-
-
0033053502
-
The C-terminal region of hPrp8 interacts with the conserved GU dinucleotide at the 59 splice site
-
Reyes, J.L., Gustafson, E.H., Luo, H.R., Moore, M.J., and Konarska, M.M. 1999. The C-terminal region of hPrp8 interacts with the conserved GU dinucleotide at the 59 splice site. RNA 5: 167-179.
-
(1999)
RNA
, vol.5
, pp. 167-179
-
-
Reyes, J.L.1
Gustafson, E.H.2
Luo, H.R.3
Moore, M.J.4
Konarska, M.M.5
-
20
-
-
33745755054
-
Proximity of conserved U6 and U2 snRNA elements to the 59 splice site region in activated spliceosomes
-
Rhode, B.M., Hartmuth, K., Westhof, E., and Lührmann, R. 2006. Proximity of conserved U6 and U2 snRNA elements to the 59 splice site region in activated spliceosomes. EMBO J. 25: 2475-2486.
-
(2006)
EMBO J
, vol.25
, pp. 2475-2486
-
-
Rhode, B.M.1
Hartmuth, K.2
Westhof, E.3
Lührmann, R.4
-
21
-
-
0035997396
-
Catalytic strategies of the hepatitis delta virus ribozymes
-
Shih, I.H. and Been, M.D. 2002. Catalytic strategies of the hepatitis delta virus ribozymes. Annu. Rev. Biochem. 71: 887-917.
-
(2002)
Annu. Rev. Biochem
, vol.71
, pp. 887-917
-
-
Shih, I.H.1
Been, M.D.2
-
22
-
-
58149088299
-
A critical assessment of the utility of protein-free splicing systems
-
this issue, doi: 10.1261/rna.1322709
-
Smith, D.J. and Konarska, M.M. 2009a. A critical assessment of the utility of protein-free splicing systems. RNA 15: (this issue). doi: 10.1261/rna.1322709.
-
(2009)
RNA
, vol.15
-
-
Smith, D.J.1
Konarska, M.M.2
-
23
-
-
58149086405
-
Identification and characterization of a short 29-39 bond-forming ribozyme
-
this issue, doi: 10.1261/rna.1321909
-
Smith, D.J. and Konarska, M.M. 2009b. Identification and characterization of a short 29-39 bond-forming ribozyme. RNA 15: (this issue). doi: 10.1261/rna.1321909.
-
(2009)
RNA
, vol.15
-
-
Smith, D.J.1
Konarska, M.M.2
-
24
-
-
0027739853
-
The U5 and U6 small nuclear RNAs as active site components of the spliceosome
-
Sontheimer, E.J. and Steitz, J.A. 1993. The U5 and U6 small nuclear RNAs as active site components of the spliceosome. Science 262: 1989-1996.
-
(1993)
Science
, vol.262
, pp. 1989-1996
-
-
Sontheimer, E.J.1
Steitz, J.A.2
-
25
-
-
0030833215
-
Metal ion catalysis during splicing of premessenger RNA
-
Sontheimer, E.J., Sun, S., and Piccirilli, J.A. 1997. Metal ion catalysis during splicing of premessenger RNA. Nature 388: 801-805.
-
(1997)
Nature
, vol.388
, pp. 801-805
-
-
Sontheimer, E.J.1
Sun, S.2
Piccirilli, J.A.3
-
26
-
-
36549083651
-
RNA catalysis: Ribozymes, ribosomes, and riboswitches
-
Strobel, S.A. and Cochrane, J.C. 2007. RNA catalysis: Ribozymes, ribosomes, and riboswitches. Curr. Opin. Chem. Biol. 11: 636-643.
-
(2007)
Curr. Opin. Chem. Biol
, vol.11
, pp. 636-643
-
-
Strobel, S.A.1
Cochrane, J.C.2
-
27
-
-
41749109563
-
Crystal structure of a self-spliced group II intron
-
Toor, N., Keating, K.S., Taylor, S.D., and Pyle, A.M. 2008. Crystal structure of a self-spliced group II intron. Science 320: 77-82.
-
(2008)
Science
, vol.320
, pp. 77-82
-
-
Toor, N.1
Keating, K.S.2
Taylor, S.D.3
Pyle, A.M.4
-
28
-
-
46449086933
-
Both catalytic steps of nuclear pre-mRNA splicing are reversible
-
Tseng, C.K. and Cheng, S.C. 2008. Both catalytic steps of nuclear pre-mRNA splicing are reversible. Science 320: 1782-1784.
-
(2008)
Science
, vol.320
, pp. 1782-1784
-
-
Tseng, C.K.1
Cheng, S.C.2
-
29
-
-
34250660469
-
The spliceosome: A ribozyme at heart?
-
Valadkhan, S. 2007. The spliceosome: A ribozyme at heart? Biol. Chem. 388: 693-697.
-
(2007)
Biol. Chem
, vol.388
, pp. 693-697
-
-
Valadkhan, S.1
-
30
-
-
0033962271
-
A tertiary interaction detected in a human U2-U6 snRNA complex assembled in vitro resembles a genetically proven interaction in yeast
-
Valadkhan, S. and Manley, J.L. 2000. A tertiary interaction detected in a human U2-U6 snRNA complex assembled in vitro resembles a genetically proven interaction in yeast. RNA 6: 206-219.
-
(2000)
RNA
, vol.6
, pp. 206-219
-
-
Valadkhan, S.1
Manley, J.L.2
-
31
-
-
0035909314
-
Splicing-related catalysis by protein-free snRNAs
-
Valadkhan, S. and Manley, J.L. 2001. Splicing-related catalysis by protein-free snRNAs. Nature 413: 701-707.
-
(2001)
Nature
, vol.413
, pp. 701-707
-
-
Valadkhan, S.1
Manley, J.L.2
-
32
-
-
0038719932
-
Characterization of the catalytic activity of U2 and U6 snRNAs
-
Valadkhan, S. and Manley, J.L. 2003. Characterization of the catalytic activity of U2 and U6 snRNAs. RNA 9: 892-904.
-
(2003)
RNA
, vol.9
, pp. 892-904
-
-
Valadkhan, S.1
Manley, J.L.2
-
33
-
-
36248936068
-
Protein-free spliceosomal snRNAs catalyze a reaction that resembles the first step of splicing
-
Valadkhan, S., Mohammadi, A., Wachtel, C., and Manley, J.L. 2007. Protein-free spliceosomal snRNAs catalyze a reaction that resembles the first step of splicing. RNA 13: 2300-2311.
-
(2007)
RNA
, vol.13
, pp. 2300-2311
-
-
Valadkhan, S.1
Mohammadi, A.2
Wachtel, C.3
Manley, J.L.4
-
34
-
-
52949131890
-
Crystal structure of the beta-finger domain of Prp8 reveals analogy to ribosomal proteins
-
Yang, K., Zhang, L., Xu, T., Heroux, A., and Zhao, R. 2008. Crystal structure of the beta-finger domain of Prp8 reveals analogy to ribosomal proteins. Proc. Natl. Acad. Sci. 105: 13817-13822.
-
(2008)
Proc. Natl. Acad. Sci
, vol.105
, pp. 13817-13822
-
-
Yang, K.1
Zhang, L.2
Xu, T.3
Heroux, A.4
Zhao, R.5
|