Assessment of the Cape Cod phylogeographic break using the bamboo worm Clymenella torquata reveals the role of regional water masses in dispersal

Journal of Heredity

Volumn 100, Issue 1, 2009, Pages 86-96

  Jennings, Robert M ^a   Shank, Timothy M ^b   Mullineaux, Lauren S ^b   Halanych, Kenneth M ^c  

^a UNIVERSITY OF MASSACHUSETTS BOSTON   (United States)

^b WOODS HOLE OCEANOGRAPHIC INSTITUTION   (United States)

^c AUBURN UNIVERSITY   (United States)

Author keywords

Asymmetric migratin; atp6; Maldanid; nad4

Indexed keywords

ANIMAL EXPERIMENT; ARTICLE; CLYMENELLA TORQUATA; CONTROLLED STUDY; DNA STRAND BREAKAGE; GENE FLOW; GENE FREQUENCY; GENE SEQUENCE; GENETIC VARIABILITY; HAPLOTYPE; MITOCHONDRIAL GENE; NONHUMAN; PHYLOGENY; PHYLOGEOGRAPHY; POPULATION STRUCTURE; PRIORITY JOURNAL; WORM;

ANIMALS; DEMOGRAPHY; ECOSYSTEM; GENE FLOW; GENE REGULATORY NETWORKS; GENETIC VARIATION; GENETICS, POPULATION; GEOGRAPHY; HAPLOTYPES; MASSACHUSETTS; PHYLOGENY; POLYCHAETA; WETLANDS;

ANNELIDA; CLYMENELLA TORQUATA; INVERTEBRATA; MALDANIDAE;

EID: 58149096195     PISSN: 00221503     EISSN: 14657333     Source Type: Journal    
DOI: 10.1093/jhered/esn067     Document Type: Article

References (51)

1. Anraku M. 1964. Influence of the Cape Cod Canal on the hydrography and on the copepods in Buzzards Bay and Cape Cod Bay, Massachusetts. I. Hydrography and distribution of copepods. Limnol Oceanogr. 9:46-60.
2. Bastrop R, Juerss K, Sturmbauer C. 1998. Cryptic species in a marine polychaete and their independent introduction from North America to Europe. Mol Biol Evol. 15:97-103.
3. Beerli P. 2002. MIGRATE: documentation and program, part of LAMARC. Version 1.6. [Internet]. Available from: URL http://evolution.genetics. washington.edu/lamarc.html. Revised August 23, 2002. Distributed over the Internet. [Downloaded: Version 2.0.3, 12/19/2004].
4. Beerli P. 2006. Comparison of Bayesian and maximum-likelihood inference of population genetic parameters. Bioinformatics. 22:341-345.
5. Bernatchez L, Wilson CC. 1998. Comparative phylogeography of Nearctic and Palearctic fishes. Mol Ecol. 7:431-452.
6. Cassens I, Mardulyn P, Milinkovitch MC. 2005. Evaluating intraspecific "network" construction methods using simulated sequence data: do existing algorithms outperform the global maximum parsimony approach? Syst Biol. 54:363-372.
7. Castelloe J, Templeton AR. 1994. Root probabilities for intraspecific gene trees under neutral coalescent theory. Mol Phylogenet Evol. 3:102-113.
8. Caudill CC, Bucklin A. 2004. Molecular phylogeography and evolutionary history of the estuarine copepod, Acartia tonsa, on the Northwest Atlantic coast. Hydrobiologia. 511:91-102.
9. Churchill JH. 1985. Properties of flow within the coastal boundary layer off Long Island, New York. J Phys Oceanogr. 15:898-916.
10. Collin R. 2001. The effects of mode of development on phylogeography and population structure of North Atlantic Crepidula (Gastropoda: Caplytraeidae). Mol Ecol. 10:2249-2262.
11. Cunningham CW, Collins TM. 1998. Beyond area relationships: extinction and recolonization in molecular marine biogeography. In: DeSalle R, Schierwater B, editors. Molecular approaches to ecology and evolution. Basel (Switzerland): Birkhäuser Verlag. p. 297-321.
12. Dahlgren TG, Weinberg JR, Halanych KM. 2000. Phylogeography of the ocean quahog (Arctica islandica): influences of paleoclimate on genetic diversity and species range. Mar Biol. 137:487-495.
13. Dillon RT, Manzi JJ. 1992. Population genetics of the hard clam, Mercenaria mercenaria, at the northern limit of its range. Can J Fish Aquac Sci. 49:2574-2578.
14. Duncan CS, Goff JA, Austin JA, Fulthorpe CS. 2000. Tracking the last sea-level cycle: seafloor morphology and shallow stratigraphy of the latest Quaternary New Jersey middle continental shelf. Mar Geol. 170:395-421.
15. Engle VD, Summers JK. 1999. Latitudinal gradients in benthic community composition in Western Atlantic estuaries. J Biogeogr. 26:1007-1023.
16. Franz DR, Worley EK, Merrill AS. 1981. Distribution patterns of common seastars of the middle Atlantic continental shelf of the northwest Atlantic (Gulf of Maine to Cape Hatteras). Biol Bull. 160:394-418.
17. Gardner JPA, Palmer NL. 1998. Size-dependent, spatial and temporal genetic variation at a leucine aminopeptidase (LAP) locus among blue mussel (Mytilus galloprovincialis) populations along a salinity gradient. Mar Biol. 132:275-281.
18. Govindarajan AF, Halanych KM, Cunningham CW. 2005. Mitochondrial evolution and phylogeography in the hydrozoan Obelia geniculata (Cnidaria). Mar Biol. 146:213-222.
19. Hare MP, Weinberg JR. 2005. Phylogeography of surfclams, Spisula solidissima, in the western North Atlantic based on mitochondrial and nuclear DNA sequences. Mar Biol. 146:707-716.
20. Hayden BP, Dolan R. 1976. Coastal marine fauna and marine climates of the Americas. J Biogeogr. 3:71-81.
21. Holder K, Montgomerie R, Friesen VL. 1999. A test of the glacial refugium hypothesis using patterns of mitochondrial and nuclear DNA sequence variation in rock ptarmigan (Lagopus mutus). Evolution. 53:1936-1950.
22. Hutchins LW. 1947. The bases for temperature zonation in geographical distribution. Ecol Monogr. 17:325-335.
23. Jennings RM, Halanych KM. 2005. Mitochondrial genomes of Clymenella torquata (Maldanidae) and Riftia pachyptila (Siboglinidae): evidence for conserved gene order in Annelida. Mol Biol Evol. 22:210-222.
24. Kelly DW, MacIsaac HJ, Heath DD. 2006. Vicariance and dispersal effects on phylogeographic structure and speciation in a widespread estuarine invertebrate. Evolution. 60:257-267.
25. Koehn RK, Milkman R, Mitton JB. 1976. Population genetics of marine pelecypods. 4. Selection, migration and genetic differentiation in the blue mussel Mytilus edulis. Evolution. 30:2-32.
26. Lee CE. 1999. Rapid and repeated invasions of fresh water by the copepod Eurytemora affinis. Evolution. 53:1423-1434.
27. Lermusiaux PFJ. 2001. Evolving the subspace of the three-dimensional multiscale ocean variability: Massachusetts Bay. J Mar Syst. 29:385-422.
28. Lynch DR, Holboke MJ, Naimie CE. 1997. The Maine coastal current: spring climatological circulation. Cont Shelf Res. 17:605-634.
29. Lynch DR, Ip JTC, Naimie CE, Werner FE. 1996. Comprehensive coastal circulation model with application to the Gulf of Maine. Cont Shelf Res. 16:875-906.
30. Maddison DR, Maddison WP. 2000. MacClade. Sunderland (MA): Sinauer Associates, Inc.
31. Mangum CP. 1962. Studies on speciation in the Maldanid polychaetes of the North American Atlantic Coast. I. A taxonomic revision of three species of the subfamily Euclymeninae. Yale Peabody Mus Postilla. 65, p. 12.
32. Mangum CP. 1964. Studies on speciation in Maldanid polychaetes of the North American Atlantic Coast. II. Distribution and competitive interaction of five sympatric species. Limnol Oceanogr. 9:12-26.
33. Mantel N. 1967. The detection of disease clustering and a generalized regression approach. Cancer Res. 27:209-220.
34. Nei M. 1987. Molecular evolutionary genetics. New York: Columbia University Press.
35. Newell GE. 1951. The life-history of Clymenella torquata (Leidy). Proc Zool Soc Lond. 121:561-590.
36. Pielou EC. 1991. After the ice age. Chicago: University of Chicago Press.
37. Rice WR. 1989. Analyzing tables of statistical tests. Evolution. 43:223-225.
38. Schneider S, Roessli D, Excoffier L. 2000. Arlequin: a software for population genetics data analysis. Geneva (Switzerland): Genetics and Biometry Laboratory, University of Geneva.
39. Smith GW, Hunter LE. 1989. Late Wisconsinan deglaciation of coastal Maine. In: Tucker RD, Marvinney RG, editors. Studies in Maine geology, volume 6: quaternary geology. Augusta (ME): Maine Geological Survey. p. 13-32.
40. Smouse PE, Long JC, Sokal RR. 1986. Multiple regression and correlation extensions of the Mantel test of matrix correspondence. Syst Zool. 35:627-632.
41. Spaulding ML, Gordon RB. 1982. A nested NUMERICAL tidal model of the Southern New England Bight. Ocean Eng. 9:107-126.
42. Swofford DL. 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods). Sunderland (MA): Sinauer Associates, Inc.
43. Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 123:585-595.
44. Tajima F. 1996. The amount of DNA polymorphism maintained in a finite population when the neutral mutation rate varies among sites. Genetics. 143:1457-1465.
45. Valentine JW. 1966. Numerical analysis of marine molluscan ranges on the extratropical Northeastern Pacific shelf. Limnol Oceanogr. 11:198-211.
46. Vieira MEC. 2000. The long-term residual circulation in Long Island Sound. Estuaries. 23:199-207.
47. Vogler AP, DeSalle R. 1993. Phylogeographic patterns in coastal North American tiger beetles (Cicindela dorsalis) inferred from mitochondrial DNA sequences. Evolution. 47:1192-1202.
48. Wares JP. 2002. Community genetics in the northwestern Atlantic intertidal. Mol Ecol. 11:1131-1144.
49. Wares JP, Cunningham CW. 2001. Phylogeography and historical ecology of the North Atlantic intertidal. Evolution. 55:2455-2469.
50. Weinberg JR, Dahlgren TG, Trowbridge N, Halanych KM. 2003. Genetic differences within and between species of deep-sea crabs (Chaceon) from the North Atlantic Ocean. Biol Bull. 204:318-326.
51. Young AM, Torres C, Mack JE, Cunningham CW. 2002. Morphological and genetic evidence for vicariance and refugium in Atlantic and Gulf of Mexico populations of the hermit crab Pagurus longicarpus. Mar Biol. 140:1059-1066.