Molecular identification and typing of Burkholderia pseudomallei and Burkholderia mallei: when is enough enough?

Transactions of the Royal Society of Tropical Medicine and Hygiene

Volumn 102, Issue SUPPL. 1, 2008, Pages

  Antonov, Valery A ^a   Tkachenko, Galina A ^a   Altukhova, Viktoriya V ^a   Savchenko, Sergey S ^a   Zinchenko, Olga V ^a   Viktorov, Dmitry V ^a   Zamaraev, Valery S ^a   Ilyukhin, Vladimir I ^a   Alekseev, Vladimir V ^a  

^a Plague Control Institute   (Russian Federation)

Author keywords

Burkholderia mallei; Burkholderia pseudomallei; Glanders; Melioidosis; PCR; Typing

Indexed keywords

BACTERIAL PROTEIN; PROTEIN FLIC; RNA 16S; RNA 23S; UNCLASSIFIED DRUG;

AMPLICON; ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BOX PCR; BURKHOLDERIA MALLEI; BURKHOLDERIA PSEUDOMALLEI; CONTROLLED STUDY; EARLY DIAGNOSIS; GENE CLUSTER; GENE SEQUENCE; HORSE DISEASE; MELIOIDOSIS; MOLECULAR BIOLOGY; MULTILOCUS SEQUENCE TYPING; NONHUMAN; POLYMERASE CHAIN REACTION; PULSED FIELD GEL ELECTROPHORESIS; RANDOM AMPLIFIED POLYMORPHIC DNA; REP PCR; RIBOTYPING; STRAIN DIFFERENCE; TYPE III SECRETION SYSTEM; VARIABLE NUMBER OF TANDEM REPEAT;

ANIMALS; BIOTERRORISM; BURKHOLDERIA MALLEI; BURKHOLDERIA PSEUDOMALLEI; DNA FINGERPRINTING; DNA, BACTERIAL; GLANDERS; HUMANS; MELIOIDOSIS; MOLECULAR SEQUENCE DATA; RUSSIA;

ANIMALIA; BURKHOLDERIA; BURKHOLDERIA MALLEI; BURKHOLDERIA PSEUDOMALLEI;

EID: 58049178235     PISSN: 00359203     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0035-9203(08)70030-0     Document Type: Article

References (33)

1. Holden M.T., Titball R.W., Peacock S.J., Cerdeno-Tarraga A.M., Atkins T., Crossman L.C., et al. Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei. Proc Natl Acad Sci USA 101 (2004) 14240-14245
2. Nierman W.C., Deshazer D., Kim H.S., Tettelin H., Nelson K.E., Feldblyum T., et al. Structural flexibility in the Burkholderia mallei genome. Proc Natl Acad Sci USA 101 (2004) 14246-14251
3. Srinivasan A., Kraus C.N., DeShazer D., Becker P.M., Dick J.D., Spacek L., et al. Glanders in a military research microbiologist. N Engl J Med 345 (2001) 256-258
4. Carlson P., and Seppanen M. Melioidosis presenting as urinary tract infection in a previously healthy tourist. Scand J Infect Dis 32 (2000) 92-93
5. Issack M.I., Bundhun C.D., and Gokhool H. Melioidosis in Mauritius. Emerg Infect Dis 11 (2005) 139-140
6. Rolim D.B. Melioidosis, northeastern Brazil. Emerg Infect Dis 11 (2005) 1458-1460
7. Cheng A.C., and Currie B.J. Melioidosis: epidemiology, pathophys-iology, and management. Clin Microbiol Rev 18 (2005) 383-416
8. Dance D.A. Melioidosis: the tip of the iceberg?. Clin Microbiol Rev 4 (1991) 52-60
9. Dance D.A. Melioidosis as an emerging global problem. Acta Trop 74 (2000) 115-119
10. Wuthiekanun V., Chierakul W., Rattanalertnavee J., Langa S., Sirodom D., Wattanawaitunechai C., et al. Serological evidence for increased human exposure to Burkholderia pseudomallei following the tsunami in southern Thailand. J Clin Microbiol 44 (2006) 239-240
11. Rotz L.D., Khan A.S., Lillibridge S.R., Ostroff S.M., and Hughes J.M. Public health assessment of potential biological terrorism agents. Emerging Infect Dis 8 (2002) 225-230
12. Inglis T.J., Chiang D., Lee G.S., and Chor-Kiang L. Potential misidentification of Burkholderia pseudomallei by API 20NE. Pathology 30 (1998) 62-64
13. Boom R., Sol C.J., Salimans M.M., Jansen C.L., Wertheim-van Dillen P.M., and van der Noordaa J. Rapid and simple method for purification of nucleic acids. J Clin Microbiol 28 (1990) 495-503
14. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning. A Laboratory Manual. 2nd Ed. (1989), Cold Spring Harbor
15. Godoy D., Randle G., Simpson A.J., Aanensen D.M., Pitt T.L., Kinoshita R., et al. Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41 (2003) 2068-2079
16. Liu Y., Wang D., Yap E.H., Yap E., and Lee M.A. Identification of a novel repetitive DNA element and its use as a molecular marker for strain typing and discrimination of ara- from ara+ Burkholderia pseudomallei isolates. J Med Microbiol 51 (2002) 76-82
17. Duangsonk K., Gal D., Mayo M., Hart C.A., Currie B.J., and Winstanley C. Use of a variable amplicon typing scheme reveals considerable variation in the accessory genomes of isolates of Burkholderia pseudomallei. J Clin Microbiol 44 (2006) 1323-1334
18. Antonov V.A., Altukhova V.V., Savchenko S.S., Zamaraev V.S., Iliukhin V.I., and Alekseev V.V. The use of multilocus sequence typing (MLST) and randomly amplified polymorphic DNA (RAPD) for the differentiation between strains of Burkholderia mallei [in Russian]. Mol Gen Mikrobiol Virusol 3 (2007) 3-9
19. Bauernfeind A., Roller C., Meyer D., Jungwirth R., and Schneider I. Molecular procedure for rapid detection of Burkholderia mallei and Burkholderia pseudomallei. J Clin Microbiol 36 (1998) 2737-2741
20. Antonov V.A., Tkachenko G.A., Altukhova V.V., Zamaraev V.S., Iliukhin V.I., and Trofimov D. Use of PCR for identification of Burkholderia mallei [in Russian]. Mol Gen Mikrobiol Virusol 1 (2004) 12-17
21. Kunakorn M., Raksakait K., Sethaudom C., Sermswan R.W., and Dharakul T. Comparison of three PCR primer sets for diagnosis of septicemic melioidosis. Acta Trop 74 (2000) 247-251
22. Altukhova V.V., Antonov V.A., Tkachenko G.A., Zinchenko O.V., Zamaraev V.S., Plekhanova N.G., et al. The use of polymerase chain reaction for detection of the agents of glanders and melioidosis using experimental infection [in Russian]. Mol Gen Mikrobiol Virusol 3 (2007) 22-27
23. Smith-Vaughan H.C., Gal D., Lawrie P.M., Winstanley C., Sriprakash K.S., and Currie B.J. Ubiquity of putative type III secretion genes among clinical and environmental Burkholderia pseudomallei isolates in Northern Australia. J Clin Microbiol 41 (2003) 883-885
24. Thibault F.M., Valade E., and Vidal D.R. Identification and discrimination of Burkholderia pseudomallei, B. mallei, and B. thailandensis by real-time PCR targeting type III secretion system genes. J Clin Microbiol 42 (2004) 5871-5874
25. Novak R.T., Glass M.B., Gee J.E., Gal D., Mayo M.J., Currie B.J., et al. Development and evaluation of a real-time PCR assay targeting the type III secretion system of Burkholderia pseudomallei. J Clin Microbiol 44 (2006) 85-90
26. Li W.H. Simple method for constructing phylogenetic trees from distance matrices. Proc Natl Acad Sci USA 78 (1981) 1085-1090
27. Ruppitsch W., Stoger A., Indra A., Grif K., Schabereiter-Gurtner C., Hirschl A., et al. Suitability of partial 16S ribosomal RNA gene sequence analysis for the identification of dangerous bacterial pathogens. J Appl Microbiol 102 (2007) 852-859
28. Currie B.J., Gal D., Mayo M., Ward L., Godoy D., Spratt B.G., et al. Using BOX-PCR to exclude a clonal outbreak of melioidosis. BMC Infect Dis 7 (2007) 68
29. U'Ren J.M., Schupp J.M., Pearson T., Hornstra H., Friedman C.L., Smith K.L., et al. Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping. BMC Microbiol 7 (2007) 23
30. Harvey S.P., and Minter J.M. Ribotyping of Burkholderia mallei isolates. FEMS Immunol Med Microbiol 44 (2005) 91-97
31. Chantratita N., Vesaratchavest M., Wuthiekanun V., Tiyawisutsri R., Ulziitogtokh T., Akcay E., et al. Pulsed-field gel electrophoresis as a discriminatory typing technique for the biothreat agent Burkholderia mallei. Am J Trop Med Hyg 74 (2006) 345-347
32. Romero C.M., Deshazer D., Feldblyum T., Ravel J., Woods D., Kim H.S., et al. Genome sequence alterations detected upon passage of Burkholderia mallei ATCC 23344 in culture and in mammalian hosts. BMC Genomics 7 (2006) 228
33. Smith E.E., Buckley D.G., Wu Z., Saenphimmachak C., Hoffman L.R., D'Argenio D.A., et al. Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patients. Proc Natl Acad Sci USA 103 (2006) 8487-8492