Structure optimization by an improved tabu search in the AB off-lattice protein model

Proceedings - The 1st International Conference on Intelligent Networks and Intelligent Systems, ICINIS 2008

Volumn , Issue , 2008, Pages 123-126

  Lin, Xiaoli ^a   Zhu, Hongbing ^a,b  

^a HIROSHIMA KOKUSAI GAKUIN UNIVERSITY   (Japan)

^b WUHAN UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

COMBINATORIAL MATHEMATICS; COMBINATORIAL OPTIMIZATION; CONSTRAINED OPTIMIZATION; CRYSTAL LATTICES; HEURISTIC METHODS; INTELLIGENT CONTROL; INTELLIGENT NETWORKS; INTELLIGENT SYSTEMS; OPTIMIZATION; PROTEIN FOLDING; STRUCTURAL OPTIMIZATION;

ADAPTIVE MEMORIES; COMBINATORIAL OPTIMIZATION PROBLEMS; HEURISTIC APPROACHES; LATTICE MODELS; LATTICE PROTEIN MODELS; NONLINEAR CONSTRAINTS; OPTIMUM SOLUTIONS; SEARCHING ABILITIES; STRUCTURE OPTIMIZATIONS; TWO DIMENSIONS; TWO TYPES; UNCONSTRAINED OPTIMIZATION PROBLEMS;

TABU SEARCH;

EID: 58049149491     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICINIS.2008.77     Document Type: Conference Paper

References (13)

1. K. F. Lau, and K. A. Dill, A Lattice Statistical Mechanics Model of the Conformational and Sequence Space of Proteins, Macromolecules, 1989, 22: 3986-3997.
2. C. B. Anfinsen, Principles That Govern the Folding of Protein Chains, Science, 1973, 181(4096): 223-227.
3. L. Wang, and H. Zhou, Perspective Roles of Short-and Long-Range Interactions in Protein Folding, Wuhan University Journal of Natural Sciences, 2004, 9: 182-187.
4. J. Liu, L. H. Wang, L. L. He, and F. Shi, Analysis of ToyModel for Protein Folding Based on Particle Swarm Optimization Algorithm, ICNC, 2005, (3): 636-645.
5. H. -P. Hsu, V. Mehra, and P. Grassberger, Structure Optimization in an Off-Lattice Protein Model, Phys. Rev. , 2003, E 68, 037703.
6. X. L. Zhang, and X. L. Lin, Protein Folding Prediction Using an Improved Genetic-Annealing Algorithm, The 19th Australian Joint Conference on Artificial Intelligence, 2006, 1196-1200.
7. F. H. Stillinger, T. Head-Gordon, and C. L, Hirshfel. Toy Model for Protein Folding, Phys. Rev., 1993, E48, 1469-1477.
8. X. L. Zhang, and X. L. Lin, Effective Protein Folding Prediction Based on Genetic-Annealing Algorithm in Toy Model, 2006 Workshop on Intelligent Computing and Bioinformatics of CAS, 2006, 21-26.
9. X. L. Zhang, and X. L. Lin, C. P. Wan, and T. T. Li, Genetic-Annealing Algorithm for 3D Off-Lattice Protein Folding Model. The 2nd BioDM Workshop on Data Mining for Biomedical Applications, PAKDD Workshops, 2007, 186-193.
10. G. Connettina, and P. Valerio, Finding Line Segments with Tabu Search, IEICE TRANS. INF. and SYST., 2001, E84-D(12).
11. R. Tariq, W. Yi, and L. Kuo-Bin, Multiple Sequence Alignment Using Tabu Search, In Proc. Second Asia-Pacific Bioinformatics Conference, 2004.
12. R. W. Eglese, Simulated Annealing: A Tool for Operational Research, European Journal of Operational Research, 1990, 46: 271.
13. F. H. Stillinger, Collective Aspects of Protein Folding Illustrated by a Toy Model, Phys. Rev., 1995, E52, 2872-2877.