Using hierarchical task network planning techniques to create custom web search services over multiple biomedical databases

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 5178 LNAI, Issue PART 2, 2008, Pages 42-49

  García Remesal, Miguel ^a  

^a Biomedical Informatics Group   (Spain)

Author keywords

Automated planning; Database integration; Hierarchical task network planning

Indexed keywords

COMPLEX NETWORKS; DATABASE SYSTEMS; INFORMATION RETRIEVAL; KNOWLEDGE BASED SYSTEMS; QUERY PROCESSING; WEBSITES;

AUTOMATED PLANNING; COMPLEX QUERIES; COMPLEX SEARCHES; DATABASE INTEGRATION; DECOMPOSITION METHODS; DIVIDE AND CONQUER; HIERARCHICAL TASK NETWORKS; PLANNING OPERATORS;

WEB SERVICES;

EID: 57749192655     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-85565-1_6     Document Type: Conference Paper

References (21)

1. Galperin, M.Y.: The Molecular Biology Database Collection: 2008 Update. Nucleic Acids Research 36(Database issue), D2-D4 (2008)
2. http://www.ncbi.nlm.nih.gov/pubmed/ (last accessed, April 2008)
3. http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim (last accessed, April 2008)
4. http://www.eddnal.com/ (last accessed, April 2008)
5. Sacerdoti, E.: The nonlinear nature of plans. In: Proceedings of the International Joint Conference on Artificial Intelligence, pp. 206-214 (1975)
6. Erol, K., Hendler, J., Nau, D.: Semantics for hierarchical task-network planning. Technical Report CS TR-3239, UMIACS TR-94-31, ISR-TR-95-9. University of Maryland (1994)
7. Ghallab, M., Nau, D., Traverso, P.: Automated Planning: Theory and Practice. Morgan Kaufmann, San Francisco (2004)
8. Nau, D., Au, T.C., Ilghami, O., Kuter, U., Murdock, J.W., Wu, D., Yaman, F.: SHOP2: An HTN Planning System. Journal of Artificial Intelligence Research 20, 379-404 (2003)
9. http://www.cs.umd.edu/projects/shop/description.html (last accessed, April 2008)
10. Dias, G., Oliveira, J.L., Vicente, F., Martín-Sánchez, F.: Integrating Medical and Genomic Data: a Successful Example of Rare Diseases. Stud. Health Technol. Inform. 124, 125-130 (2006)
11. Haas, L.M., Schwarz, M., Kodali, P., Kotlar, E., Rice, J.E., Swopre, W.C.: DiscoveryLink: A system for Integrated Access to Life Sciences Data Sources. IBM Systems Journal 40(2), 489-511 (2001)
12. Stevens, R., Baker, P., Bechhofer, S., Ng, G., Jacoby, A., Paton, N.W., Goble, C.A., Brass, A.: TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources. Bioinformatics 16(2), 184-186 (2000)
13. Alonso-Calvo, R., Maojo, V., Billhardt, H., Martín-Sánchez, F., García-Remesal, M., Pérez-Rey, D.: An agent- and ontology-based system for integrating public gene, protein and disease databases. Journal of Biomedical Informatics 40(1), 17-29 (2007)
14. Miled, Z.B., Li, N., Bukhres, O.: BACIIS: Biological and Chemical Information Integration System. Journal of Database Management 16(3), 72-85 (2005)
15. Blum, A., Furst, M.: Fast Planning Through Planning Graph Analysis. Artificial Intelligence 90, 281-300 (1997)
16. http://www.orpha.net/consor/cgi-bin/index.php (last accessed, April 2008)
17. http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene (last accessed, April 2008)
18. http://www.genenames.org/ (last accessed, April 2008)
19. http://www.expasy.ch/sprot/ (last accessed, April 2008)
20. http://www.rcsb.org/pdb/home/home.do (last accessed, April 2008)
21. http://www.ebi.ac.uk/msd/ (last accessed, April 2008)