Light-induced hydrogen bonding pattern and driving force of electron transfer in AppA BLUF domain photoreceptor

Journal of Biological Chemistry

Volumn 283, Issue 45, 2008, Pages 30618-30623

  Ishikita, Hiroshi ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BOLTZMANN EQUATION; ELECTRON TRANSITIONS; HYDROGEN; HYDROGEN BONDS;

BLUE LIGHTS; BLUF DOMAINS; CHARGE SEPARATION PROCESSES; DARK STATES; DO-MAINS; DRIVING FORCES; ELECTRON TRANSFERS; HYDROGEN BONDINGS; PROTEIN CONFORMATIONS; RHODOBACTER SPHAEROIDES; SIDE CHAINS; SIGNALING STATES;

POISSON EQUATION;

GLUTAMINE; QUERCETIN; TYROSINE;

ARTICLE; BLUE LIGHT; CALCULATION; CRYSTAL STRUCTURE; DARKNESS; ELECTRON TRANSPORT; ENERGY; HYDROGEN BOND; LIGHT; NONHUMAN; OXIDATION REDUCTION REACTION; PHOTORECEPTOR; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTON TRANSPORT; RHODOBACTER SPHAEROIDES; ROTATION;

AMINO ACID SUBSTITUTION; BACTERIAL PROTEINS; CRYSTALLOGRAPHY, X-RAY; ELECTRON TRANSPORT; FLAVOPROTEINS; HYDROGEN BONDING; LIGHT; MODELS, CHEMICAL; MUTATION, MISSENSE; PHOTORECEPTORS, MICROBIAL; PROTEIN STRUCTURE, TERTIARY; RHODOBACTER SPHAEROIDES;

RHODOBACTER SPHAEROIDES;

EID: 57649233076     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M803864200     Document Type: Article

References (33)

1. Han, Y., Braatsch, S., Osterloh, L., and Klug, G. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 12306-12311
2. Kraft, B. J., Masuda, S., Kikuchi, J., Dragnea, V., Tollin, G., Zaleski, J. M., and Bauer, C. E. (2003) Biochemistry 42, 6726-6734
3. Gauden, M., van Stokkum, I. H. M., Key, J. M., Luhrs, D. C., van Grondelle, R., Hegemann, P., and Kennis, J. T. M. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 10895-10900
4. Gauden, M., Grinstead, J. S., Laan, W., van Stokkum, I. H. M., Avila-Perez, M., Toh, K. C., Boelens, R., Kaptein, R., van Grondelle, R., Hellingwerf, K. J., and Kennis, J. T. M. (2007) Biochemistry 46, 7405-7415
5. Masuda, S., and Bauer, C. E. (2002) Cell 110, 613-623
6. Laan, W., van der Horst, M. A., van Stokkum, I. H. M., and Hellingwerf, K. J. (2003) Photochem. Photobiol. 78, 290-297
7. Anderson, S., Dragnea, V., Masuda, S., Ybe, J., Moffat, K., and Bauer, C. (2005) Biochemistry 44, 7998-8005
8. Jung, A., Reinstein, J., Domratcheva, T., Shoeman, R. L., and Schlichting, I. (2006) J. Mol. Biol. 362, 717-732
9. Masuda, S., Hasegawa, K., and Ono, T.-A. (2005) Biochemistry 44, 1215-1224
10. Kita, A., Okajima, K., Morimoto, Y., Ikeuchi, M., and Miki, K. (2005) J. Mol. Biol. 349, 1-9
11. Unno, M., Masuda, S., Ono, T.-A., and Yamauchi, S. (2006) J. Am. Chem. Soc. 128, 5638-5639
12. Grinstead, J. S., Avila-Perez, M., Hellingwerf, K. J., Boelens, R., and Kaptein, R. (2006) J. Am. Chem. Soc. 128, 15066-15067
13. Grinstead, J. S., Hsu, S.-T., Laan, W., Bonvin, A. M., Hellingwerf, K. J., Boelens, R., and Kaptein, R. (2006) ChemBioChem 7, 187-193
14. Masuda, S., Tomida, Y., Ohta, H., and Takamiya, K. (2007) J. Mol. Biol. 368, 1223-1230
15. Ishikita, H. (2007) J. Biol. Chem. 282, 25240-25246
16. Ishikita, H. (2008) Biochemistry 47, 4394-4402
17. Ishikita, H., and Knapp, E. W. (2006) Biophys. J. 90, 3886-3896
18. Brooks, B. R., Bruccoleri, R. E., Olafson, B. D., States, D. J., Swaminathan, S., and Karplus, M. (1983) J. Comput. Chem. 4, 187-217
19. Takahashi, R., Okajima, K., Suzuki, H., Nakamura, H., Ikeuchi, M., and Noguchi, T. (2007) Biochemistry 46, 6459-6467
20. Popovic, D. M., Zmiric, A., Zaric, S. D., and Knapp, E.-W. (2002) J. Am. Chem. Soc. 124, 3775-3782
21. Bashford, D., and Karplus, M. (1990) Biochemistry 29, 10219-10225
22. Ishikita, H., Saenger, W., Biesiadka, J., Loll, B., and Knapp, E.-W. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 9855-9860
23. Draper, R. D., and Ingraham, L. L. (1968) Arch. Biochem. Biophys. 125, 802-808
24. Kumler, W. D., and Eiler, J. J. (1943) J. Am. Chem. Soc. 65, 2355-2361
25. Tommos, C., and Babcock, G. T. (2000) Biochim. Biophys. Acta 1458, 199-219
26. Tommos, C., Skalicky, J. J., Pilloud, D. L., Wand, A. J., and Dutton, P. L. (1999) Biochemistry 38, 9495-9507
27. Müh, F., Williams, J. C., Allen, J. P., and Lubitz, W. (1998) Biochemistry 37, 13066-13074
28. Ishikita, H., Loll, B., Biesiadka, J., Galstyan, A., Saenger, W., and Knapp, E.-W. (2005) FEBS Lett. 579, 712-716
29. Harriman, A. (1987) J. Phys. Chem. 91, 6102-6104
30. Moser, C. C., Keske, J. M., Warncke, F., Farid, R. S., and Dutton, P. L. (1992) Nature 355, 796-802
31. Page, C. C., Moser, C. C., Chen, X., and Dutton, P. L. (1999) Nature 402, 47-52
32. Laan, W., Gauden, M., Yeremenko, S., van Grondelle, R., Kennis, J. T., and Hellingwerf, K. J. (2006) Biochemistry 45, 51-60
33. Ishikita, H., Soudackov, A. V., and Hammes-Schiffer, S. (2007) J. Am. Chem. Soc. 129, 11146-11152