Progress in developing a new detection method for the harmful algal bloom species, Karenia brevis, through multiwavelength spectroscopy

Harmful Algae

Volumn 8, Issue 2, 2009, Pages 189-195

  Spear, Adam H ^a   Daly, Kendra ^a   Huffman, Debra ^a   Garcia Rubio, Luis ^a  

^a UNIVERSITY OF SOUTH FLORIDA   (United States)

Author keywords

Absorbance; Detection; Harmful algal blooms (HABs); Karenia brevis; Multiwavelength spectroscopy; Optical properties; Scattering

Indexed keywords

ALGAE; KARENIA BREVIS;

EID: 57649198314     PISSN: 15689883     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.hal.2008.05.001     Document Type: Article

References (38)

1. Aas E. Refractive index of phytoplankton derived from its metabolite composition. J. Plankton Res. 18 12 (1996) 2223-2249
2. Alupoaei, C.E., 2001. Modeling of the transmission spectra of microorganisms. Master of Science Thesis. University of South Florida.
3. Alupoaei C.E., and Garcia-Rubio L.H. An interpretation model for the UV-vis spectra of microorganisms. Chem. Eng. Commun. 192 (2005) 198-218
4. Alupoaei C.E., and Garcia-Rubio L.H. Growth of behavior of microorganisms using UV-vis spectroscopy: Escherichia coli. Biotechnol. Bioeng. 85 2 (2004) 163-167
5. Alupoaei C.E., Olivares J.A., and Garcia-Rubio L.H. Quantitative spectroscopy analysis of prokaryotic cells: vegetative cells and spores. Biosens. Bioelectron. 19 (2004) 893-903
6. Anderson, D.M., Hoagland, P., Kaoru, Y., White, A.W., 2000. Estimated annual economic impacts from harmful algal blooms (HABs) in the United States. Woods Hole Oceanographic Institute. Technical Report, WHOI-2000-11.
7. Bjornland T., Haxo F.T., and Liaaen-Jensen S. Carotenoids of the Florida red tide dinoflagellate Karenia brevis. Biochem. Syst. Ecol. 31 (2003) 1147-1162
8. Blackburn S.I., Bolch C.J.S., Haskard K.A., and Hallegraeff G.M. Reproductive compatibility among four global populations of the toxic dinoflagellate Gymnodinium catenatum (Dinophyceae). Phycologia 40 1 (2001) 78-87
9. Callahan M.R., Rose J.B., and Garcia-Rubio L. Use of multiwavelength transmission spectroscopy for the characterization of Cryptosporidium parvum oocysts: quantitative interpretation. Environ. Sci. Technol. 37 22 (2003) 5254-5261
10. Elicabe G., and Garcia-Rubio L. Latex particle size distribution from turbidimetric measurements combining regularization and Generalized Cross-Validation techniques. J. Colloid Interface Sci. 129 (1988) 192-200
11. Elicabe G., and Garcia-Rubio L. Latex particle size distribution from turbidimetry using a combination of regularization techniques and generalized cross-validation. Adv. Chem. Ser. 227 (1990) 83-104
12. Evens T.J., Kirkpatrick G., Millie D., Chapman D., and Schofield O. Photophysiological responses of the toxic red-tide dinoflagellate Gymnodinium breve (Dinophyceae) under natural sunlight. J. Plankton Res. 23 11 (2001) 1177-1193
13. Freifelder D. Physical Biochemistry. 2nd ed. (1982), W.H. Freeman and Company 504 pp. (Chapter 14)
14. Geesey M.E., and Tester P.A. Gymnodinium breve: ubiquitous in Gulf of Mexico waters?. In: Smayda T.J., and Shimizu Y. (Eds). Toxic Phytoplankton Blooms in the Sea (1993), Elsevier, Amsterdam 251-255
15. Golub G.H., Heath M., and Wahba G. Generalized Cross-Validation as a method for choosing a good ridge parameter. Technometrics 21 (1979) 215-223
16. Goodwin K.D., Cotton S.A., Scorzetti G., and Fell J.W. A DNA hybridization assay to identify toxic dinoflagellates in coastal waters: detection of Karenia brevis in the Rookery Bay National Estuarine Research Reserve. Harmful Algae 4 (2005) 411-422
17. Heil, C., Truby, E., Wolny, J., Pigg, R., Richardson, B., Garrett, M., Haywood, A., Petrik, K., Flewelling, L., Stone, E., Cook, S., Scott, P., Steidinger, K., Landsberg, J., in press. The multi-species nature of the 2005 Karenia bloom in the eastern Gulf of Mexico. In: Proceedings of the 12th International Conference on Harmful Algae.
18. Jasti S., Sieracki M.E., Poulton N.J., Giewat M.W., and Rooney-Varga J.N. Phylogenetic diversity and specificity of bacteria closely associated with Alexandrium spp. and other phytoplankton. Appl. Environ. Microbiol. 71 7 (2005) 3483-3494
19. Jeffrey S.W., Mantoura R.F.C., and Bjørnland T. Data for the identification of 47 key phytoplankton pigments. In: Jeffrey S.W., Mantoura R.F.C., and Wright S.W. (Eds). Phytoplankton Pigments in Oceanography: Guidelines to Modern Methods (1997), UNESCO, Paris 449-559
20. Kerker M. The Scattering of Light and Other Electromagnetic Radiation (1969), Academic Press, New York
21. Kirkpatrick G.J., Millie D.F., Moline M.A., and Schofield O. Optical discrimination of a phytoplankton species in natural mixed populations. Limnol. Oceanogr. 45 2 (2000) 467-471
22. Magana H., Contreras C., and Villareal T.A. A historical assessment of Karenia brevis in the western Gulf of Mexico. Harmful Algae 2 3 (2003) 163-171
23. Mahoney, K., 2001. Optical properties of Karenia brevis and implications for remote sensing reflectance. Ph.D. Dissertation. University of Southern Mississippi.
24. Mattley Y., Leparc G., Potter G., and García Rubio L. Light scattering and absorption model for the quantitative interpretation of human platelet spectral data. Photochem. Photobiol. 71 5 (2000) 610-619
25. Millie D.F., Kirkpatrick G.J., and Vinyard B.T. Relating photosynthetic pigments and in vivo optical density spectra to irradiance for the Florida red-tide dinoflagellate Gymnodinium breve. Mar. Ecol. Prog. Ser. 120 (1995) 65-75
26. Millie D.F., Schofield O.M., Kirkpatrick G.J., Johnsen G., Tester P.A., and Vinyard B.T. Detection of harmful algal blooms using photopigments and absorption signatures: a case study of the Florida red tide dinoflagellate Gymnodinium breve. Limnol. Oceanogr. 42 5 (1997) 1240-1251
27. McKay, L.L.E., 2004. K. brevis cells' swimming speeds and internal cellular states over a range of temperatures and light intensities. Master's Thesis. North Carolina State University.
28. Örnólfsdóttir E.B., Pinckney J.L., and Tester P.A. Quantification of the relative abundance of the toxic dinoflagellate, Karenia brevis (Dinophyta), using unique photopigments. J. Phycol. 39 2 (2003) 449-457
29. Robbins I.C., Kirkpatrick G.J., Blackwell S.M., Hillier J., Knight C.A., and Moline M.A. Improved monitoring of HABs using autonomous underwater vehicles (AUV). Harmful Algae 5 6 (2006) 749-761
30. Rizzo P.J., Jones M., and Ray S.M. Isolation and properties of isolated nuclei from the Florida red tide dinoflagellate Gymnodinium breve (Davis). J. Protozool. 29 2 (1982) 217-222
31. Schofield O., Grzymski J., Bisset W.P., Kirkpatrick G.J., Millie D.F., Moline M., and Roesler C.S. Optical monitoring and forecasting for harmful algal blooms: possibility or pipe dream?. J. Phycol. 35 6 (1999) 1477-1496
32. Snyder R.V., Guerrero M.A., Sinigalliano C.D., Winshell J., Perez R., Lopez J.V., and Rein K.S. Localization of polyketide synthase encoding genes to the toxic dinoflagellate Karenia brevis. Phytochemistry 66 15 (2005) 1767-1780
33. Steidinger K.A., Truby E.W., and Dawes C.J. Ultrastructure of the red tide dinoflagellate Gymnodinium breve. I. General description. J. Phycol. 14 1 (1978) 72-79
34. Steidinger K.A., Vargo G.A., Tester P.A., and Tomas C.R. Bloom dynamics and physiology of Gymnodinium breve with emphasis on the Gulf of Mexico. In: Anderson D.M., Cembella A.D., and Hallegraeff G.M. (Eds). Physiological Ecology of Harmful Algal Blooms (1998), Springer-Verlag, Berlin 133-153
35. Tuminello P.S., Arakawa E.T., Khare B.N., Wrobel J.M., Querry M.R., and Milham M.E. Optical Properties of Bacillus subtilis from 0.2 to 2.5 μm. Appl. Optics 36 13 (1997) 2818-2823
36. Van Der Hulst H. Light Scattering by Small Particles (1957), Wiley, New York
37. Van Krevelen D.W. Properties of Polymers: Their Correlation with Chemical Structure, their Numerical Estimation and Prediction from Additive Group Contributions. 3rd ed. (1990), Elsevier, New York
38. Waltham C., Boyle J., Ramey B., and Smit J. Light scattering and absorption caused by bacterial activity in water. Appl. Optics 33 (1994) 7536-7540