Genetic analysis and fine-mapping of a dwarfing with withered leaf-tip mutant in rice

Journal of Genetics and Genomics

Volumn 35, Issue 12, 2008, Pages 715-721

  Jiang, Liang ^a,b   Guo, Longbiao ^a   Jiang, Hua ^a   Zeng, Dali ^a   Hu, Jiang ^a   Wu, Liwen ^a,b   Liu, Jian ^a   Gao, Zhenyu ^a   Qian, Qian ^a  

^a CHINA NATIONAL RICE RESEARCH INSTITUTE   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

dwarf; fine mapping; mutant; rice

Indexed keywords

AMYLASE; GIBBERELLIN;

ARTICLE; CHROMOSOME 3; CONTROLLED STUDY; DWL1 GENE; ENZYME ACTIVITY; GENE MAPPING; GENE MUTATION; GENETIC ANALYSIS; LEAF DAMAGE; LEAF GROWTH; LINKAGE ANALYSIS; MOLECULAR CLONING; NONHUMAN; PHENOTYPE; PLANT GENE; PLANT HEIGHT; PLANT LEAF; RICE; TN1 GENE;

CHROMOSOME MAPPING; ETHYL METHANESULFONATE; GENES, PLANT; GENOMICS; MUTAGENESIS; MUTAGENS; MUTATION; OPEN READING FRAMES; ORYZA SATIVA; PHENOTYPE; PLANT DISEASES; PLANT LEAVES;

ORYZA SATIVA;

EID: 57649196606     PISSN: 16738527     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1673-8527(08)60226-X     Document Type: Article

References (44)

1. Akagi H., Yokozeki Y., Inagaki A., Mori K., and Fujimura T. Micron a microsatellite-targeting transposable element in the rice genome. Mol. Genet. Genomics 266 (2001) 471-480
2. Ashikari M., Wu J., Yano M., Sasaki T., and Yoshimura A. Rice gibberellin-insensitive dwarf mutant gene Dwarf 1 encodes the α-subunit of GTP-binding protein. Proc. Natl. Acad. Sci. USA 96 (1999) 10284-10289
3. Azpiroz R., Wu Y., LoCascio J.C., and Feldmann K.A. An Arabidopsis brassinosteroid-dependent mutant is blocked in cell elongation. Plant Cell 10 (1998) 219-230
4. Borlaug N.E. Contributions of conventional plant breeding to food production. Science 219 (1983) 689-693
5. Chaffey N., Cholewa E., Regan S., and Sundberg B. Secondary xylem development in Arabidopsis: A model for wood formation. Physiol. Plant 114 (2002) 594-600
6. Donld C.M. The breeding of crop ideotypes. Euphytica 17 (1968) 385-403
7. Evans L.T. Adaptation and the ecology of yield. In: Evans L.T. (Ed). Crop Evolution, Adaptation and Yield (1993), Cambridge Univesity Press, Cambridge 113-168
8. Gale M.D., and Youssefian S. Dwarfing genes in wheat. In: Russell G.E. (Ed). Progress in Plant Breeding (1985), Butterworths, London 1-35
9. Gomi K., Sasaki A., Itoh H., Ueguchi-Tanaka M., Ashikari M., Kitano H., and Matsuoka M. GID2, an F-box subunit of the SCF E3 complex, specifically interacts with phosphorylated SLR1 protein and regulates the gibberellin-dependent degradation of SLR1 in rice. Plant J. 37 (2004) 626-634
10. Guo L.B., Chu C.C., and Qian Q. Rice mutants and functional genomics. Chin. Bull. Bot. 23 (2006) 1-13 (in Chinese with an English abstract).
11. Guo L.B., Xing Y.Z., Mei H.W., Xu C.G., Shi C.H., Wu P., and Luo L.J. Dissection of component QTL expression in yield formation in rice. Plant Breed. 124 (2005) 127-132
12. Guo Y., Yuan Z., Sun Y., Jing L., and Huang H. Characterizations of the uro mutant suggest that the URO gene is involved in the auxin action in Arabidopsis. Acta. Bot. Sin. 46 (2004) 846-853
13. Hong Z., Ueguchi-Tanaka M., Fujioka S., Takatsuto S., Yoshida S., Hasegawa Y., Ashikari M., Kitano H., and Matsuoka M. The rice brassinosteroid-deficient dwarf2 mutant, defective in the rice homolog of Arabidopsis DIMINUTO/DWARF1, is rescued by the endogenously accumulated alternative bioactive brassinosteroid, dolichosterone. Plant Cell 17 (2005) 2243-2254
14. Hooley R. Gibberellins: Perception, transduction and responses. Plant Mol. Biol. 26 (1994) 1529-1555
15. Ikeda A., Ueguchi-Tanaka M., Sonoda Y., Kitano H., Koshioka M., Futsuhara Y., Matsuoka M., and Yamaguchi J. Slender rice, a constitutive Gibberellin response mutant, is caused by a null mutation of the SLR1 gene, an ortholog of the height-regulating gene GAI/RGA/RHT/D8. Plant Cell 13 (2001) 999-1010
16. Itoh H., Tatsumi T., Sakamoto T., Otomo K., Toyomasu T., Kitano H., Ashikari M., Ichihara S., and Matsuoka M. A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase. Plant Mol. Biol. 54 (2004) 533-547
17. Itoh H., Ueguchi-Tanaka M., Sentoku N., Kitano H., Matsuoka M., and Kobayashi M. Cloning and functional analysis of two gibberellin 3 beta -hydroxylase genes that are differently expressed during the growth of rice. Proc. Natl. Acad. Sci. USA 98 (2001) 8909-8914
18. Jiang H., Guo L.B., and Qian Q. Recent progress on rice genetics in China. J. Integr. Plant Biol. 49 (2007) 776-790
19. Jiang H., Guo L.B., Xue D.W., Zeng D.L., Zhang G.H., Dong G.J., Gu M.H., and Qian Q. Genetic analysis and genemapping of two reduced-culm-number mutants in rice. J. Integr. Plant Biol. 48 (2006) 341-347
20. Khush G.S. New plant type of rice for increasing the genetic yield potential. In: Nanda J.S. (Ed). Rice Breeding and Genetics (2000), Science Publishers, New Hampshire 99-108
21. Kinoshita T. Report of the committee on gene symbolization, nomenclature and linkage groups. Rice Genet. Newslett. 12 (1995) 9-115
22. Lander E.S., Green P., Abrahamson J., Barlow A., Daly M.J., Lincoin S.E., and Newburg L. Mapmaker: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1 (1987) 174-181
23. Li J., and Chory J. A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction. Cell 90 (1997) 929-938
24. Li X.Y., Qian Q., Fu Z., Wang Y., Xiong G., Zeng D.L., Wang X., Liu X., Teng S., Hiroshi F., Yuan M., Luo D., Han B., and Li J. Control of tillering in rice. Nature 422 (2003) 618-621
25. McCouch S.R., Teytelman L., Xu Y., Lobos K.B., Clare K., and Lincoln S. Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res. 9 (2002) 257-279
26. Mitsunaga S., Tashira T., and Yamaguchi J. Identification and characterization of gibberellin insensitive mutants selected from among dwarf mutants of rice. Theor. Appl. Genet. 87 (1994) 705-712
27. Mori M., Nomura T., Ooka H., Ishizaka M., Yokota T., Sugimoto K., Okabe K., Kajiwara H., Satoh K., Yamamoto K., Hirochika H., and Kikuchi S. Isolation and characterization of a rice dwarf mutant with a defect in brassinosteroid biosynthesis. Plant Physiol. 130 (2002) 1152-1161
28. Multani D.S., Briggs S.P., Chamberlin M.A., Blakeslee J.J., Murphy A.S., and Johal G.S. Loss of an MDR transporter in compact stalks of maize br2 and sorghum dw3 mutants. Science 302 (2003) 81-84
29. Murakami Y. A new rice seedling test for gibberellins, "microdrop method" and its use for testing extracts of rice and morning glory. Bot. Mag. 81 (1968) 33-43
30. Murray M.G., and Thompson W.F. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8 (1980) 4321-4325
31. Ogi Y., Kato H., Maruyama K., and Kikuchi F. The effects on the culm length and their agronomic characters caused by semidwarfing genes at the sd-1 locus in rice. Japan J. Breed 48 (1993) 267-275
32. Piepho H.P. A simple procedure for yield component analysis. Euphytica 84 (1995) 43-48
33. Qian Q., and Cheng S.H. Rice Genetics and Functional Genomics (2006), Science Press, Beijing, China (in Chinese).
34. Reiter W.D., Chapple C.C.S., and Somerville C.R. Altered growth and cell walls in a fucose-deficient mutant of Arabidopsis. Science 261 (1993) 1032-1035
35. Ross J.J., Murfet I.C., and Reid J.B. Gibberellin mutants. Physiol. Plant 100 (1997) 550-560
36. Ruellanda E., Campalansa A., Selman-Houseinb G., Puigdomenecha P., and Rigaua J. Cellular and subcellular localization of the lignin biosynthetic enzymes caffeic acid-o-methyltransferase, cinnamylalcohol dehydrogenase and cinnamoyl-coenzyme A reductase in two monocots, sugarcane and maize. Physiol. Plant 117 (2003) 93-99
37. Shomura A., Izawa T., Ebana K., Ebitani T., Kanegae H., Konishi S., and Yano M. Deletion in a gene associated with grain size increased yields during rice domestication. Nat. Genet. 40 (2008) 1023-1028
38. Song X.J., Huang W., Shi M., Zhu M.Z., and Lin H.X. A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase. Nat. Genet. 39 (2007) 623-630
39. Takahashi T., Gasch A., Nishizawa N., and Chua N.H. The DIMINUTO gene of Arabidopsis is involved in regulating cell elongation. Genes Dev. 9 (1995) 97-107
40. Takeda K. Internode elongation and dwarfism in some gramineous plants. Gamma Field Sym. 16 (1997) 1-18
41. Tanabe S., Ashikari M., Fujisawa Y., Kato H., and Iwasaki Y. A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length. Plant Cell 17 (2005) 776-790
42. Temnykh S., William D.P., Ayres N., Cartinhour S., Hauck N., Lipovich L., Cho Y.G., Ishii T., and McCouch S.R. Mapping and genome organization of microsatellite sequences in rice. Theor. Appl. Genet. 100 (2000) 697-712
43. Wu P. Analysis of the genetic relativity between plant height and tillering of rice using the RFLP markers. Sci. China (Ser C) 26 (1996) 264-270
44. Xue W., Xing Y., Weng X., Zhao Y., Tang W., Wang L., Zhou H., Yu S., Xu C., Li X., and Zhang Q. Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice. Nat. Genet. 40 (2008) 761-767