Development of 101 novel SSR markers and construction of an SSR-based genetic linkage map in cucumber (Cucumis sativus L.)

Breeding Science

Volumn 58, Issue 4, 2008, Pages 475-483

  Fukino, Nobuko ^a   Yoshioka, Yosuke ^a   Kubo, Nakao ^b   Hirai, Masashi ^b   Sugiyama, Mitsuhiro ^a   Sakata, Yoshiteru ^a   Matsumoto, Satoru ^a  

^a NATIONAL INSTITUTE OF VEGETABLE AND TEA SCIENCE   (Japan)

^b KYOTO PREFECTURAL UNIVERSITY   (Japan)

Author keywords

Cucumis sativus L.; Genetic linkage map; Recombinant inbred lines, simple sequence repeat

Indexed keywords

CUCUMIS; CUCUMIS MELO; CUCUMIS SATIVUS;

EID: 57649138548     PISSN: 13447610     EISSN: 13473735     Source Type: Journal    
DOI: 10.1270/jsbbs.58.475     Document Type: Article

References (44)

1. Boualem, A., M. Fergany, R. Fernandez, C. Troadec, A. Martin, H.Morin, M. Sari, F. Collin, J.M. Flowers, M. Pitrat, M.D. Purugganan, C. Dogimont and A. Bendahmane (2008) A conserved mutation in an ethylene biosynthesis enzyme leads to andromonoecy in melons. Science 321: 836-837.
2. Bradeen, J.M., J.E. Staub, C. Wye, R. Antonise and J. Peleman (2001) Towards an expanded and integrated linkage map of cucumber (Cucumis sativus L.). Genome 44: 111-119.
3. Brotman, Y., I. Kovalski, C. Dogimont, M. Pitrat, V. Portnoy, N. Katzir and R. Perl-Treves (2005) Molecular markers linked to papaya ring spot virus resistance and Fusarium race 2 resistance in melon. Theor. Appl. Genet. 110: 337-345.
4. Chaitieng, B., A. Kaga, N. Tomoka, T. Isemura, Y. Kuroda and D.A. Vaughan (2006) Development of a black gram [Vigna mungo (L.) Hepper] linkage map and its comparison with an azuki bean [Vigna angularis (Willd.) Ohwi and Ohashi] linkage map. Theor. Appl. Genet. 113: 1261-1269.
5. Danin-Poleg, Y., N. Reis, S. Baudracco-Arnas, M. Pitrat, J.E. Staub, M.Oliver, P. Arus, C.M. de Vicente and N. Katzir (2001) Development and characterization of microsatellite markers in Cucumis. Theor. Appl. Genet. 102: 61-72.
6. Fan, Z., M.D. Robbins and J.E. Staub (2006) Population development by phenotypic selection with subsequent marker-assisted selection for line extraction in cucumber (Cucumis sativus L.). Theor. Appl. Genet. 112: 843-855.
7. Fazio, G., J.E. Staub and S.M. Chung (2002) Development and characterization of PCR markers in cucumber. J. Amer. Soc. Hort. Sci. 127: 545-557.
8. Fazio, G., S.M. Chung and J.E. Staub (2003a) Comparative analysis of response to phenotypic and marker-assisted selection for multiple lateral branching in cucumber (Cucumis sativus L.). Theor. Appl. Genet. 112: 875-883.
9. Fazio, G., J.E. Staub and M.R. Stevens (2003b) Genetic mapping and QTL analysis of horticultural traits in cucumber (Cucumis sativus L.) using recombinant inbred lines. Theor. Appl. Genet. 107: 864-874.
10. Fernandez-Silva, I., I. Eduardo, J. Blanca Postigo, C. Esteras, B. Pico, F. Nuez Vinals, P. Arus, J. Garcia-Mas, A. Monforte (2008) Bin mapping of genomic and EST-derived SSRs in melon (Cucumis melo L.). Theor. Appl. Genet. DOI 10.1007/s00122-008-0883-3.
11. Fukino, N., Y. Sakata, M. Kunihisa and S. Matsumoto (2007) Characterisation of novel simple sequence repeat (SSR) markers for melon (Cucumis melo L.) and their use for genotype identification. J. Hort. Sci. Biotechnol. 82: 330-334.
12. Fukino, N., M. Sugiyama, T. Ohara, H. Sainoki, N. Kubo, M. Hirai and S. Matsumoto (2008a) Detection of quantitative trait loci affecting short lateral branching in Cucumis melo. Proceedidngs of the IXth EUCARPIA meeting on genetics and breeding of Cucurbitaceae 505-509.
13. Fukino, N., T. Ohara, M. Sugiyama, Y. Sakata, M. Kunihisa and S.Matsumoto (2008b) Identification of QTLs for resistance to powdery mildew and SSR markers diagnostic for powdery mildew resistance genes in melon (Cucumis melo L.). Theor. Appl. Genet. DOI 10.1007/s00122-008-0885-1.
14. Fukuoka, H., T. Nunome, Y. Minamiyama, I. Kono, N. Namiki and A.Kojima (2005) Read2Marker: a data processing tool for microsatellite marker development from a large data set. BioTechniques 39: 472-476.
15. Gonzalo, M.J., M. Oliver, J. Garcia-Mas, A. Monfort, R. Dolcet Sanjuan, N. Katzir, P. Arús and A.J. Monforte (2005) Simple-sequence repeat markers used in merging linkage maps of melon (Cucumis melo L.). Theor. Appl. Genet. 110: 802-811.
16. Kennard, W.C., K. Poetter, A. Dijkuizen, V. Meglic, J.E. Staub and M.J. Havey (1994) Linkage among RFLP, RAPD, isozyme, disease resistance, and morphological markers in narrow and wide crosses of cucumber. Theor. Appl. Genet. 89: 42-48.
17. Kong, Q., C. Xiang and Z. Yu (2006) Development of EST-SSRs in Cucumis sativus from sequence database. Mol. Ecol. Notes 6: 1234-1236.
18. Kosambi, D.D. (1944) The estimation of map distance from recombination values. Ann. Eugen. 12: 172-175.
19. Lander, E., P. Green, J. Abrahamson, A. Barlow, M. Daley, S. Lincoln and L. Newburg (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
20. Li, X.Z., J.S. Pan, G. Wang, L.B. Tian, L.T. Si, A.Z. Wu and R. Cai (2005) Localization of genes for lateral branch and female sex expression and construction of a molecular linkage map in cucumber (Cucumis sativus L.) with RAPD markers. Prog. Nat. Sci. 15: 143-148.
21. Matsumoto, S., M. Kunihisa and N. Fukino (2005) Quick and easy DNA extraction from multiple samples of strawberry for classification of cultivars. Research Results of Vegetable and Tea Science 2004: 11-12.
22. Meglic, V. and J.E. Staub (1996) Inheritance and linkage relationships of allozyme and morphological loci in cucumber (Cucumis sativus L.). Theor. Appl. Genet. 92: 865-872.
23. Monforte, A.J., M. Oliver, M.J. Gonzalo, J.M. Alvarez, R. Dolcet-Sanjuan and P. Arus (2004) Identification of quantitative trait loci involved in fruit quality traits in melon (Cucumis melo L.). Theor. Appl. Genet. 108: 750-758.
24. Morales, M., M. Luís-Arteaga, J.M. Álvarez, R. Dolcet-Sanjuan, A. Monfort, P. Arús and J. Garcia-Mas (2002) Marker saturation of the region flanking the gene NSV conferring resistance to the melon necrotic spot Carmovirus (MNSV) in melon. J. Amer. Soc. Hort. Sci. 127: 540-544.
25. Morishita, M., K. Sugiyama, T. Saito and Y. Sakata (2002) An improved evaluation method for screening and selecting powdery mildew resistant cultivars and lines of cucumber (Cucumis sativus L.). J. Jpn. Soc. Hortic. Sci. 71: 94-100.
26. Munger, H.M. and R.W. Robinson (1991) Nomenclature of Cucumis melo L. Cucurbit Genetics Cooperative Report 14: 43-45.
27. Nunome, T., S. Negoro, K. Miyatake, H. Yamaguchi and H. Fukuoka (2006) A protocol for the construction of microsatellite enriched genomic library. Plant Mol. Biol. Rep. 24: 305-312.
28. Park, Y.H., S. Sensoy, C. Wye, R. Antonise, J. Peleman and M.J. Havey (2000) A genetic map of cucumber composed of RAPDs, RFLPs, AFLPs, and loci conditioning resistance to papaya ringspot and zucchini yellow mosaic viruses. Genome 43: 1003-1010.
29. Pelgas, B., S. Beauseigle, V. Acheré, S. Jeandroz, J. Bousquet and N.Isabel (2006) Comparative genome mapping among Picea glauca, P. mariana x P. rubens and P. abies, and correspondence with other Pinaceae. Theor. Appl. Genet. 113: 1371-1393.
30. Perchepied, L. and M. Pitrat (2004) Polygenic inheritance of partial resistance to Fusarium oxysporum f. sp. melonis race 1.2 in melon. Phytopathology 94: 1331-1336.
31. Phan, H.T.T., S.R. Ellwood, J.K. Hane, R. Ford, M. Materne and R.P.Oliver (2007) Extensive macrosynteny between Medicago truncatula and Lens culinaris ssp. culinaris. Theor. Appl. Genet. 114: 549-558.
32. Ritschel, P.S., T.C. Lins, L. Tristan, G.S.C. Buso, J.A. Buso and M.E. Ferreira (2004) Development of microsatellite markers from an enriched genomic library for genetic analysis of melon (Cucumis melo L.). BMC Plant Biol. 4: 9.
33. Rudi, K., J. Treimo, B. Moen, I. Rud and G. Vegarud (2002) Multicolor post-PCR labeling of DNA fragments with fluorescent ddNTPs. BioTechniques 33: 502-506.
34. Rogers, J., R. Garcia, W. Shelledy, J. Kaplan, A. Arya, Z. Johnson, M.Bergstrom, L. Novakowski, P. Nair, A. Vinson, D. Newman, G.Heckman and J. Cameron (2006) An initial genetic linkage map of the rhesus macaque (Macaca mulatta) genome using human microsatellite loci. Genomics 87: 30-38.
35. Sakata, Y., N. Kubo, M. Morishita, E. Kitadani, M. Sugiyama and M.Hirai (2006) QTL analysis of powdery mildew resistance in cucumber (Cucumis sativus L.). Theor. Appl. Genet. 112: 243-250.
36. Serquen, F.C., J. Bacher and J.E. Staub (1997) Mapping and QTL analysis of horticultural traits in a narrow cross in cucumber (Cucumis sativus L.). Mol. Breed. 3: 257-268.
37. Staub, J.E. and V. Meglic (1993) Molecular genetic markers and their legal relevance for cultivar discrimination: a case study in cucumber. HortTechnology 3: 291-300.
38. Sun, Z., J.E. Staub, S.M. Chung and R.L. Lower (2006) Identification and comparative analysis of quantitative trait loci associated with parthenocarpy in processing cucumber. Plant Breed. 125: 281-287.
39. Wang, G., J.S. Pan, X.Z. Li, H.L. He, A.Z. Wu and R. Cai (2005) Construction of a cucumber genetic linkage map with SRAP markers and location of the genes for lateral branch traits. Sci. China (Ser. C) 48: 213-220.
40. Watcharawongpaiboon, N. and J. Chunwongse (2008) Development and characterization of microsatellite markers from an enriched genomic library of cucumber (Cucumis sativus). Plant Breed. 127: 74-81.
41. Wu, Y.Q. and Y. Huang (2006) An SSR genetic map of Sorghum bicolor (L.) Moench and its comparison to a published genetic map. Genome 50: 84-89.
42. Yuan, X.J., X.Z. Li, J.S. Pan, G. Wang, S. Jiang, X.H. Li, S.L. Deng, H.L.He, M.X. Si, L. Lai, A.Z. Wu, L.H. Zhu and R. Cai (2008) Genetic linkage map construction and location of QTLs for fruit-related traits in cucumber. Plant Breed. 127: 180-188.
43. Zalapa, J.E., J.E. Staub, J.D. McCreight, S.M. Chung and H. Cuevas (2007) Detection of QTL for yield-related traits using recombinant inbred lines derived from exotic and elite US Western Shipping melon germplasm. Theor. Appl. Genet. 114: 1185-1201.
44. Zhen, L., J. Pan, Y. Fuan, Q. Tao, H. He, L. Si and R. Cai (2008) Development and fine mapping of three co-dominant SCAR markers linked to the M/m gene in the cucumber plant (Cucumis sativus L.). Theor. Appl. Genet. DOI 10.1007/s00122-008-0859-3.