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Volumn , Issue SUPPL. 21, 2008, Pages

Analysis of gene-expression data using J-express

Author keywords

Gene expression; J express; Microarray; Spot intensity quantitation

Indexed keywords

COMPUTER PROGRAM; DATA ANALYSIS SOFTWARE; DOCUMENTATION; GENE CLUSTER; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE FUNCTION; GENETIC ANALYSIS; GENETIC DATABASE; INFORMATION RETRIEVAL; NONHUMAN; PRACTICE GUIDELINE; PRIORITY JOURNAL; PROCESS DESIGN; PROTEIN MICROARRAY; QUALITY CONTROL; REVIEW;

EID: 57549083810     PISSN: 19343396     EISSN: 1934340X     Source Type: Journal    
DOI: 10.1002/0471250953.bi0703s21     Document Type: Review
Times cited : (62)

References (29)
  • 2
    • 2342646842 scopus 로고    scopus 로고
    • LSimpute: Accurate estimation of missing values in microarray data with least squares methods
    • Bø, T.H., Dysvik, B., and Jonassen, I. 2004. LSimpute: Accurate estimation of missing values in microarray data with least squares methods. Nucleic Acids Res. 32:e34.
    • (2004) Nucleic Acids Res , vol.32
    • Bø, T.H.1    Dysvik, B.2    Jonassen, I.3
  • 3
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad, B.M., Irizarry, R.A., Astrand, M., and Speed, T.P. 2003. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 22:185-193.
    • (2003) Bioinformatics , vol.22 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 4
    • 4243071596 scopus 로고    scopus 로고
    • The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum
    • Bozdech, Z., Llina, M., Pulliam, B.L.,Wong, E.D., Zhu, J., and DeRisi, J.L. 2003. The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. PLoS Biol 1:001-016.
    • (2003) PLoS Biol , vol.1 , pp. 001-016
    • Bozdech, Z.1    Llina, M.2    Pulliam, B.L.3    Wong, E.D.4    Zhu, J.5    DeRisi, J.L.6
  • 5
    • 0034714421 scopus 로고    scopus 로고
    • Gene expression data analysis
    • Brazma, A. and Vilo, J. 2000. Gene expression data analysis. FEBS Lett. 480:17-24.
    • (2000) FEBS Lett , vol.480 , pp. 17-24
    • Brazma, A.1    Vilo, J.2
  • 6
    • 0032413411 scopus 로고    scopus 로고
    • Predicting gene regulatory elements in silico on a genomic scale
    • Brazma, A., Jonassen, I., Vilo, J., and Ukkonen, E. 1998. Predicting gene regulatory elements in silico on a genomic scale. Genome Res. 8:1202-1215.
    • (1998) Genome Res , vol.8 , pp. 1202-1215
    • Brazma, A.1    Jonassen, I.2    Vilo, J.3    Ukkonen, E.4
  • 7
    • 4344571581 scopus 로고    scopus 로고
    • Rank products: A simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments
    • Breitling, R., Armengaud, P., Amtmann, A., and Herzyk, P. 2004. Rank products: A simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments. FEBS Lett. 573:83-92.
    • (2004) FEBS Lett , vol.573 , pp. 83-92
    • Breitling, R.1    Armengaud, P.2    Amtmann, A.3    Herzyk, P.4
  • 9
    • 84936916896 scopus 로고
    • Robust locally weighted regression and smoothing scatterplots
    • Cleveland, W.S. 1979. Robust locally weighted regression and smoothing scatterplots. J. Am. Stat. Assoc. 74:829-836.
    • (1979) J. Am. Stat. Assoc , vol.74 , pp. 829-836
    • Cleveland, W.S.1
  • 10
    • 0037276175 scopus 로고    scopus 로고
    • Statistical tests for differential expression in cDNA microarray experiments
    • Cui, X. and Churchill, G.A. 2003. Statistical tests for differential expression in cDNA microarray experiments. Genome Biol. 4:210.
    • (2003) Genome Biol , vol.4 , pp. 210
    • Cui, X.1    Churchill, G.A.2
  • 11
    • 0035021690 scopus 로고    scopus 로고
    • J-Express: Exploring gene expression data using Java
    • Dysvik, B. and Jonassen, I. 2001. J-Express: Exploring gene expression data using Java. Bioinformatics 17:369-370.
    • (2001) Bioinformatics , vol.17 , pp. 369-370
    • Dysvik, B.1    Jonassen, I.2
  • 20
    • 0033204902 scopus 로고    scopus 로고
    • An empirical comparison of four initialization methods for the k-means algorithm
    • Peña, J.M., Lozano, J.A., and Larrañaga, P. 1999. An empirical comparison of four initialization methods for the k-means algorithm. Pattern Recogn. Lett. 20:1027-1040.
    • (1999) Pattern Recogn. Lett , vol.20 , pp. 1027-1040
    • Peña, J.M.1    Lozano, J.A.2    Larrañaga, P.3
  • 21
    • 0035375137 scopus 로고    scopus 로고
    • Computational analysis of microarray data
    • Quackenbush, J. 2001. Computational analysis of microarray data. Nat. Rev. Genet. 2:418-427.
    • (2001) Nat. Rev. Genet , vol.2 , pp. 418-427
    • Quackenbush, J.1
  • 22
    • 0033657261 scopus 로고    scopus 로고
    • Principal components analysis to summarize microarray experiments: Application to sporulation time series
    • Stanford Medical Informatics, Stanford University, Calif
    • Raychaudhuri, S.J., Stuart, M., and Altman, R.B. 2000. Principal components analysis to summarize microarray experiments: Application to sporulation time series. Pacific Symposium on Biocomputing, 455-466. Stanford Medical Informatics, Stanford University, Calif.
    • (2000) Pacific Symposium on Biocomputing , pp. 455-466
    • Raychaudhuri, S.J.1    Stuart, M.2    Altman, R.B.3
  • 26
    • 0042863923 scopus 로고    scopus 로고
    • Analysis of gene expression data using self-organizing maps
    • Tornen, P., Kolehmainen, M., Wong, G., and Castren, E. 1999. Analysis of gene expression data using self-organizing maps. FEBS. Lett. 451:142-146.
    • (1999) FEBS. Lett , vol.451 , pp. 142-146
    • Tornen, P.1    Kolehmainen, M.2    Wong, G.3    Castren, E.4
  • 28
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher, V.G., Tibshirani, R., and Chu, G. 2001. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. U.S.A. 98:5116-5121.
    • (2001) Proc. Natl. Acad. Sci. U.S.A , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.