-
1
-
-
0032733124
-
-
Walter, F.; Vincens, Q.; Westhof, E. Curr. Opin. Chem. Biol. 1999, 3, 694-704.
-
(1999)
Curr. Opin. Chem. Biol
, vol.3
, pp. 694-704
-
-
Walter, F.1
Vincens, Q.2
Westhof, E.3
-
2
-
-
0002751916
-
-
Davies, J.; Gorini, L.; Davis, B. D. Mol. Pharmacol. 1965, 1, 93-106.
-
(1965)
Mol. Pharmacol
, vol.1
, pp. 93-106
-
-
Davies, J.1
Gorini, L.2
Davis, B.D.3
-
5
-
-
0033543589
-
-
Yoshizawa, S.; Fourmy, D.; Puglisi, J. D. Science 1999, 285, 1722-1725.
-
(1999)
Science
, vol.285
, pp. 1722-1725
-
-
Yoshizawa, S.1
Fourmy, D.2
Puglisi, J.D.3
-
6
-
-
0033961143
-
-
Pape, T.; Wintermeyer, W.; Rodnina, M. V. Nat. Struct. Biol. 2000, 7, 104-107.
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 104-107
-
-
Pape, T.1
Wintermeyer, W.2
Rodnina, M.V.3
-
7
-
-
0034699519
-
-
Carter, A. P.; Clemons, M. W.; Brodersen, D. E.; Morgan-Warren, R. J.; Wimberly, B. T.; Ramakrishnan, V. Nature 2000, 407, 340-348.
-
(2000)
Nature
, vol.407
, pp. 340-348
-
-
Carter, A.P.1
Clemons, M.W.2
Brodersen, D.E.3
Morgan-Warren, R.J.4
Wimberly, B.T.5
Ramakrishnan, V.6
-
9
-
-
0037424612
-
-
Kaul, M.; Barbieri, C. M.; Kerrigan, J. E.; Pilch, D. S. J. Mol. Biol. 2003, 326, 1373-1387.
-
(2003)
J. Mol. Biol
, vol.326
, pp. 1373-1387
-
-
Kaul, M.1
Barbieri, C.M.2
Kerrigan, J.E.3
Pilch, D.S.4
-
12
-
-
33748568807
-
-
Yang, G.; Trylska, J.; Tor, Y.; McCammon, J. A. J. Med. Chem. 2006, 49, 5478-5490.
-
(2006)
J. Med. Chem
, vol.49
, pp. 5478-5490
-
-
Yang, G.1
Trylska, J.2
Tor, Y.3
McCammon, J.A.4
-
14
-
-
0029812492
-
-
Miyaguchi, H.; Narita, H.; Sakamoto, K.; Yokoyama, S. Nucleic Acids Res. 1996, 24, 3700-3706.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 3700-3706
-
-
Miyaguchi, H.1
Narita, H.2
Sakamoto, K.3
Yokoyama, S.4
-
15
-
-
1842388479
-
-
Recht, M. I.; Fourmy, D.; Blanchard, S. C.; Dahlquist, K. D.; Puglisi, J. D. J. Mol. Biol. 1996, 262, 421-436.
-
(1996)
J. Mol. Biol
, vol.262
, pp. 421-436
-
-
Recht, M.I.1
Fourmy, D.2
Blanchard, S.C.3
Dahlquist, K.D.4
Puglisi, J.D.5
-
16
-
-
0032568576
-
-
Blanchard, S. C.; Fourmy, D.; Eason, R. G.; Puglisi, J. D. Biochemistry 1998, 37, 7716-7724.
-
(1998)
Biochemistry
, vol.37
, pp. 7716-7724
-
-
Blanchard, S.C.1
Fourmy, D.2
Eason, R.G.3
Puglisi, J.D.4
-
20
-
-
0037184536
-
-
Ogle, J. M.; Murphy, F. V.; Tarry, M. J.; Ramakrishnan, V. Cell 2002, 111, 721-732.
-
(2002)
Cell
, vol.111
, pp. 721-732
-
-
Ogle, J.M.1
Murphy, F.V.2
Tarry, M.J.3
Ramakrishnan, V.4
-
21
-
-
0038403669
-
-
Ogle, J. M.; Carter, A. P.; Ramakrishnan, V. Trends Biochem. Sci. 2003, 28, 259-266.
-
(2003)
Trends Biochem. Sci
, vol.28
, pp. 259-266
-
-
Ogle, J.M.1
Carter, A.P.2
Ramakrishnan, V.3
-
22
-
-
0035805229
-
-
Ogle, J. M.; Brodersen, D. E.; Clemons, W. M., Jr.; Tarry, M. J.; Carter, A. P.; Ramakrishnan, V. Science 2001, 292, 897-902.
-
(2001)
Science
, vol.292
, pp. 897-902
-
-
Ogle, J.M.1
Brodersen, D.E.2
Clemons Jr., W.M.3
Tarry, M.J.4
Carter, A.P.5
Ramakrishnan, V.6
-
24
-
-
4544340867
-
-
Shandrick, S.; Zhao, Q.; Han, Q.; Ayida, B. K.; Takahashi, M.; Winters, G. C.; Simonsen, K. B.; Vourloumis, D.; Hermann, T. Angew. Chem., Int. Ed. Engl. 2004, 43, 3177-3182.
-
(2004)
Angew. Chem., Int. Ed. Engl
, vol.43
, pp. 3177-3182
-
-
Shandrick, S.1
Zhao, Q.2
Han, Q.3
Ayida, B.K.4
Takahashi, M.5
Winters, G.C.6
Simonsen, K.B.7
Vourloumis, D.8
Hermann, T.9
-
25
-
-
0033621114
-
-
Griffey, R. H.; Hofstadler, S. A.; Sannes-Lowery, K. A.; Ecker, D. J.; Crooke, S. T. Proc. Nati. Sci. U.S.A 1999, 96, 10129-10133.
-
(1999)
Proc. Nati. Sci. U.S.A
, vol.96
, pp. 10129-10133
-
-
Griffey, R.H.1
Hofstadler, S.A.2
Sannes-Lowery, K.A.3
Ecker, D.J.4
Crooke, S.T.5
-
26
-
-
0034738144
-
-
Sucheck, S. J.; Wong, A. L.; Koeller, K. M.; Boehr, D. D.; Draker, K.; Sears, P.; Wright, G. D.; Wong, C.-H. J. Am. Chem. Soc. 2000, 122, 5230-5231.
-
(2000)
J. Am. Chem. Soc
, vol.122
, pp. 5230-5231
-
-
Sucheck, S.J.1
Wong, A.L.2
Koeller, K.M.3
Boehr, D.D.4
Draker, K.5
Sears, P.6
Wright, G.D.7
Wong, C.-H.8
-
28
-
-
0032126750
-
-
Wong, C.-H.; Hendrix, M.; Priestley, E. S.; Greenberg, W. A. Chem. Biol. 1998, 5, 397-406.
-
(1998)
Chem. Biol
, vol.5
, pp. 397-406
-
-
Wong, C.-H.1
Hendrix, M.2
Priestley, E.S.3
Greenberg, W.A.4
-
29
-
-
0041335577
-
-
Pilch, D. S.; Kaul, M.; Barbieri, C. M.; Kerrigan, J. E. Biopolymers 2003, 70, 58-79.
-
(2003)
Biopolymers
, vol.70
, pp. 58-79
-
-
Pilch, D.S.1
Kaul, M.2
Barbieri, C.M.3
Kerrigan, J.E.4
-
30
-
-
12544252978
-
-
Paster, P.; Hobbie, S.; Brull, C.; Corti, N.; Vassela, A.; Westhof, E.; Bottger, E. C. J. Mol. Biol. 2005, 346, 467-475.
-
(2005)
J. Mol. Biol
, vol.346
, pp. 467-475
-
-
Paster, P.1
Hobbie, S.2
Brull, C.3
Corti, N.4
Vassela, A.5
Westhof, E.6
Bottger, E.C.7
-
31
-
-
33747880625
-
-
Vaiana, A. C.; Westhof, E.; Auffinger, P. Biochimie 2006, 88, 1061-1073.
-
(2006)
Biochimie
, vol.88
, pp. 1061-1073
-
-
Vaiana, A.C.1
Westhof, E.2
Auffinger, P.3
-
35
-
-
0027386759
-
-
Tan, R. C.; Truong, T. T.; McCammon, J. A.; Sussman, J. L. Biochemistry 1993, 32, 401-403.
-
(1993)
Biochemistry
, vol.32
, pp. 401-403
-
-
Tan, R.C.1
Truong, T.T.2
McCammon, J.A.3
Sussman, J.L.4
-
36
-
-
0032568645
-
-
Wade, R. C.; Gabdoulline, R. R.; Lüdemann, S. K.; Lounnas, V. Proc. Natl. Acad. Sci. U.S.A 2007, 95, 5942-5949.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A
, vol.95
, pp. 5942-5949
-
-
Wade, R.C.1
Gabdoulline, R.R.2
Lüdemann, S.K.3
Lounnas, V.4
-
38
-
-
33646005543
-
-
Speer, A.; Dammer, Ch.; Gabdoulline, R. R.; Wade, R. C. Biophys. J. 2006, 90, 1913-1924.
-
(2006)
Biophys. J
, vol.90
, pp. 1913-1924
-
-
Speer, A.1
Dammer, C.2
Gabdoulline, R.R.3
Wade, R.C.4
-
40
-
-
0023779259
-
-
Gilson, M. K.; Honig, B. Proteins: Struct., Func., Genet. 1988, 4, 7-18.
-
(1988)
Proteins: Struct., Func., Genet
, vol.4
, pp. 7-18
-
-
Gilson, M.K.1
Honig, B.2
-
41
-
-
0000281387
-
-
Zhou, H. J. Chem. Phys. 1994, 100, 3152-3162.
-
(1994)
J. Chem. Phys
, vol.100
, pp. 3152-3162
-
-
Zhou, H.1
-
43
-
-
36549102274
-
-
Northrup, S. H.; Allison, S. A.; McCammon, J. A. J. Chem. Phys. 1984, 80, 1517-1524.
-
(1984)
J. Chem. Phys
, vol.80
, pp. 1517-1524
-
-
Northrup, S.H.1
Allison, S.A.2
McCammon, J.A.3
-
46
-
-
85050521214
-
Biological applications of electrostatic calculations and Brownian dynamics simulations
-
Lipkowitz, K. B, Boyd, D. B, Eds, VCH Publishers: New York
-
Madura, J. D.; Davis, M. E.; Gilson, M. K.; Wade, R. C.; Luty, B. A.; McCammon, J. A. Biological applications of electrostatic calculations and Brownian dynamics simulations. In Reviews in Computational Chemistry; Lipkowitz, K. B., Boyd, D. B., Eds.; VCH Publishers: New York, 1994; Vol. 5, pp 229-267..
-
(1994)
Reviews in Computational Chemistry
, vol.5
, pp. 229-267
-
-
Madura, J.D.1
Davis, M.E.2
Gilson, M.K.3
Wade, R.C.4
Luty, B.A.5
McCammon, J.A.6
-
47
-
-
0029665693
-
-
Antosiewicz, J.; McCammon, J. A.; Gilson, M. K. Biochemistry 1996, 35, 7819-7833.
-
(1996)
Biochemistry
, vol.35
, pp. 7819-7833
-
-
Antosiewicz, J.1
McCammon, J.A.2
Gilson, M.K.3
-
48
-
-
0031670370
-
-
van Vlijmen, H. H. T.; Schaefer, M.; Karplus, M. Proteins: Struct., Func., Genet. 1998, 33, 145-148.
-
(1998)
Proteins: Struct., Func., Genet
, vol.33
, pp. 145-148
-
-
van Vlijmen, H.H.T.1
Schaefer, M.2
Karplus, M.3
-
49
-
-
0028305457
-
-
Antosiewicz, J.; McCammon, J. A.; Gilson, M. K. J. Mol. Biol. 1994, 238, 415-436.
-
(1994)
J. Mol. Biol
, vol.238
, pp. 415-436
-
-
Antosiewicz, J.1
McCammon, J.A.2
Gilson, M.K.3
-
52
-
-
0000486193
-
-
Holst, M.; Baker, N.; Wang, E. J. Comput. Chem. 2000, 21, 1319-1342.
-
(2000)
J. Comput. Chem
, vol.21
, pp. 1319-1342
-
-
Holst, M.1
Baker, N.2
Wang, E.3
-
53
-
-
0026124585
-
-
Davis, M. E.; Madura, J. D.; Luty, B. A.; McCammon, J. A. Comput. Phys. Commun. 1991, 62, 187-197.
-
(1991)
Comput. Phys. Commun
, vol.62
, pp. 187-197
-
-
Davis, M.E.1
Madura, J.D.2
Luty, B.A.3
McCammon, J.A.4
-
57
-
-
1242274330
-
-
Draper, D. E. RNA 2004, 10, 335-343.
-
(2004)
RNA
, vol.10
, pp. 335-343
-
-
Draper, D.E.1
-
59
-
-
0029011701
-
-
Cornell, W. D.; Cieplak, P.; Bayly, C I.; Gould, I. R.; Merz, K. M. J.; Ferguson, D. M.; Spellmayer, D. C.; Fox, T.; Caldwell, J. W.; Kollman, P. A. J. Am. Chem. Soc. 1995, 117, 5179-5197.
-
(1995)
J. Am. Chem. Soc
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.J.5
Ferguson, D.M.6
Spellmayer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
60
-
-
58149106481
-
-
Insight II, version 2000; Accelrys: San Diego, CA, 2000
-
Insight II, version 2000; Accelrys: San Diego, CA, 2000.
-
-
-
-
61
-
-
0001041959
-
-
Jakalian, A.; Busch, B. L.; Jack, D. B.; Bayly, C I. J. Comput. Chem. 2000, 21, 132-146.
-
(2000)
J. Comput. Chem
, vol.21
, pp. 132-146
-
-
Jakalian, A.1
Busch, B.L.2
Jack, D.B.3
Bayly, C.I.4
-
62
-
-
7744246534
-
-
Barbieri, C. M.; Srinivasan, A. R.; Pilch, D. S. J. Am. Chem. Soc. 2004, 126, 14380-14388.
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 14380-14388
-
-
Barbieri, C.M.1
Srinivasan, A.R.2
Pilch, D.S.3
-
65
-
-
0033622118
-
-
de Graaf, R. A.; van Kranenburg, A.; Nicolay, K. Biophys. J. 2000, 78, 1657-1664.
-
(2000)
Biophys. J
, vol.78
, pp. 1657-1664
-
-
de Graaf, R.A.1
van Kranenburg, A.2
Nicolay, K.3
-
68
-
-
84988087911
-
-
Gilson, M. K.; Sharp, K. A.; Honig, B.H.J. Comput. Chem. 1988, 9, 327-335.
-
(1988)
J. Comput. Chem
, vol.9
, pp. 327-335
-
-
Gilson, M.K.1
Sharp, K.A.2
Honig, B.H.3
-
71
-
-
0034039797
-
-
Sheinerman, S. H.; Norel, R.; Honig, B. Curr. Opin. Struct. Biol. 2000, 10, 153-159.
-
(2000)
Curr. Opin. Struct. Biol
, vol.10
, pp. 153-159
-
-
Sheinerman, S.H.1
Norel, R.2
Honig, B.3
-
72
-
-
33845282579
-
-
Quinn, P. M. Chem. Rev. 1987, 87, 955-979.
-
(1987)
Chem. Rev
, vol.87
, pp. 955-979
-
-
Quinn, P.M.1
-
74
-
-
0027219545
-
-
Escobar, L.; Root, M. J.; MacKinnon, R. Biochemstry 1993, 32, 6982-6987.
-
(1993)
Biochemstry
, vol.32
, pp. 6982-6987
-
-
Escobar, L.1
Root, M.J.2
MacKinnon, R.3
-
75
-
-
0028866770
-
-
Wallis, R.; Moore, G. R.; James, R.; Kleanthous, C. Biochemistry 1995, 34, 13743-13750.
-
(1995)
Biochemistry
, vol.34
, pp. 13743-13750
-
-
Wallis, R.1
Moore, G.R.2
James, R.3
Kleanthous, C.4
-
76
-
-
0031012271
-
-
Wendt, H.; Leder, L.; Harma, H.; Jelesarov, I.; Baici, A.; Bosshard, H. R. Biochemistry 1997, 36, 204-213.
-
(1997)
Biochemistry
, vol.36
, pp. 204-213
-
-
Wendt, H.1
Leder, L.2
Harma, H.3
Jelesarov, I.4
Baici, A.5
Bosshard, H.R.6
-
77
-
-
0030828982
-
-
Radie, Z.; Kirchhoff, P. D.; Quinn, D. M.; McCammon, J. A.; Taylor, P. J. Biol. Chem. 1997, 272, 23265-23277.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 23265-23277
-
-
Radie, Z.1
Kirchhoff, P.D.2
Quinn, D.M.3
McCammon, J.A.4
Taylor, P.5
-
78
-
-
27244458194
-
-
François, B.; Russel, R. J. M.; Murray, J. B.; Aboul-ela, F.; Masquida, B.; Vicens, Q.; Westhof, E. Nucl. Acid Res. 2005, 33, 5677-5690.
-
(2005)
Nucl. Acid Res
, vol.33
, pp. 5677-5690
-
-
François, B.1
Russel, R.J.M.2
Murray, J.B.3
Aboul-ela, F.4
Masquida, B.5
Vicens, Q.6
Westhof, E.7
|