Ontology based integration of distributed and heterogeneous data sources in ACGT

HEALTHINF 2008 - 1st International Conference on Health Informatics, Proceedings

Volumn 1, Issue , 2008, Pages 301-306

  Martín, Luis ^a   Anguita, Alberto ^a   Maojo, Víctor ^a   Bonsma, Erwin ^b   Bucur, Anca ^b   Vrijnsen, Jeroen ^b   Brochhausen, Mathias ^c   Cocos, Christian ^c   Stenzhorn, Holger ^c   Tsiknakis, Manolis ^d   Doerr, Martin ^d   Kondylakis, Haridimos ^d  

^a UNIVERSIDAD POLITÉCNICA DE MADRID   (Spain)

^b PHILIPS RESEARCH LABORATORIES   (Netherlands)

^c SAARLAND UNIVERSITY   (Germany)

^d INSTITUTE OF COMPUTER SCIENCE   (Greece)

Author keywords

Ontologies; Ontology based biomedical database integration; Post genomic clinical trials; Semantic mediation; Service oriented architectures

Indexed keywords

DATABASE SYSTEMS; DISTRIBUTED COMPUTER SYSTEMS; INFORMATION SERVICES; INFORMATION THEORY; INTEGRATION; QUERY LANGUAGES; SEMANTICS;

CANCER.; CORE TOOLS; DATA ACCESS LAYERS; DO-MAINS; EUROPEANS; HETEROGENEOUS DATA SOURCES; IMAGE DATABASES; INFRA STRUCTURES; POST-GENOMIC CLINICAL TRIALS; SEMANTIC MEDIATION; SERVICE ORIENTED ARCHITECTURES;

ONTOLOGY;

EID: 57349165407     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (24)

1. Abiteboul S., Duschka O., 1998. Complexity of answering queries using materialized views. In Proc. of the 17th ACMSIGACT SIGMOD SIGART Symp. on Principles of Database Systems (PODS'98), pages 254-265.
2. Antonioletti, M., et al. 2005. The Design and Implementation of Grid Database Services in OGSA-DAI- In: Concurrency and Computation: Practice and Experience, Volume 17, Issue 2-4, Pages 357-376.
3. BFO, The Basic Formal Ontology. Available at: http://www.ifomis.uni- saarland.de/bfo [13 oct 2007]
4. Bizer, C., Seaborne, A. 2004. D2RQ - Treating Non-RDF Databases as Virtual RDF Graphs. In: Proc. of the 3rd International Semantic Web Conference (ISWC2004), Hiroshima, Japan. Poster presentation.
5. caCORE: A Common Framework for Cancer Data Management. Available at: http://ncicb.nci.nih.gov/infrastructure/cacore-overvie w [13 oct 2007]
6. Cali, A., De Giacomo, G., Lenzerini, M., 2001. Models for information integration: Turning local-as-view into global-as-view. In: Proc. of Int. Workshop on Foundations of Models for Information Integration (10th Workshop in the series Foundations of Models and Languages for Data and Objects).
7. Ceusters W, Smith B, Kumar A, Dhaen C. 2003. Mistakes in Medical Ontologies: Where Do They Come From and How Can They Be Detected?, in: Pisanelli DM (ed.): Ontologies in Medicine: Proceedings of the Workshop on Medical Ontologies, Rome, October 2003. IOS Press, Amsterdam.
8. FMA, The Foundational Model of Anatomy. Available at: http://fme.biostr.washington.edu:8089/FME/index.htm 1 [13 oct 2007]
9. GALEN, Common Reference Model. Available at: http://www.opengalen.org [13 oct 2007]
10. GO, Gene Ontology project. Available at: http://www.geneontology.org [13 oct 2007]
11. Grenon, P., Smith, B., Goldberg, L., "Biodynamic Ontology. 2004. Applying BFO in the Biomedical Domain," in: Ontologies in Medicine, D. M. Pisanelli, Ed., Amsterdam: IOS Press, pp. 20-38.
12. HL7, Reference Information Model. Available at: http://www.h17.org/ Library/data- model/RIM/modelpage-mem.htm. [13 oct 2007]
13. Kimball R., 1996. The Data Warehouse Toolkit: Practical Techniques for Building Dimensional Data Warehouses, John Wiley.
14. Lindberg C. The Unified Medical Language System (UMLS) of the National Library of Medicine. Journal of the American Medical Record Association 1990; 61(5):40-2.
15. NCI Enterprise Vocabulary Services. Available at: http://www.nci.nih.gov/ cancerinfo/terminologyresourc es [13 oct 2007]
16. OBO Foundry ontologies. Available at: http://obofoundry.org [13 oct 2007]
17. Protégé, The Ontology Editor and Knowledge Acquisition System. Available at: http://protege.stanford.edu [13 oct 2007]
18. RO, OBO Relation Ontology. Available at: http://www.obofoundry.org/ro [13 oct 2007]
19. Sheth A. P., Larson J. A., 1990. Federated Database Systems for Managing Distributed, Heterogeneous, and Autonomous Databases, ACM Computing Surveys, 22(3): pp. 183-236.
20. Smith, B, Ceusters, W. HL7 RIM: An Incoherent Standard, Stud Health Technol. Inform. 2006; 124: 133-38
21. SNOMED Clinical Terms Core Content. Available at: http://www.snomed.org/ snomedct/coreterms.html [13 oct 2007]
22. SPARQL Query Language for RDF. Available at: http://www.w3.org/TR/rdf- sparql-query/ [13 oct 2007]
23. Ullman J.D., 1997. Information integration using logical views. In Proc. of the 6th Int. Conf. on Database Theory (ICDT'97), volume 1186 of Lecture Notes in Computer Science, pages 19-40. Springer-Verlag.
24. Wiederhold G., 1992. Mediators in the Architecture of Future Information Systems, IEEE Computer, 25(3): pp. 38-49.