Molecular identification of bacteria and bioaccumulation of rare earth elements of Chavara

Journal of Pure and Applied Microbiology

Volumn 2, Issue 2, 2008, Pages 405-414

  Challaraj Emmanuel, E S ^a   Anandkumar, B ^a   Maruthamuthu, S ^b  

^a Sourashtra College   (India)

^b CENTRAL ELECTROCHEMICAL RESEARCH INSTITUTE   (India)

Author keywords

16S rRNA sequencing; FTIR; Rare earth elements

Indexed keywords

LANTHANIDE; RNA 16S;

AGRICULTURE; ARTICLE; BACILLUS; BACILLUS CEREUS; BACTERIAL GENETICS; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; BIOACCUMULATION; BIOFILM; CONTROLLED STUDY; EXIGUOBACTERIUM; INDIA; INFRARED SPECTROSCOPY; LYSINIBACILLUS; MICROBIAL MORPHOLOGY; MOLECULAR GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PSEUDOMONAS; RNA SEQUENCE; SEDIMENT; SEQUENCE ANALYSIS; SOIL MICROFLORA;

BACILLUS CEREUS; BACILLUS SP.; BACTERIA (MICROORGANISMS); EXIGUOBACTERIUM SP.; PSEUDOMONAS SP.;

EID: 57049185772     PISSN: 09737510     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (23)

1. Greenwood, N.N.,and A. Earnshan, Chemistry of the elements Pergamon Presss, London 1984.
2. Tyler G., Vertical distribution of major, minor and rare elements in a Haplic Podzol, Geoderma, 2004: 119: 277-290.
3. Stanley, Jr., and J.K., Byrne, R.H., The influence of solutin chemistry on REE uptake by ulva lactucal L in seawater. Geochim. Cosmochim. Acta, 1990; 54: 2847-2858.
4. Wawer, C., and Muyzer, G., Genetic diversity of Desulfo Vibrio spp. In Environmental samples analysed by denaturing gradient gel electrophoresis of (NiFe) hydrogenase gene fragments, J Applied and Environmental microbiology, 1995; 65: 2203-2210.
5. Holt, J. G., N. R. Kreig., P. H. A. Sneath., J. T. Staley., and S.T. Williams., Bergey's Manual of Determinative Bacteriology 9th edition. Williams and Wilkins, Maryland, USA 1994.
6. Altschul, Stephen, F., Thomas L., Madden., Alejandro, A., Schäffer, Jinghui Zhang, Zheng Zhang., Webb Miller, and David, J., Lipman., "Gapped BLAST and PSI-BLAST: a new generation of Protein database search programs". Nucleic Acids Res. 1997: 25: 3389-3402.
7. Bayer, M.H., Lanthanide accumulation in the periplasmic space of E.coli B. J Bacteriol. 1991; 173(1): 141-149.
8. Andres. Y., Thonand. G., Boualam, M, and Mergeay. M., Factors influencing the biosorption of gadolinium by microorganism and its mobilization from sand. Appl. Microbiol Biol, 2003a: 54: 262-267.
9. Andres, Y., Texier. A.C., and Cloiree., Rare earth elements removal by microbial biosorption: A review. Environmental Technology, 2003b: 23: 1367-1375.
10. Diatloff, E., Smith, F.W., and Asher, C.J., Maha., Rare-earth elements and plant growth. 2. Responses of corn and mungbean to low concentration of lanthanum in dilute. continuously flowing nutrient solutions. J. Plant Nutrition, 1995: 18: 1977-1989.
11. Hirano, and Suzuki, T., Exposure. Metabolism, and toxicity of rare earth and related compounds, J. Enviromental, 1996; 104: 85-95.
12. DeSouza, M J., Phosphate solubilizing bacteria around Indian peninsulaen. J. Marine Sci, 2000; 29: 48-51.
13. Bucznski, B.W., Kory, M.M., Steiner, R.P., Kittinger, T.A., and Ramsier, R.D., Bacterial adhesion to Zirconium surfaces. Colloids and Surfaces, B: Biointerfaces, 2003: 30: 167-175.
14. Ozaki, T., Yoshinori Suzuki, Takuya Nankawa, Takahiro Yoshida, Toshihiko, Ohmiki Takaumi Kimura, and Arokiasamy, J.Francis. Interaction of rare earth elements with bacteria and organic legends, 2005; 3: 1191-1195.
15. Merroun, M.L., Ben, K., Chekroun, J.M., Arias, M.T., and Gonzakz-Munoz, Lanthanum fixation by Myxococcus Xanthus: Cellular location and extra cellular polysaccharide observation. Chemosphere, 2003; 52: 113-120.
16. Kazy, K., and Susanta, K., Lanthanum biosorption by a Pseudomonas sp: equilibrium studies and chemical characterization, J. Indus. Micr and Biotech, 2006; 33: 773-783.
17. Zhao, J., and Zhu, W. H., Promotion of indole alkaloid production in Catharanthus roseus cell cultures by earth elements, J. Biotechnol, 2004; 22: 825-828.
18. Ichihashi. H., and Morita, H., REEs in naturally grown plants in relation to their variation in soils, Environ Pollut, 1992; 76: 157-62.
19. Zhang, S.Z., and Shang. X.Q., Speciation of rare earth elements in soil and accumulation by wheat with rare earth fertilizer application. Environ. Polu., 2001; 112: 395-405.
20. Higgins D., Thompson J., Gibson T. Thompson J.D., Higgins D.G., and Gibson T.J., CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting. position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 1994; 22: 4673-4680.
21. Saitou, N. and Nei, M., The Neighbor-Joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution. 1987; 4: 406-425.
22. Choi, J.H., Jung, H.Y., Kim, H.S. and Cho, H.G., PhyloDraw: a phylogenetic tree drawing system. Bioinformatics., 2000; 16: 1056-1058.
23. Teske, A., Hinrichs, K. U., Edgcomb, V., Gomez, A. V., Kysela, D., Sylva, S.P., Sogin, M. L. and Jannasch, H. W., Microbial Diversity of hydrothermal sediments in the Guaymas Basin: evidence for anaerobic methanotrophic communities, Appl. Environ. Microbiol., 2002; 68: 1994-2007.