-
1
-
-
33749332762
-
Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA
-
Andersen, C.B., Ballut, L., Johansen, J.S., Chamieh, H., Nielsen, K.H., Oliveira, C.L., Pedersen, J.S., Seraphin, B., Le Hir, H., and Andersen, G.R. 2006. Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA. Science 313: 1968-1972.
-
(2006)
Science
, vol.313
, pp. 1968-1972
-
-
Andersen, C.B.1
Ballut, L.2
Johansen, J.S.3
Chamieh, H.4
Nielsen, K.H.5
Oliveira, C.L.6
Pedersen, J.S.7
Seraphin, B.8
Le Hir, H.9
Andersen, G.R.10
-
2
-
-
27144445082
-
The exon junction core complex is locked onto RNA by inhibition of eIF4AIII ATPase activity
-
Ballut, L., Marchadier, B., Baguet, A., Tomasetto, C., Seraphin, B., and Le Hir, H. 2005. The exon junction core complex is locked onto RNA by inhibition of eIF4AIII ATPase activity. Nat. Struct. Mol. Biol. 12: 861-869.
-
(2005)
Nat. Struct. Mol. Biol
, vol.12
, pp. 861-869
-
-
Ballut, L.1
Marchadier, B.2
Baguet, A.3
Tomasetto, C.4
Seraphin, B.5
Le Hir, H.6
-
3
-
-
0035031386
-
The stem-loop binding protein forms a highly stable and specific complex with the 3′ stem-loop of histone mRNAs
-
Battle, D.J. and Doudna, J.A. 2001. The stem-loop binding protein forms a highly stable and specific complex with the 3′ stem-loop of histone mRNAs. RNA 7: 123-132.
-
(2001)
RNA
, vol.7
, pp. 123-132
-
-
Battle, D.J.1
Doudna, J.A.2
-
4
-
-
33747182255
-
The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA
-
Bono, F., Ebert, J., Lorentzen, E., and Conti, E. 2006. The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA. Cell 126: 713-725.
-
(2006)
Cell
, vol.126
, pp. 713-725
-
-
Bono, F.1
Ebert, J.2
Lorentzen, E.3
Conti, E.4
-
5
-
-
34247197937
-
The nonsense-mediated decay RNA surveillance pathway
-
Chang, Y.F., Imam, J.S., and Wilkinson, M.F. 2007. The nonsense-mediated decay RNA surveillance pathway. Annu. Rev. Biochem. 76: 51-74.
-
(2007)
Annu. Rev. Biochem
, vol.76
, pp. 51-74
-
-
Chang, Y.F.1
Imam, J.S.2
Wilkinson, M.F.3
-
6
-
-
33344473656
-
The DEAD-box protein family of RNA helicases
-
Cordin, O., Banroques, J., Tanner, N.K., and Linder, P. 2006. The DEAD-box protein family of RNA helicases. Gene 367: 17-37.
-
(2006)
Gene
, vol.367
, pp. 17-37
-
-
Cordin, O.1
Banroques, J.2
Tanner, N.K.3
Linder, P.4
-
7
-
-
33745860086
-
Protein composition and electron microscopy structure of affinity-purified human spliceosomal B complexes isolated under physiological conditions
-
Deckert, J., Hartmuth, K., Boehringer, D., Behzadnia, N., Will, C.L., Kastner, B., Stark, H., Urlaub, H., and Luhrmann, R. 2006. Protein composition and electron microscopy structure of affinity-purified human spliceosomal B complexes isolated under physiological conditions. Mol. Cell. Biol. 26: 5528-5543.
-
(2006)
Mol. Cell. Biol
, vol.26
, pp. 5528-5543
-
-
Deckert, J.1
Hartmuth, K.2
Boehringer, D.3
Behzadnia, N.4
Will, C.L.5
Kastner, B.6
Stark, H.7
Urlaub, H.8
Luhrmann, R.9
-
8
-
-
36849049323
-
PYM binds the cytoplasmic exon-junction complex and ribosomes to enhance translation of spliced mRNAs
-
Diem, M.D., Chan, C.C., Younis, I., and Dreyfuss, G. 2007. PYM binds the cytoplasmic exon-junction complex and ribosomes to enhance translation of spliced mRNAs. Nat. Struct. Mol. Biol. 14: 1173-1179.
-
(2007)
Nat. Struct. Mol. Biol
, vol.14
, pp. 1173-1179
-
-
Diem, M.D.1
Chan, C.C.2
Younis, I.3
Dreyfuss, G.4
-
9
-
-
34447092677
-
The EJC factor eIF4AIII modulates synaptic strength and neuronal protein expression
-
Giorgi, C., Yeo, G.W., Stone, M.E., Katz, D.B., Burge, C., Turrigiano, G., and Moore, M.J. 2007. The EJC factor eIF4AIII modulates synaptic strength and neuronal protein expression. Cell 130: 179-191.
-
(2007)
Cell
, vol.130
, pp. 179-191
-
-
Giorgi, C.1
Yeo, G.W.2
Stone, M.E.3
Katz, D.B.4
Burge, C.5
Turrigiano, G.6
Moore, M.J.7
-
10
-
-
26944493460
-
RNA splicing promotes translation and RNA surveillance
-
Gudikote, J.P., Imam, J.S., Garcia, R.F., and Wilkinson, M.F. 2005. RNA splicing promotes translation and RNA surveillance. Nat. Struct. Mol. Biol. 12: 801-809.
-
(2005)
Nat. Struct. Mol. Biol
, vol.12
, pp. 801-809
-
-
Gudikote, J.P.1
Imam, J.S.2
Garcia, R.F.3
Wilkinson, M.F.4
-
11
-
-
2342439151
-
Splicing of oskar RNA in the nucleus is coupled to its cytoplasmic localization
-
Hachet, O. and Ephrussi, A. 2004. Splicing of oskar RNA in the nucleus is coupled to its cytoplasmic localization. Nature 428: 959-963.
-
(2004)
Nature
, vol.428
, pp. 959-963
-
-
Hachet, O.1
Ephrussi, A.2
-
12
-
-
11144244811
-
Splicing of U12-type introns deposits an exon junction complex competent to induce nonsense-mediated mRNA decay
-
Hirose, T., Shu, M.D., and Steitz, J.A. 2004. Splicing of U12-type introns deposits an exon junction complex competent to induce nonsense-mediated mRNA decay. Proc. Natl. Acad. Sci. 101: 17976-17981.
-
(2004)
Proc. Natl. Acad. Sci
, vol.101
, pp. 17976-17981
-
-
Hirose, T.1
Shu, M.D.2
Steitz, J.A.3
-
13
-
-
34547927647
-
Introns play an essential role in splicing-dependent formation of the exon junction complex
-
Ideue, T., Sasaki, Y.T., Hagiwara, M., and Hirose, T. 2007. Introns play an essential role in splicing-dependent formation of the exon junction complex. Genes & Dev. 21: 1993-1998.
-
(2007)
Genes & Dev
, vol.21
, pp. 1993-1998
-
-
Ideue, T.1
Sasaki, Y.T.2
Hagiwara, M.3
Hirose, T.4
-
14
-
-
1342325392
-
A simple whole cell lysate system for in vitro splicing reveals a stepwise assembly of the exon-exon junction complex
-
Kataoka, N. and Dreyfuss, G. 2004. A simple whole cell lysate system for in vitro splicing reveals a stepwise assembly of the exon-exon junction complex. J. Biol. Chem. 279: 7009-7013.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 7009-7013
-
-
Kataoka, N.1
Dreyfuss, G.2
-
15
-
-
0035890258
-
Magoh, a human homolog of Drosophila mago nashi protein, is a component of the splicing-dependent exon-exon junction complex
-
Kataoka, N., Diem, M.D., Kim, V.N., Yong, J., and Dreyfuss, G. 2001. Magoh, a human homolog of Drosophila mago nashi protein, is a component of the splicing-dependent exon-exon junction complex. EMBO J. 20: 6424-6433.
-
(2001)
EMBO J
, vol.20
, pp. 6424-6433
-
-
Kataoka, N.1
Diem, M.D.2
Kim, V.N.3
Yong, J.4
Dreyfuss, G.5
-
16
-
-
39149089317
-
Structural insights into the exon junction complex
-
Le Hir, H. and Andersen, G.R. 2008. Structural insights into the exon junction complex. Curr. Opin. Struct. Biol. 18: 112-119.
-
(2008)
Curr. Opin. Struct. Biol
, vol.18
, pp. 112-119
-
-
Le Hir, H.1
Andersen, G.R.2
-
17
-
-
41949135532
-
EJCs at the heart of translational control
-
Le Hir, H. and Seraphin, B. 2008. EJCs at the heart of translational control. Cell 133: 213-216.
-
(2008)
Cell
, vol.133
, pp. 213-216
-
-
Le Hir, H.1
Seraphin, B.2
-
18
-
-
0034672093
-
The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions
-
Le Hir, H., Izaurralde, E., Maquat, L.E., and Moore, M.J. 2000. The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions. EMBO J. 19: 6860-6869.
-
(2000)
EMBO J
, vol.19
, pp. 6860-6869
-
-
Le Hir, H.1
Izaurralde, E.2
Maquat, L.E.3
Moore, M.J.4
-
19
-
-
0035801373
-
The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay
-
Le Hir, H., Gatfield, D., Izaurralde, E., and Moore, M.J. 2001. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay. EMBO J. 20: 4987-4997.
-
(2001)
EMBO J
, vol.20
, pp. 4987-4997
-
-
Le Hir, H.1
Gatfield, D.2
Izaurralde, E.3
Moore, M.J.4
-
20
-
-
0037398519
-
How introns influence and enhance eukaryotic gene expression
-
Le Hir, H., Nott, A., and Moore, M.J. 2003. How introns influence and enhance eukaryotic gene expression. Trends Biochem. Sci. 28: 215-220.
-
(2003)
Trends Biochem. Sci
, vol.28
, pp. 215-220
-
-
Le Hir, H.1
Nott, A.2
Moore, M.J.3
-
21
-
-
19344366251
-
Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells
-
Lejeune, F. and Maquat, L.E. 2005. Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells. Curr. Opin. Cell Biol. 17: 309-315.
-
(2005)
Curr. Opin. Cell Biol
, vol.17
, pp. 309-315
-
-
Lejeune, F.1
Maquat, L.E.2
-
22
-
-
0032696240
-
Eukaryotic translation initiation factor 4AIII (eIF4AIII) is functionally distinct from eIF4AI and eIF4AII
-
Li, Q., Imataka, H., Morino, S., Rogers Jr., G.W., Richter-Cook, N.J., Merrick, W.C., and Sonenberg, N. 1999. Eukaryotic translation initiation factor 4AIII (eIF4AIII) is functionally distinct from eIF4AI and eIF4AII. Mol. Cell. Biol. 19: 7336-7346.
-
(1999)
Mol. Cell. Biol
, vol.19
, pp. 7336-7346
-
-
Li, Q.1
Imataka, H.2
Morino, S.3
Rogers Jr., G.W.4
Richter-Cook, N.J.5
Merrick, W.C.6
Sonenberg, N.7
-
23
-
-
0035823247
-
Communication of the position of exon-exon junctions to the mRNA surveillance machinery by the protein RNPS1
-
Lykke-Andersen, J., Shu, M.D., and Steitz, J.A. 2001. Communication of the position of exon-exon junctions to the mRNA surveillance machinery by the protein RNPS1. Science 293: 1836-1839.
-
(2001)
Science
, vol.293
, pp. 1836-1839
-
-
Lykke-Andersen, J.1
Shu, M.D.2
Steitz, J.A.3
-
24
-
-
41949101770
-
SKAR links pre-mRNA splicing to mTOR/S6K1-mediated enhanced translation efficiency of spliced mRNAs
-
Ma, X.M., Yoon, S.O., Richardson, C.J., Julich, K., and Blenis, J. 2008. SKAR links pre-mRNA splicing to mTOR/S6K1-mediated enhanced translation efficiency of spliced mRNAs. Cell 133: 303-313.
-
(2008)
Cell
, vol.133
, pp. 303-313
-
-
Ma, X.M.1
Yoon, S.O.2
Richardson, C.J.3
Julich, K.4
Blenis, J.5
-
25
-
-
33845902802
-
Protein composition of human mRNPs spliced in vitro and differential requirements for mRNP protein recruitment
-
Merz, C., Urlaub, H., Will, C.L., and Luhrmann, R. 2007. Protein composition of human mRNPs spliced in vitro and differential requirements for mRNP protein recruitment. RNA 13: 116-128.
-
(2007)
RNA
, vol.13
, pp. 116-128
-
-
Merz, C.1
Urlaub, H.2
Will, C.L.3
Luhrmann, R.4
-
26
-
-
0023651444
-
Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
-
Milligan, J.F., Groebe, D.R., Witherell, G.W., and Uhlenbeck, O.C. 1987. Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Res. 15: 8783-8798.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 8783-8798
-
-
Milligan, J.F.1
Groebe, D.R.2
Witherell, G.W.3
Uhlenbeck, O.C.4
-
27
-
-
0026680843
-
Site-specific modification of premRNA: The 2′-hydroxyl groups at the splice sites
-
Moore, M.J. and Sharp, P.A. 1992. Site-specific modification of premRNA: The 2′-hydroxyl groups at the splice sites. Science 256: 992-997.
-
(1992)
Science
, vol.256
, pp. 992-997
-
-
Moore, M.J.1
Sharp, P.A.2
-
28
-
-
34547194577
-
MLN51 stimulates the RNA-helicase activity of eIF4AIII
-
doi: 10.1371/journal. pone.0000303
-
Noble, C.G. and Song, H. 2007. MLN51 stimulates the RNA-helicase activity of eIF4AIII. PLoS One 2: e303. doi: 10.1371/journal. pone.0000303.
-
(2007)
PLoS One
, vol.2
-
-
Noble, C.G.1
Song, H.2
-
29
-
-
0942268832
-
Splicing enhances translation in mammalian cells: An additional function of the exon junction complex
-
Nott, A., Le Hir, H., and Moore, M.J. 2004. Splicing enhances translation in mammalian cells: An additional function of the exon junction complex. Genes & Dev. 18: 210-222.
-
(2004)
Genes & Dev
, vol.18
, pp. 210-222
-
-
Nott, A.1
Le Hir, H.2
Moore, M.J.3
-
30
-
-
1442354190
-
An eIF4AIII-containing complex required for mRNA localization and nonsense-mediated mRNA decay
-
Palacios, I.M., Gatfield, D., St Johnston, D., and Izaurralde, E. 2004. An eIF4AIII-containing complex required for mRNA localization and nonsense-mediated mRNA decay. Nature 427: 753-757.
-
(2004)
Nature
, vol.427
, pp. 753-757
-
-
Palacios, I.M.1
Gatfield, D.2
St Johnston, D.3
Izaurralde, E.4
-
31
-
-
0036826885
-
5′ exon interactions within the human spliceosome establish a framework for exon junction complex structure and assembly
-
Reichert, V.L., Le Hir, H., Jurica, M.S., and Moore, M.J. 2002. 5′ exon interactions within the human spliceosome establish a framework for exon junction complex structure and assembly. Genes & Dev. 16: 2778-2791.
-
(2002)
Genes & Dev
, vol.16
, pp. 2778-2791
-
-
Reichert, V.L.1
Le Hir, H.2
Jurica, M.S.3
Moore, M.J.4
-
32
-
-
0032254282
-
Toeprinting assays. Mapping by blocks to reverse transcriptase primer extension
-
Ringquist, S. and Gold, L. 1998. Toeprinting assays. Mapping by blocks to reverse transcriptase primer extension. Methods Mol. Biol. 77: 283-295.
-
(1998)
Methods Mol. Biol
, vol.77
, pp. 283-295
-
-
Ringquist, S.1
Gold, L.2
-
33
-
-
1842577707
-
eIF4AIII binds spliced mRNA in the exon junction complex and is essential for nonsense-mediated decay
-
Shibuya, T., Tange, T.O., Sonenberg, N., and Moore, M.J. 2004. eIF4AIII binds spliced mRNA in the exon junction complex and is essential for nonsense-mediated decay. Nat. Struct. Mol. Biol. 11: 346-351.
-
(2004)
Nat. Struct. Mol. Biol
, vol.11
, pp. 346-351
-
-
Shibuya, T.1
Tange, T.O.2
Sonenberg, N.3
Moore, M.J.4
-
34
-
-
33344464450
-
Mutational analysis of human eIF4AIII identifies regions necessary for exon junction complex formation and nonsense-mediated mRNA decay
-
Shibuya, T., Tange, T.O., Stroupe, M.E., and Moore, M.J. 2006. Mutational analysis of human eIF4AIII identifies regions necessary for exon junction complex formation and nonsense-mediated mRNA decay. RNA 12: 360-374.
-
(2006)
RNA
, vol.12
, pp. 360-374
-
-
Shibuya, T.1
Tange, T.O.2
Stroupe, M.E.3
Moore, M.J.4
-
35
-
-
0036773686
-
Exclusive interaction of the 15.5 kDa protein with the terminal box C/D motif of a methylation guide snoRNP
-
Szewczak, L.B., DeGregorio, S.J., Strobel, S.A., and Steitz, J.A. 2002. Exclusive interaction of the 15.5 kDa protein with the terminal box C/D motif of a methylation guide snoRNP. Chem. Biol. 9: 1095-1107.
-
(2002)
Chem. Biol
, vol.9
, pp. 1095-1107
-
-
Szewczak, L.B.1
DeGregorio, S.J.2
Strobel, S.A.3
Steitz, J.A.4
-
36
-
-
2342540912
-
The ever-increasing complexities of the exon junction complex
-
Tange, T.O., Nott, A., and Moore, M.J. 2004. The ever-increasing complexities of the exon junction complex. Curr. Opin. Cell Biol. 16: 279-284.
-
(2004)
Curr. Opin. Cell Biol
, vol.16
, pp. 279-284
-
-
Tange, T.O.1
Nott, A.2
Moore, M.J.3
-
37
-
-
28344456363
-
Biochemical analysis of the EJC reveals two new factors and a stable tetrameric protein core
-
Tange, T.O., Shibuya, T., Jurica, M.S., and Moore, M.J. 2005. Biochemical analysis of the EJC reveals two new factors and a stable tetrameric protein core. RNA 11: 1869-1883.
-
(2005)
RNA
, vol.11
, pp. 1869-1883
-
-
Tange, T.O.1
Shibuya, T.2
Jurica, M.S.3
Moore, M.J.4
-
38
-
-
0028072388
-
SR proteins can compensate for the loss of U1 snRNP functions in vitro
-
Tarn, W.Y. and Steitz, J.A. 1994. SR proteins can compensate for the loss of U1 snRNP functions in vitro. Genes & Dev. 8: 2704-2717.
-
(1994)
Genes & Dev
, vol.8
, pp. 2704-2717
-
-
Tarn, W.Y.1
Steitz, J.A.2
-
39
-
-
0141706348
-
Exon junction complexes mediate the enhancing effect of splicing on mRNA expression
-
Wiegand, H.L., Lu, S., and Cullen, B.R. 2003. Exon junction complexes mediate the enhancing effect of splicing on mRNA expression. Proc. Natl. Acad. Sci. 100: 11327-11332.
-
(2003)
Proc. Natl. Acad. Sci
, vol.100
, pp. 11327-11332
-
-
Wiegand, H.L.1
Lu, S.2
Cullen, B.R.3
-
40
-
-
0032189145
-
Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing
-
Yu, Y.T., Shu, M.D., and Steitz, J.A. 1998. Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing. EMBO J. 17: 5783-5795.
-
(1998)
EMBO J
, vol.17
, pp. 5783-5795
-
-
Yu, Y.T.1
Shu, M.D.2
Steitz, J.A.3
-
41
-
-
34547413345
-
Splicing remodels messenger ribonucleoprotein architecture via eIF4A3-dependent and -independent recruitment of exon junction complex components
-
Zhang, Z. and Krainer, A.R. 2007. Splicing remodels messenger ribonucleoprotein architecture via eIF4A3-dependent and -independent recruitment of exon junction complex components. Proc. Natl. Acad. Sci. 104: 11574-11579.
-
(2007)
Proc. Natl. Acad. Sci
, vol.104
, pp. 11574-11579
-
-
Zhang, Z.1
Krainer, A.R.2
-
42
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31: 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|