Progress in updating the European Radiobiology Archives

International Journal of Radiation Biology

Volumn 84, Issue 11, 2008, Pages 930-936

  Tapio, S ^a,b   Schofield, P N ^c   Adelmann, C ^a   Atkinson, M J ^b   Bard, J L B ^d   Bijwaard, H ^e   Birschwilks, M ^a   Dubus, P ^f   Fiette, L ^g   Gerber, G ^h   Gruenberger, M ^c   Quintanilla Martinez, L ^b   Rozell, B ⁱ   Saigusa, S ^j   Warren, M ^c   Watson, C R ^k   Grosche, B ^a  

^a BUNDESAMT FÜR STRAHLENSCHUTZ   (Germany)

^b INSTITUTE OF EPIDEMIOLOGY   (Germany)

^c UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^d UNIVERSITY OF EDINBURGH   (United Kingdom)

^e NATIONAL INSTITUTE FOR PUBLIC HEALTH AND THE ENVIRONMENT   (Netherlands)

^f UNIVERSITÉ DE BORDEAUX   (France)

^g INSTITUT PASTEUR   (France)

^h Karolinska University Hospital ^*

ⁱ KAROLINSKA UNIVERSITY HOSPITAL   (Sweden)

^j NATIONAL INSTITUTE OF RADIOLOGICAL SCIENCES   (Japan)

^k WASHINGTON STATE UNIVERSITY   (United States)

more..

Author keywords

Animal archives; Database; Ontology; Pathology coding; Radiation biology; Tissue banks

Indexed keywords

ACCURACY; ANALYTICAL ERROR; ANIMAL EXPERIMENT; ARTICLE; CONTROLLED STUDY; DATA BASE; HISTOPATHOLOGY; HUMAN; INFORMATION CENTER; INFORMATION RETRIEVAL; MOUSE; NOMENCLATURE; NONHUMAN; PATHOLOGY; PRIORITY JOURNAL; RADIOBIOLOGY; STANDARDIZATION; VALIDATION STUDY;

ANIMALIA; RODENTIA;

EID: 57049136137     PISSN: 09553002     EISSN: 13623095     Source Type: Journal    
DOI: 10.1080/09553000802460214     Document Type: Article

References (28)

1. Bard J. 2003. Ontologies: Formalising biological knowledge for bioinformatics. Bioassays 25(5):501-506.
2. Bard JBL, Rhee Seung Y. 2004. Ontologies in biology: design, applications and future challenges. Nature Reviews Genetics 5(3):213-222.
3. Bannasch P. 1994. Pathology of neoplasia and preneoplasia in rodents. Stuttgart, New York: Schattauer.
4. Bijwaard H. 2006. Mechanistic models of bone cancer induction by radium and plutonium in animals compared to humans. Radiation Protection Dosimetry 122(1-4):340-344.
5. Bijwaard H, Dekkers F. 2007. Bone cancer risk of (239)pu in humans derived from animal models. Radiation Research 168(5):582-592.
6. Bouffler SD, Bridges BA, Cooper DN, Dubrova Y, McMillan TJ, Thacker J, Wright EG, Waters R. 2006. Assessing radiation-associated mutational risk to the germline: Repetitive DNA sequences as mutational targets and biomarkers. Radiation Research 165(3):249-268.
7. Brooks AL. 2003. Developing a scientific basis for radiation risk estimates: goal of the DOE Low Dose Research Program. Health Physics 85(1):85-93.
8. Eppig JT, Blake JA, Bult CJ, Richardson JE, Kadin JA, Ringwald M. 2007. Mouse genome informatics (MGI) resources for pathology and toxicology. Toxicologic Pathology 35(3):456-457.
9. Gerber GB, Watson CR, Sugahara T, Okada S. 1996. International Radiobiology Archives of long-term animal studies I. Description of participating institutions and studies. DOE/RL: Report 96-72.
10. Gerber GB, Wick RR. 2004. The European Radiobiology Archives (ERA), present state and future developments. Radiation Protective Dosimetry 112(4):529-530.
11. Gerber GB, Wick RR, Kellerer AM, Hopewell JW, Di Majo V, Dudoignon N, Gossner W, Stather J. 2006. The European Radiobiology Archives (ERA) - content, structure and use illustrated by an example. Radiation Protective Dosimetry 118(1):70-77.
12. Gerber GB, Wick RR, Watson CR, Gossner W, Kellerer AM. 1999. International radiobiology archives of long-term animal studies: Structure, possible uses and potential extension. Radiation Environmental Biophysics 38(2):75-79.
13. Gilbert MT, Haselkorn T, Bunce M, Sanchez JJ, Lucas SB, Jewell LD, Van Marck E, Worobey M. 2007. The isolation of nucleic acids from fixed, paraffin-embedded tissues - which methods are useful when? Public Library of Science ONE 2(6):e537.
14. Hayamizu TF, Mangan M, Corradi JP, Kadin JA, Ringwald M. 2005. The Adult Mouse Anatomical Dictionary: A tool for annotating and integrating data. Genome Biology 6(3):R29.
15. Heidenreich WF, Muller WA, Paretzke HG, Rosemann M. 2005. Bone cancer risk in mice exposed to 224Ra: Protraction effects from promotion. Radiation Environmental Biophysics 44(1):61-67.
16. Immich H. 1968. Klinischer Diagnosenschlüssel. Stuttgart: Schattauer.
17. Isola J, DeVries S, Chu L, Ghazvini S, Waldman F. 1994. Analysis of changes in DNA sequence copy number by comparative genomic hybridization in archival paraffin-embedded tumor samples. American Journal of Pathology 145(6):1301-1308.
18. Kogan SC, Ward JM, Anver MR, Berman JJ, Brayton C, Cardiff RD, Carter JS, de Coronado S, Downing JR, Fredrickson TN, Haines DC, Harris AW, Harris NL, Hiai H, Jaffe ES, MacLennan IC, Pandolfi PP, Pattengale PK, Perkins AS, Simpson RM, Tuttle MS, Wong JF, Morse HC 3rd. 2002. Bethesda proposals for classification of nonlymphoid hematopoietic neoplasms in mice. Blood 100(1):238-245.
19. Morse HC 3rd, Anver MR, Fredrickson TN, Haines DC, Harris AW, Harris NL, Jaffe ES, Kogan SC, MacLennan IC, Pattengale PK, Ward JM. 2002. Bethesda proposals for classification of lymphoid neoplasms in mice. Blood 100(1):246-258.
20. Palotay JL. 1983. SNOMED-SNOVET; an information system for comparitive medicine. Medical Informatics (London) 8:17-21.
21. Sankaranarayanan K, Wassom JS. 2005. Ionizing radiation and genetic risks XIV. Potential research directions in the post-genome era based on knowledge of repair of radiation-induced DNA double-strand breaks in mammalian somatic cells and the origin of deletions associated with human genomic disorders. Mutation Research 578(1-2):333-370.
22. Schofield PN, Bard JB, Boniver J, Covelli V, Delvenne P, Ellender M, Engstrom W, Goessner W, Gruenberger M, Hoefler H, Hopewell JW, Mancuso M, Mothersill C, Quintanilla-Martinez L, Rozell B, Sariola H, Sundberg JP, Ward A. 2004a. Pathbase: A new reference resource and database for laboratory mouse pathology. Radiation Protective Dosimetry 112(4):525-528.
23. Schofield PN, Bard JB, Booth C, Boniver J, Covelli V, Delvenne P, Ellender M, Engstrom W, Goessner W, Gruenberger M, Hoefler H, Hopewell J, Mancuso M, Mothersill C, Potten CS, Quintanilla-Fend L, Rozell B, Sariola H, Sundberg JP, Ward A. 2004b. Pathbase: A database of mutant mouse pathology. Nucleic Acids Research 32(Database issue):D512-515.
24. Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ, OBI Consortium, Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Shah N, Whetzel P, Lewis S. 2007. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nature Biotechnology 25(11):1251-1255.
25. Stein L. 2002. Creating a bioinformatics nation. Nature 417(6885):119-120.
26. Tapio S, Atkinson MJ. 2007. Molecular information obtained from radiobiological tissue archives: achievements of the past and visions of the future. Radiation Environmental Biophysics 47(2):183-187.
27. van Kaick G, Dalheimer A, Hornik S, Kaul A, Liebermann D, Luhrs H, Spiethoff A, Wegener K, Wesch H. 1999. The German thorotrast study: Recent results and assessment of risks. Radiation Research 152(6 Suppl.):S64-71.
28. World Health Organization (WHO). 1992. Manual for International Classification of Diseases and Health Related Problems. Geneva: WHO.