메뉴 건너뛰기




Volumn 93, Issue 1, 2009, Pages 5-9

Estimation and testing of gene-environment interactions in family-based association studies

Author keywords

Conditional likelihood; Imputation; Missing data

Indexed keywords

ARTICLE; COMPUTER SIMULATION; FAMILY; GENE ENVIRONMENT INTERACTION; GENE INTERACTION; GENOTYPE; HUMAN; PEDIGREE; PRIORITY JOURNAL;

EID: 57049134665     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2008.05.002     Document Type: Article
Times cited : (16)

References (28)
  • 1
    • 0036155238 scopus 로고    scopus 로고
    • A perspective on epistasis: limits of models displaying no main effect
    • Culverhouse R., Suarez B.K., Lin J., and Reich T. A perspective on epistasis: limits of models displaying no main effect. Am. J. Hum. Genet. 70 (2002) 461-471
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 461-471
    • Culverhouse, R.1    Suarez, B.K.2    Lin, J.3    Reich, T.4
  • 2
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    • Wellcome Trust Case Control Consortium. Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 447 (2007) 661-678
    • (2007) Nature , vol.447 , pp. 661-678
    • Wellcome Trust Case Control Consortium1
  • 4
    • 33847059098 scopus 로고    scopus 로고
    • Exploiting gene-environment interaction to detect genetic associations
    • Kraft P., Yen Y.C., Stram D.O., Morrison J., and Gauderman W.J. Exploiting gene-environment interaction to detect genetic associations. Hum. Hered. 63 (2007) 111-119
    • (2007) Hum. Hered. , vol.63 , pp. 111-119
    • Kraft, P.1    Yen, Y.C.2    Stram, D.O.3    Morrison, J.4    Gauderman, W.J.5
  • 5
    • 0025959790 scopus 로고
    • Effect modification and the limits of biological inference from epidemiologic data
    • Thompson W.D. Effect modification and the limits of biological inference from epidemiologic data. J. Clin. Epidemiol. 44 (1991) 221-232
    • (1991) J. Clin. Epidemiol. , vol.44 , pp. 221-232
    • Thompson, W.D.1
  • 6
    • 0031827525 scopus 로고    scopus 로고
    • The language of gene interaction
    • Phillips P.C. The language of gene interaction. Genetics 149 (1998) 1167-1171
    • (1998) Genetics , vol.149 , pp. 1167-1171
    • Phillips, P.C.1
  • 7
    • 0036797562 scopus 로고    scopus 로고
    • Epistasis: what it means, what it doesn't mean, and statistical methods to detect it in humans
    • Cordell H.J. Epistasis: what it means, what it doesn't mean, and statistical methods to detect it in humans. Hum. Mol. Genet. 11 (2002) 2463-2468
    • (2002) Hum. Mol. Genet. , vol.11 , pp. 2463-2468
    • Cordell, H.J.1
  • 8
    • 41649094148 scopus 로고    scopus 로고
    • Likelihood-based association analysis for nuclear families and unrelated subjects with missing genotype data
    • Dudbridge F. Likelihood-based association analysis for nuclear families and unrelated subjects with missing genotype data. Hum. Hered 66 (2008) 87-98
    • (2008) Hum. Hered , vol.66 , pp. 87-98
    • Dudbridge, F.1
  • 9
    • 0031949066 scopus 로고    scopus 로고
    • A log-linear approach to case-parent-triad data: assessing effects of disease genes that act either directly or through maternal effects and that may be subject to parental imprinting
    • Weinberg C.R., Wilcox A.J., and Lie R.T. A log-linear approach to case-parent-triad data: assessing effects of disease genes that act either directly or through maternal effects and that may be subject to parental imprinting. Am. J. Hum. Genet. 62 (1998) 969-978
    • (1998) Am. J. Hum. Genet. , vol.62 , pp. 969-978
    • Weinberg, C.R.1    Wilcox, A.J.2    Lie, R.T.3
  • 10
    • 0033362236 scopus 로고    scopus 로고
    • Methods for detection of parent-of-origin effects in genetic studies of case-parents triads
    • Weinberg C.R. Methods for detection of parent-of-origin effects in genetic studies of case-parents triads. Am. J. Hum. Genet. 65 (1999) 229-235
    • (1999) Am. J. Hum. Genet. , vol.65 , pp. 229-235
    • Weinberg, C.R.1
  • 11
    • 0037224761 scopus 로고    scopus 로고
    • Detecting genotype combinations that increase risk for disease: maternal-fetal genotype incompatibility test
    • Sinsheimer J.S., Palmer C.G., and Woodward J.A. Detecting genotype combinations that increase risk for disease: maternal-fetal genotype incompatibility test. Genet. Epidemiol. 24 (2003) 1-13
    • (2003) Genet. Epidemiol. , vol.24 , pp. 1-13
    • Sinsheimer, J.S.1    Palmer, C.G.2    Woodward, J.A.3
  • 12
    • 1842483890 scopus 로고    scopus 로고
    • Case/pseudocontrol analysis in genetic association studies: a unified framework for detection of genotype and haplotype associations, gene-gene and gene-environment interactions and parent-of-origin effects
    • Cordell H.J., Barratt B.J., and Clayton D.G. Case/pseudocontrol analysis in genetic association studies: a unified framework for detection of genotype and haplotype associations, gene-gene and gene-environment interactions and parent-of-origin effects. Genet. Epidemiol. 26 (2004) 167-185
    • (2004) Genet. Epidemiol. , vol.26 , pp. 167-185
    • Cordell, H.J.1    Barratt, B.J.2    Clayton, D.G.3
  • 13
    • 0027377799 scopus 로고
    • Transmission test for linkage disequilibrium: the insulin gene region and insulin-dependent diabetes mellitus
    • Spielman R.S., McGinnis R.E., and Ewens W.J. Transmission test for linkage disequilibrium: the insulin gene region and insulin-dependent diabetes mellitus. Am. J. Hum. Genet. 52 (1993) 506-516
    • (1993) Am. J. Hum. Genet. , vol.52 , pp. 506-516
    • Spielman, R.S.1    McGinnis, R.E.2    Ewens, W.J.3
  • 14
    • 0036137030 scopus 로고    scopus 로고
    • A unified stepwise regression procedure for evaluating the relative effects of polymorphisms within a gene using case/control or family data: application to HLA in type 1 diabetes
    • Cordell H.J., and Clayton D.G. A unified stepwise regression procedure for evaluating the relative effects of polymorphisms within a gene using case/control or family data: application to HLA in type 1 diabetes. Am. J. Hum. Genet. 70 (2002) 124-141
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 124-141
    • Cordell, H.J.1    Clayton, D.G.2
  • 15
    • 0027367005 scopus 로고
    • Genotype relative risks: methods for design and analysis of candidate-gene association studies
    • Schaid D.J., and Sommer S.S. Genotype relative risks: methods for design and analysis of candidate-gene association studies. Am. J. Hum. Genet. 53 (1993) 1114-1126
    • (1993) Am. J. Hum. Genet. , vol.53 , pp. 1114-1126
    • Schaid, D.J.1    Sommer, S.S.2
  • 16
    • 0029956803 scopus 로고    scopus 로고
    • General score tests for associations of genetic markers with disease using cases and their parents
    • Schaid D.J. General score tests for associations of genetic markers with disease using cases and their parents. Genet. Epidemiol. 13 (1996) 423-449
    • (1996) Genet. Epidemiol. , vol.13 , pp. 423-449
    • Schaid, D.J.1
  • 17
    • 0033814928 scopus 로고    scopus 로고
    • Implementing a unified approach to family based tests of association
    • Laird N.M., Horvath S., and Xu X. Implementing a unified approach to family based tests of association. Genet. Epidemiol. Suppl. 19 (2000) S36-S42
    • (2000) Genet. Epidemiol. Suppl. , vol.19
    • Laird, N.M.1    Horvath, S.2    Xu, X.3
  • 18
    • 0034054165 scopus 로고    scopus 로고
    • A unified approach to adjusting association tests for population admixture with arbitrary pedigree structure and arbitrary missing marker information
    • Rabinowitz D., and Laird N.M. A unified approach to adjusting association tests for population admixture with arbitrary pedigree structure and arbitrary missing marker information. Hum. Hered. 50 (2000) 211-223
    • (2000) Hum. Hered. , vol.50 , pp. 211-223
    • Rabinowitz, D.1    Laird, N.M.2
  • 19
    • 33947400250 scopus 로고    scopus 로고
    • Dealing with missing data in family-based association studies: a multiple imputation approach
    • Croiseau P., Genin E., and Cordell H.J. Dealing with missing data in family-based association studies: a multiple imputation approach. Hum. Hered. 63 (2007) 229-238
    • (2007) Hum. Hered. , vol.63 , pp. 229-238
    • Croiseau, P.1    Genin, E.2    Cordell, H.J.3
  • 20
    • 0033652887 scopus 로고    scopus 로고
    • Family-based tests of association in the presence of linkage
    • Lake S.L., Blacker D.B., and Laird N.M. Family-based tests of association in the presence of linkage. Am. J. Hum. Genet. 67 (2000) 1515-1525
    • (2000) Am. J. Hum. Genet. , vol.67 , pp. 1515-1525
    • Lake, S.L.1    Blacker, D.B.2    Laird, N.M.3
  • 21
    • 33947676810 scopus 로고    scopus 로고
    • Inference on haplotype/disease association using parent-affected-child data: the projection conditional on parental haplotypes method
    • Allen A.S., and Satten G.A. Inference on haplotype/disease association using parent-affected-child data: the projection conditional on parental haplotypes method. Genet. Epidemiol. 31 (2007) 211-223
    • (2007) Genet. Epidemiol. , vol.31 , pp. 211-223
    • Allen, A.S.1    Satten, G.A.2
  • 23
    • 0000265107 scopus 로고
    • Large sample significance levels from multiply imputed data using moment-based statistics and an f reference distribution)
    • Li K.H., Raghunathan T.E., and Rubin D.B. Large sample significance levels from multiply imputed data using moment-based statistics and an f reference distribution). J. Am. Stat. Assoc. 86 (1987) 1065-1073
    • (1987) J. Am. Stat. Assoc. , vol.86 , pp. 1065-1073
    • Li, K.H.1    Raghunathan, T.E.2    Rubin, D.B.3
  • 24
    • 57049112244 scopus 로고    scopus 로고
    • D.L. Nicolae, X.-L. Meng, A. Kong, Quantifying the fraction of missing information for hypothesis testing in statistical and genetic studies, Stat. Sci. in press.
    • D.L. Nicolae, X.-L. Meng, A. Kong, Quantifying the fraction of missing information for hypothesis testing in statistical and genetic studies, Stat. Sci. in press.
  • 25
    • 84950758368 scopus 로고
    • The calculation of posterior distributions by data augmentation (with discussion)
    • Tanner M.A., and Wong W.H. The calculation of posterior distributions by data augmentation (with discussion). J. Am. Stat. Assoc. 82 (1987) 528-550
    • (1987) J. Am. Stat. Assoc. , vol.82 , pp. 528-550
    • Tanner, M.A.1    Wong, W.H.2
  • 26
    • 33645465693 scopus 로고    scopus 로고
    • Estimation and testing of genotype and haplotype effects in case-control studies: comparison of weighted regression and multiple imputation procedures
    • Cordell H.J. Estimation and testing of genotype and haplotype effects in case-control studies: comparison of weighted regression and multiple imputation procedures. Genet. Epidemiol. 30 (2006) 259-275
    • (2006) Genet. Epidemiol. , vol.30 , pp. 259-275
    • Cordell, H.J.1
  • 27
    • 57049179693 scopus 로고    scopus 로고
    • D.G. Clayton, Genassoc: Stata module for analysis of genetic association studies. March 2008, Available at http://www-gene.cimr.cam.ac.uk/clayton/software/stata/README.txt.
    • D.G. Clayton, Genassoc: Stata module for analysis of genetic association studies. March 2008, Available at http://www-gene.cimr.cam.ac.uk/clayton/software/stata/README.txt.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.