Microcalorimetry: A response to challenges in modern biotechnology

Microbial Biotechnology

Volumn 1, Issue 2, 2008, Pages 126-136

  Krell, Tino ^a  

^a CSIC   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; BIOTECHNOLOGICAL PROCEDURES; BIOTECHNOLOGY; CHEMICAL ANALYSIS; DIFFERENTIAL SCANNING CALORIMETRY; DRUG BIOAVAILABILITY; DRUG INDUSTRY; DRUG RESEARCH; DRUG RESISTANCE; ENZYME KINETICS; ISOTHERMAL TITRATION CALORIMETRY; MEDICAL RESEARCH; MICROCALORIMETRY; PROTEIN STABILITY; REVIEW;

BACTERIA; BACTERIAL PROTEINS; BIOTECHNOLOGY; CALORIMETRY; THERMODYNAMICS;

EID: 56949106817     PISSN: 17517907     EISSN: 17517915     Source Type: Journal    
DOI: 10.1111/j.1751-7915.2007.00013.x     Document Type: Review

References (53)

1. Anderson, W.A., Hedges, N.D., Jones, M.V., and Cole, M.B. (1991) Thermal inactivation of Listeria monocytogenes studied by differential scanning calorimetry. J Gen Microbiol 137: 1419-1424.
2. Bennett, W.S.J., and Steitz, T.A. (1978) Glucose induced conformational changes in yeast hexokinase. Proc Natl Acad Sci USA 75: 4848-4852.
3. Bianconi, M.L. (2003) Calorimetric determination of thermodynamic parameters of reaction reveals different enthalpic compensations of the yeast hexokinase isoenzymes. J Biol Chem 278: 18709-18713.
4. Busch, A., Lacal, J., Martos, A., Ramos, J.L., and Krell, T. (2007) Bacterial sensor kinase TodS interacts with agonistic and antagonistic signals. Proc Natl Acad Sci USA 104: 13774-13779.
5. Catanzano, F., Gambuti, G., Graziano, G., and Barone, G. (1997) Interaction with D-glucose and thermal denaturation of yeast Hexokinase B: a DSC study. J Biochem 121: 568-577.
6. Cavazzana-Calvo, M., Hacein-Bey, S., Basile, G., Gross, F., Yvon, E., Nusbaum, P., et al. (2000) Gene therapy of human severe combined immunodeficiency (SCID)-X1 disease. Science 288: 669-672.
7. Chi, E.Y., Krishnan, S., Randolph, T.W., and Carpenter, J.F. (2003) Physical stability of proteins in aqueous solution: mechanism and driving forces in nonnative protein aggregation. Pharm Res 20: 1325-1336.
8. Demarest, S.J., Chen, G., Kimmel, B.E., Gustafson, D., Wu, J., Salbato, J., et al. (2006) Engineering stability into Escherichia coli secreted Fabs leads to increased functional expression. Protein Eng Des Sel 19: 325-336.
9. Epand, R.M., and Epand, R.F. (2002) Thermal denaturation of influenza virus and its relationship to membrane fusion. Biochem J 365: 841-848.
10. Fonseca, F., Marin, M., and Morris, G.J. (2006) Stabilization of frozen Lactobacillus delbrueckii subsp. bulgaricus in glycerol suspensions: freezing kinetics and storage temperature effects. Appl Environ Microbiol 72: 6474-6482.
11. Freire, E., van Osdol, W.W., Mayorga, O.L., and Sanchez-Ruiz, J.M. (1990) Calorimetrically determined dynamics of complex unfolding transitions in proteins. Annu Rev Biophys Biophys Chem 19: 159-188.
12. Gao, X., Kim, K.S., and Liu, D. (2007) Nonviral gene delivery: what we know and what is next. AAPS J 9: E92-E104.
13. Garber, E., and Demarest, S.J. (2007) A broad range of Fab stabilities within a host of therapeutic IgGs. Biochem Biophys Res Commun 355: 751-757.
14. Gramaglia, D., Conway, B.R., Kett, V.L., Malcolm, R.K., and Batchelor, H.K. (2005) High speed DSC (hyper-DSC) as a tool to measure the solubility of a drug within a solid or semi-solid matrix. Int J Pharm 301: 1-5.
15. Hawe, A., and Frieß, W. (2006) Impact of freezing procedure and annealing on the physico-chemical properties and the formation of mannitol hydrate in mannitol-sucrose-NaCl formulations. Eur J Pharm Biopharm 64: 316-325.
16. Holdgate, G.A. (2001) Making cool drugs hot: isothermal titration calorimetry as a tool to study binding energetics. Biotechniques 31: 164-184.
17. Ibarra-Molero, B., and Sanchez-Ruiz, J.M. (2006) Differential Scanning Calorimetry of proteins: an overview and some recent developments. In Advanced Techniques in Biophysics. Arrondo, J.L.R., and Alonso, A. (eds). Amsterdam, the Netherlands: Elsvier, pp. 27-48.
18. Kreilgaard, L., Frokjaer, S., Flink, J.M., Randolph, T.W., and Carpenter, J.F. (1999) Effects of additives on the stability of Humicola lanuginosa lipase during freeze-drying and storage in the dried solid. J Pharm Sci 88: 281-290.
19. Krell, T., Chevalier, M., and Lissolo, L. (2002) Affinity purification of Transferrin Binding Protein B under nondenaturing conditions. Prot Expr Purif 24: 323-328.
20. Krell, T., Renauld-Mongénie, G., Nicolai, M.C., Chevalier, M., Bérard, Y., Oakhill, J., et al. (2003) Insight into the structure and function of the transferrin receptor from Neisseria meningitidis using microcalorimetric techniques. J Biol Chem 278: 14712-14722.
21. Krell, T., Nicolaï, M.-C., Pierre-Justin, C., Bérard, Y., Manin, C., Brass, O., et al. (2005) Characterisation of different strains of poliovirus and influenza virus by differential scanning calorimetry. Biotechnol Appl Biochem 41: 241-246.
22. Lacal, J., Busch, A., Guazzaroni, M., Krell, T., and Ramos, J.L. (2006) The TodS-TodT two-component regulatory system recognizes a wide range of effectors and works with DNA-bending proteins. Proc Natl Acad Sci USA 103: 8191-8196.
23. Ladbury, J.E. (1996) Just add water! The effect of water on the specificity of protein-ligand binding sites and its potential application to drug design. Chem Biol 3: 973-980.
24. Mackey, B.M., Miles, C.A., Parsons, S.E., and Seymour, D.A. (1991) Thermal denaturation of whole cells and cell components of Escherichia coli examined by differential scanning calorimetry. J Gen Microbiol 137: 2361-2374.
25. Martsev, S.P., Kravchuk, Z.I., Chumanevich, A.A., Vlasov, A.P., Dubnovitsky, A.P., Bespalov, I.A., et al. (1998) Antiferritin single-chain antibody: a functional protein with incomplete folding? FEBS Lett 441: 458-462.
26. Nezami, A., Kimura, T., Hidaka, K., Kiso, A., Liu, J., Kiso, Y., et al. (2003) High-affinity inhibition of a family of Plasmodium falciparum porteases by a designed adaptive inhibitor. Biochemistry 42: 8459-8464.
27. Nguyen, H.T., Corry, J.E., and Miles, C.A. (2006) Heat resistance and mechanism of heat inactivation in thermophilic campylobacters. Appl Environ Microbiol 72: 908-913.
28. Ohtaka, H., and Freire, E. (2005) Adaptive inhibitors of the HIV-1 protease. Prog Biophys Mol Biol 88: 193-208.
29. Ohtaka, H., Velásquez-Campoy, A., Xie, D., and Freie, E. (2002) Overcoming drug resistance in HIV-1 chemotherapy: the binding thermodynamics of Amprenavir and TMC-126 to wild-type and drug-resistant mutants of the HIV-1 protease. Protein Sci 11: 1908-1916.
30. Ohtaka, H., Muzammil, S., Schön, A., Velazquez-Campoy, A., Vega, S., and Freire, E. (2004) Thermodynamic rules for the design of high affinity HIV-1 protease inhibitors with adaptability to mutations and high selectivity towards unwanted targets. Int J Biochem Cell Biol 36: 1787-1799.
31. Oladiran, G.S., and Batchelor, H.K. (2007) Determination of ibuprofen solubility in wax: a comparison of microscopic, thermal and release rate techniques. Eur J Pharm Biopharm 67: 106-111.
32. Piedmonte, D.M., Summers, C., McAuley, A., Karamujic, L., and Ratnaswamy, G. (2007) Sorbitol crystallization can lead to protein aggregation in frozen protein formulations. Pharm Res 24: 136-146.
33. Poduch, E., Bello, A.M., Tang, S., Fujihashi, M., Pai, E., and Kotra, L.P. (2006) Design of inhibitors of orotidine monophosphate decarboxylase using bioisiosteric replacement and determination of inhibition kinetics. J Med Chem 49: 4937-4945.
34. Raper, S.E., Chirmule, N., Lee, F.S., Wivel, N.A., Bagg, A., Gao, G.P., et al. (2003) Fatal systemic inflammatory response syndrome in a ornithine transcarbamylase deficient patient following adenoviral gene transfer. Mol Genet Metab 80: 148-158.
35. Remmele, R.L., Jr, Srinivasan, N.S., Nightlinger, S., and Gomboltz, W.R. (1998) Interleukin-1 receptor (IL-1R) liquid formulation development using differential scanning calorimetry. Pharm Res 15: 200-208.
36. Rokbi, B., Renauld-Mongenie, G., Mignon, M., Danve, B., Poncet, D., Chabanel, C., et al. (2000) Allelic diversity of the two transferrin binding protein B gene isotypes among a collection of Neisseria meningitidis strains representative of serogroup B disease: implication for the composition of a recombinant TbpB-based vaccine. Infect Immun 68: 4938-4947.
37. Ruben, A.J., Kiso, Y., and Freire, E. (2006) Overcoming roadblocks in lead optimization: a thermodynamic perspective. Chem Biol Drug Des 67: 2-4.
38. Ryhänen, S.J., Saily, M.J., Paukku, T., Borocci, S., Mancini, G., Holopainen, J.M., et al. (2003) Surface charge density determines the efficiency of cationic gemini surfactant based lipofection. Biophys J 84: 578-587.
39. Sarver, R.W., Peevers, J., Cody, W.L., Ciske, F.L., Dyer, J., Emerson, S.D., et al. (2007) Binding thermodynamics of substituted diaminopyrimidine renin inhibitors. Anal Biochem 360: 30-40.
40. Schön, A., Ingaramo, M., and Freire, E. (2003) The binding of HIV-1 protease inhibitors to human serum proteins. Biophys Chem 105: 221-230.
41. Spencer, S.D., and Raffa, R.B. (2004) Isothermal titration calorimetric study of TNase-A Kinetics (cCMP → 3′-CMP) involving end-product inhibition. Pharmaceut Res 21: 1642-1647.
42. Stecchini, M.L., Del Torre, M., Venir, E., Morettin, A., Furlan, P., and Maltini, E. (2006) Glassy state in Bacillus subtilis spores analyzed by differential scanning calorimetry. Int J Food Microbiol 106: 286-290.
43. Stephenson, K., and Hoch, J.A. (2004) Developing inhibitors to selectively target two-component and phosphorelay signal transduction systems of pathogenic microorganisms. Curr Med Chem 11: 765-773.
44. Stephenson, K., Yamaguchi, Y., and Hoch, J.A. (2000) The mechanism of action of inhibitors of bacterial twocomponent signal transduction systems. J Biol Chem 275: 38900-38904.
45. Tarahovsky, Y.S., Rakhmanova, V.A., Epand, R.M., and MacDonald, R.C. (2002) High temperature stabilization of DNA in complexes with cationic lipids. Biophys J 82: 264-273.
46. Tiwari, A., and Bhat, R. (2006) Stabilization of yeast hexokinase A by polyol osmolytes: correlation with the physicochemical properties of aqueous solutions. Biophys Chem 124: 90-99.
47. Todd, M.J., and Gomez, J. (2001) Enzyme kinetics determined using calorimetry: a general assay for enzyme activity? Anal Biochem 296: 179-187.
48. Tsamaloukas, A.D., Keller, S., and Heerklotz, H. (2007) Uptake and release protocol for assessing membrane binding and permeation by way of isothermal titration calorimetry. Nat Protoc 2: 695-704.
49. Velázquez-Campoy, A., Todd, M., and Freire, E. (2000) Enthalpic versus entropic optimization of the binding affinity. Biochemistry 39: 2201-2207.
50. Velázquez-Campoy, A., Kiso, Y., and Freire, E. (2001) The binding energetics of first- and second generation HIV-1 protease inhibitors: implications for drug design. Arch Biochem Biophys 390: 169-175.
51. Velázquez-Campoy, A., Muzammil, S., Ohtaka, H., Schön, A., Vega, S., and Freire, E. (2003) Structural and thermodynamic basis of resistance to HIV-1 protease inhibition: implications for inhibitor design. Curr Drug Targets Infect Disord 3: 311-328.
52. West, D., Reddin, K., Matheson, M., Heath, R., Funnell, S., Hudson, M., et al. (2001) Recombinant Neisseria meningitidis transferrin binding protein A protects against experimental meningococcal infection. Infect Immun 69: 1561-1567.
53. Wu, J.Y., Liu, S.Q., Heng, P.W., and Yang, Y.Y. (2005) Evaluating protein release from, and their interactions with, thermosensitive poly (N-isopropylacrylamide) hydrogels. J Control Release 102: 361-372.