메뉴 건너뛰기




Volumn 384, Issue 5, 2008, Pages 1384-1399

Visualization of Bacteriophage T3 Capsids with DNA Incompletely Packaged In Vivo

Author keywords

3 D reconstruction; buoyant density centrifugation; cryo EM; DNA packaging; mass spectrometry

Indexed keywords

DOUBLE STRANDED DNA;

EID: 56949105031     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2008.10.012     Document Type: Article
Times cited : (23)

References (44)
  • 2
    • 0042827209 scopus 로고    scopus 로고
    • Molecular mechanisms in bacteriophage T7 procapsid assembly, maturation, and DNA containment
    • Cerritelli M.E., Conway J.F., Cheng N., Trus B.L., and Steven A.C. Molecular mechanisms in bacteriophage T7 procapsid assembly, maturation, and DNA containment. Adv. Protein Chem. 64 (2003) 301-323
    • (2003) Adv. Protein Chem. , vol.64 , pp. 301-323
    • Cerritelli, M.E.1    Conway, J.F.2    Cheng, N.3    Trus, B.L.4    Steven, A.C.5
  • 3
    • 0031218420 scopus 로고    scopus 로고
    • Phage DNA packaging
    • Fujisawa H., and Morita M. Phage DNA packaging. Genes Cells 2 (1997) 537-545
    • (1997) Genes Cells , vol.2 , pp. 537-545
    • Fujisawa, H.1    Morita, M.2
  • 4
    • 0027284268 scopus 로고
    • The direction and rate of bacteriophage T7 DNA packaging in vitro
    • Son M., Watson R.H., and Serwer P. The direction and rate of bacteriophage T7 DNA packaging in vitro. Virology 196 (1993) 282-289
    • (1993) Virology , vol.196 , pp. 282-289
    • Son, M.1    Watson, R.H.2    Serwer, P.3
  • 5
    • 0023660876 scopus 로고
    • Characterization of the bacteriophage T3 DNA packaging reaction in vitro in a defined system
    • Shibata H., Fujisawa H., and Minagawa T. Characterization of the bacteriophage T3 DNA packaging reaction in vitro in a defined system. J. Mol. Biol. 196 (1987) 845-851
    • (1987) J. Mol. Biol. , vol.196 , pp. 845-851
    • Shibata, H.1    Fujisawa, H.2    Minagawa, T.3
  • 6
    • 0032816941 scopus 로고    scopus 로고
    • Single-event analysis of the packaging of bacteriophage T7 DNA concatemers in vitro
    • Sun M., Louie D., and Serwer P. Single-event analysis of the packaging of bacteriophage T7 DNA concatemers in vitro. Biophys. J. 77 (1999) 1627-1637
    • (1999) Biophys. J. , vol.77 , pp. 1627-1637
    • Sun, M.1    Louie, D.2    Serwer, P.3
  • 7
    • 0021112697 scopus 로고
    • Comparison of the physical properties and assembly pathways of the related bacteriophages T7, T3 and phi II
    • Serwer P., Watson R.H., Hayes S.J., and Allen J.L. Comparison of the physical properties and assembly pathways of the related bacteriophages T7, T3 and phi II. J. Mol. Biol. 170 (1983) 447-469
    • (1983) J. Mol. Biol. , vol.170 , pp. 447-469
    • Serwer, P.1    Watson, R.H.2    Hayes, S.J.3    Allen, J.L.4
  • 8
    • 32744469335 scopus 로고    scopus 로고
    • Viral genome packaging machines: an overview
    • Catalano C.E. (Ed), Landes Bioscience, Georgetown, TX
    • Catalano C.E. Viral genome packaging machines: an overview. In: Catalano C.E. (Ed). Viral Genome Packaging Machines: Genetics, Structure and Mechanism (2005), Landes Bioscience, Georgetown, TX 1-4
    • (2005) Viral Genome Packaging Machines: Genetics, Structure and Mechanism , pp. 1-4
    • Catalano, C.E.1
  • 9
    • 0033966457 scopus 로고    scopus 로고
    • The terminase enzyme from bacteriophage lambda: a DNA-packaging machine
    • Catalano C.E. The terminase enzyme from bacteriophage lambda: a DNA-packaging machine. Cell. Mol. Life Sci. 57 (2000) 128-148
    • (2000) Cell. Mol. Life Sci. , vol.57 , pp. 128-148
    • Catalano, C.E.1
  • 10
    • 34147123766 scopus 로고    scopus 로고
    • DNA packaging and delivery machines in tailed bacteriophages
    • Johnson J.E., and Chiu W. DNA packaging and delivery machines in tailed bacteriophages. Curr. Opin. Struct. Biol. 17 (2007) 237-243
    • (2007) Curr. Opin. Struct. Biol. , vol.17 , pp. 237-243
    • Johnson, J.E.1    Chiu, W.2
  • 12
    • 33744811672 scopus 로고    scopus 로고
    • Cryo-EM asymmetric reconstruction of bacteriophage P22 reveals organization of its DNA packaging and infecting machinery
    • Chang J., Weigele P., King J., Chiu W., and Jiang W. Cryo-EM asymmetric reconstruction of bacteriophage P22 reveals organization of its DNA packaging and infecting machinery. Structure 14 (2006) 1073-1082
    • (2006) Structure , vol.14 , pp. 1073-1082
    • Chang, J.1    Weigele, P.2    King, J.3    Chiu, W.4    Jiang, W.5
  • 13
    • 33745506037 scopus 로고    scopus 로고
    • The structure of an infectious P22 virion shows the signal for headful DNA packaging
    • Lander G.C., Tang L., Casjens S.R., Gilcrease E.B., Prevelige P., Poliakov A., et al. The structure of an infectious P22 virion shows the signal for headful DNA packaging. Science 312 (2006) 1791-1795
    • (2006) Science , vol.312 , pp. 1791-1795
    • Lander, G.C.1    Tang, L.2    Casjens, S.R.3    Gilcrease, E.B.4    Prevelige, P.5    Poliakov, A.6
  • 16
    • 31844435708 scopus 로고    scopus 로고
    • Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus
    • Jiang W., Chang J., Jakana J., Weigele P., King J., and Chiu W. Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus. Nature 439 (2006) 612-616
    • (2006) Nature , vol.439 , pp. 612-616
    • Jiang, W.1    Chang, J.2    Jakana, J.3    Weigele, P.4    King, J.5    Chiu, W.6
  • 18
    • 0037340654 scopus 로고    scopus 로고
    • Forces and pressures in DNA packaging and release from viral capsids
    • Tzlil S., Kindt J.T., Gelbart W.M., and Ben-Shaul A. Forces and pressures in DNA packaging and release from viral capsids. Biophys. J. 84 (2003) 1616-1627
    • (2003) Biophys. J. , vol.84 , pp. 1616-1627
    • Tzlil, S.1    Kindt, J.T.2    Gelbart, W.M.3    Ben-Shaul, A.4
  • 20
    • 0031688164 scopus 로고    scopus 로고
    • Hexagonally packed DNA within bacteriophage T7 stabilized by curvature stress
    • Odijk T. Hexagonally packed DNA within bacteriophage T7 stabilized by curvature stress. Biophys. J. 75 (1998) 1223-1227
    • (1998) Biophys. J. , vol.75 , pp. 1223-1227
    • Odijk, T.1
  • 22
    • 0020666329 scopus 로고
    • Stability and in vitro DNA packaging of bacteriophages: effects of dextrans, sugars, and polyols
    • Serwer P., Masker W.E., and Allen J.L. Stability and in vitro DNA packaging of bacteriophages: effects of dextrans, sugars, and polyols. J. Virol. 45 (1983) 665-671
    • (1983) J. Virol. , vol.45 , pp. 665-671
    • Serwer, P.1    Masker, W.E.2    Allen, J.L.3
  • 24
    • 37749051185 scopus 로고    scopus 로고
    • Portal motor velocity and internal force resisting viral DNA packaging in bacteriophage phi29
    • Rickgauer J.P., Fuller D.N., Grimes S., Jardine P.J., Anderson D.L., and Smith D.E. Portal motor velocity and internal force resisting viral DNA packaging in bacteriophage phi29. Biophys. J. 94 (2008) 159-167
    • (2008) Biophys. J. , vol.94 , pp. 159-167
    • Rickgauer, J.P.1    Fuller, D.N.2    Grimes, S.3    Jardine, P.J.4    Anderson, D.L.5    Smith, D.E.6
  • 25
    • 35148815738 scopus 로고    scopus 로고
    • Measurements of single DNA molecule packaging dynamics in bacteriophage lambda reveal high forces, high motor processivity, and capsid transformations
    • Fuller D.N., Raymer D.M., Rickgauer J.P., Robertson R.M., Catalano C.E., Anderson D.L., et al. Measurements of single DNA molecule packaging dynamics in bacteriophage lambda reveal high forces, high motor processivity, and capsid transformations. J. Mol. Biol. 373 (2007) 1113-1122
    • (2007) J. Mol. Biol. , vol.373 , pp. 1113-1122
    • Fuller, D.N.1    Raymer, D.M.2    Rickgauer, J.P.3    Robertson, R.M.4    Catalano, C.E.5    Anderson, D.L.6
  • 26
    • 38549181536 scopus 로고    scopus 로고
    • Osmotic pressure and packaging structure of caged DNA
    • Li Z., Wu J., and Wang Z.G. Osmotic pressure and packaging structure of caged DNA. Biophys. J. 94 (2008) 737-746
    • (2008) Biophys. J. , vol.94 , pp. 737-746
    • Li, Z.1    Wu, J.2    Wang, Z.G.3
  • 27
    • 33846113838 scopus 로고    scopus 로고
    • Structural and thermodynamic principles of viral packaging
    • Petrov A.S., and Harvey S.C. Structural and thermodynamic principles of viral packaging. Structure 15 (2007) 21-27
    • (2007) Structure , vol.15 , pp. 21-27
    • Petrov, A.S.1    Harvey, S.C.2
  • 28
    • 33745759318 scopus 로고    scopus 로고
    • Langevin dynamics simulations of genome packing in bacteriophage
    • Forrey C., and Muthukumar M. Langevin dynamics simulations of genome packing in bacteriophage. Biophys. J. 91 (2006) 25-41
    • (2006) Biophys. J. , vol.91 , pp. 25-41
    • Forrey, C.1    Muthukumar, M.2
  • 29
    • 22244483736 scopus 로고    scopus 로고
    • DNA packaging in bacteriophage: is twist important?
    • Spakowitz A.J., and Wang Z.G. DNA packaging in bacteriophage: is twist important?. Biophys. J. 88 (2005) 3912-3923
    • (2005) Biophys. J. , vol.88 , pp. 3912-3923
    • Spakowitz, A.J.1    Wang, Z.G.2
  • 30
    • 0029095459 scopus 로고
    • Specific, nonproductive cleavage of packaged bacteriophage T7 DNA in vivo
    • Khan S.A., Hayes S.J., Watson R.H., and Serwer P. Specific, nonproductive cleavage of packaged bacteriophage T7 DNA in vivo. Virology 210 (1995) 409-420
    • (1995) Virology , vol.210 , pp. 409-420
    • Khan, S.A.1    Hayes, S.J.2    Watson, R.H.3    Serwer, P.4
  • 31
    • 0036300881 scopus 로고    scopus 로고
    • Complete nucleotide sequence and likely recombinatorial origin of bacteriophage T3
    • Pajunen M.I., Elizondo M.R., Skurnik M., Kieleczawa J., and Molineux I.J. Complete nucleotide sequence and likely recombinatorial origin of bacteriophage T3. J. Mol. Biol. 319 (2002) 1115-1132
    • (2002) J. Mol. Biol. , vol.319 , pp. 1115-1132
    • Pajunen, M.I.1    Elizondo, M.R.2    Skurnik, M.3    Kieleczawa, J.4    Molineux, I.J.5
  • 32
    • 0028947389 scopus 로고
    • Non-denaturing gel electrophoresis of biological nanoparticles: viruses
    • Serwer P., Khan S.A., and Griess G.A. Non-denaturing gel electrophoresis of biological nanoparticles: viruses. J. Chromatogr., A. 698 (1995) 251-261
    • (1995) J. Chromatogr., A. , vol.698 , pp. 251-261
    • Serwer, P.1    Khan, S.A.2    Griess, G.A.3
  • 33
    • 0018837780 scopus 로고
    • A metrizamide-impermeable capsid in the DNA packaging pathway of bacteriophage T7
    • Serwer P. A metrizamide-impermeable capsid in the DNA packaging pathway of bacteriophage T7. J. Mol. Biol. 138 (1980) 65-91
    • (1980) J. Mol. Biol. , vol.138 , pp. 65-91
    • Serwer, P.1
  • 34
    • 0037313264 scopus 로고    scopus 로고
    • Coat protein fold and maturation transition of bacteriophage P22 seen at subnanometer resolutions
    • Jiang W., Li Z., Zhang Z., Baker M.L., Prevelige Jr. P.E., and Chiu W. Coat protein fold and maturation transition of bacteriophage P22 seen at subnanometer resolutions. Nat. Struct. Biol. 10 (2003) 131-135
    • (2003) Nat. Struct. Biol. , vol.10 , pp. 131-135
    • Jiang, W.1    Li, Z.2    Zhang, Z.3    Baker, M.L.4    Prevelige Jr., P.E.5    Chiu, W.6
  • 35
    • 0021040481 scopus 로고
    • Tests of spool models for DNA packaging in phage lambda
    • Widom J., and Baldwin R.L. Tests of spool models for DNA packaging in phage lambda. J. Mol. Biol. 171 (1983) 419-437
    • (1983) J. Mol. Biol. , vol.171 , pp. 419-437
    • Widom, J.1    Baldwin, R.L.2
  • 36
    • 0026537447 scopus 로고
    • Conformation of DNA packaged in bacteriophage T7. Analysis by use of ultraviolet light-induced DNA-capsid cross-linking
    • Serwer P., Hayes S.J., and Watson R.H. Conformation of DNA packaged in bacteriophage T7. Analysis by use of ultraviolet light-induced DNA-capsid cross-linking. J. Mol. Biol. 223 (1992) 999-1011
    • (1992) J. Mol. Biol. , vol.223 , pp. 999-1011
    • Serwer, P.1    Hayes, S.J.2    Watson, R.H.3
  • 38
    • 13844267636 scopus 로고    scopus 로고
    • Analysis of biological motors via multidimensional fractionation: a strategy
    • Serwer P. Analysis of biological motors via multidimensional fractionation: a strategy. Electrophoresis 26 (2005) 494-499
    • (2005) Electrophoresis , vol.26 , pp. 494-499
    • Serwer, P.1
  • 39
    • 0018380111 scopus 로고
    • Relationships among different strains of T7 and among T7-related bacteriophages
    • Studier F.W. Relationships among different strains of T7 and among T7-related bacteriophages. Virology 95 (1979) 70-84
    • (1979) Virology , vol.95 , pp. 70-84
    • Studier, F.W.1
  • 40
    • 0033377664 scopus 로고    scopus 로고
    • EMAN: semiautomated software for high-resolution single-particle reconstructions
    • Ludtke S.J., Baldwin P.R., and Chiu W. EMAN: semiautomated software for high-resolution single-particle reconstructions. J. Struct. Biol. 128 (1999) 82-97
    • (1999) J. Struct. Biol. , vol.128 , pp. 82-97
    • Ludtke, S.J.1    Baldwin, P.R.2    Chiu, W.3
  • 41
    • 0035782663 scopus 로고    scopus 로고
    • Fourier amplitude decay of electron cryomicroscopic images of single particles and effects on structure determination
    • Saad A., Ludtke S.J., Jakana J., Rixon F.J., Tsuruta H., and Chiu W. Fourier amplitude decay of electron cryomicroscopic images of single particles and effects on structure determination. J. Struct. Biol. 133 (2001) 32-42
    • (2001) J. Struct. Biol. , vol.133 , pp. 32-42
    • Saad, A.1    Ludtke, S.J.2    Jakana, J.3    Rixon, F.J.4    Tsuruta, H.5    Chiu, W.6
  • 42
    • 34548643898 scopus 로고    scopus 로고
    • Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm
    • Liu X., Jiang W., Jakana J., and Chiu W. Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. J. Struct. Biol. 160 (2007) 11-27
    • (2007) J. Struct. Biol. , vol.160 , pp. 11-27
    • Liu, X.1    Jiang, W.2    Jakana, J.3    Chiu, W.4
  • 43
    • 0000313739 scopus 로고
    • Exact filters for general geometry three dimensional reconstruction
    • Harauz G., and van Heel M. Exact filters for general geometry three dimensional reconstruction. Optik 73 (1986) 146-156
    • (1986) Optik , vol.73 , pp. 146-156
    • Harauz, G.1    van Heel, M.2
  • 44


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.