메뉴 건너뛰기




Volumn 384, Issue 5, 2008, Pages 1037-1047

Two Levels of Cooperativeness in the Binding of TodT to the tod Operon Promoter

Author keywords

Pseudomonas; response regulator; sensor kinases; TodT; two component systems

Indexed keywords

BACTERIAL PROTEIN; DNA FRAGMENT; PROTEIN TODT; RECOMBINANT DNA; UNCLASSIFIED DRUG;

EID: 56949087359     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2008.10.011     Document Type: Article
Times cited : (16)

References (32)
  • 1
    • 0024362775 scopus 로고
    • Genetic and physical mapping of the mcrA (rglA) and mcrB (rglB) loci of Escherichia coli K-12
    • Raleigh E.A., Trimarchi R., and Revel H. Genetic and physical mapping of the mcrA (rglA) and mcrB (rglB) loci of Escherichia coli K-12. Genetics 122 (1989) 279-296
    • (1989) Genetics , vol.122 , pp. 279-296
    • Raleigh, E.A.1    Trimarchi, R.2    Revel, H.3
  • 3
    • 0029020954 scopus 로고
    • Isolation and expansion of the catabolic potential of a Pseudomonas putida strain able to grow in the presence of high concentrations of aromatic hydrocarbons
    • Ramos J.L., Duque E., Huertas M.J., and Haïdour A. Isolation and expansion of the catabolic potential of a Pseudomonas putida strain able to grow in the presence of high concentrations of aromatic hydrocarbons. J. Bacteriol. 177 (1995) 3911-3916
    • (1995) J. Bacteriol. , vol.177 , pp. 3911-3916
    • Ramos, J.L.1    Duque, E.2    Huertas, M.J.3    Haïdour, A.4
  • 4
    • 33744460220 scopus 로고    scopus 로고
    • The TodS-TodT two-component regulatory system recognizes a wide range of effectors and works with DNA-bending proteins
    • Lacal J., Busch A., Guazzaroni M.E., Krell T., and Ramos J.L. The TodS-TodT two-component regulatory system recognizes a wide range of effectors and works with DNA-bending proteins. Proc. Natl Acad. Sci. USA 103 (2006) 8191-8196
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 8191-8196
    • Lacal, J.1    Busch, A.2    Guazzaroni, M.E.3    Krell, T.4    Ramos, J.L.5
  • 5
    • 38349194474 scopus 로고    scopus 로고
    • Hierarchical binding of the TodT response regulator to its multiple recognition sites at the tod pathway operon promoter
    • Lacal J., Guazzaroni M.E., Busch A., Krell T., and Ramos J.L. Hierarchical binding of the TodT response regulator to its multiple recognition sites at the tod pathway operon promoter. J. Mol. Biol. 376 (2008) 325-337
    • (2008) J. Mol. Biol. , vol.376 , pp. 325-337
    • Lacal, J.1    Guazzaroni, M.E.2    Busch, A.3    Krell, T.4    Ramos, J.L.5
  • 6
    • 0036956901 scopus 로고    scopus 로고
    • Cross-regulation between a novel two-component signal transduction system for catabolism of toluene in Pseudomonas mendocina and the TodST system from Pseudomonas putida
    • Ramos-González M.I., Olson M., Gatenby A.A., Mosqueda G., Manzanera M., Campos M.J., et al. Cross-regulation between a novel two-component signal transduction system for catabolism of toluene in Pseudomonas mendocina and the TodST system from Pseudomonas putida. J. Bacteriol. 184 (2002) 7062-7067
    • (2002) J. Bacteriol. , vol.184 , pp. 7062-7067
    • Ramos-González, M.I.1    Olson, M.2    Gatenby, A.A.3    Mosqueda, G.4    Manzanera, M.5    Campos, M.J.6
  • 7
    • 0021750022 scopus 로고
    • Isolation and characterization of Pseudomonas putida PpF1 mutants defective in the toluene dioxygenase enzyme system
    • Finette B.A., Subramanian V., and Gibson D.T. Isolation and characterization of Pseudomonas putida PpF1 mutants defective in the toluene dioxygenase enzyme system. J. Bacteriol. 160 (1984) 1003-1009
    • (1984) J. Bacteriol. , vol.160 , pp. 1003-1009
    • Finette, B.A.1    Subramanian, V.2    Gibson, D.T.3
  • 8
    • 0024025415 scopus 로고
    • Toluene degradation by Pseudomonas putida F1: genetic organization of the tod operon
    • Zylstra G.J., McCombie W.R., Gibson D.T., and Finette B.A. Toluene degradation by Pseudomonas putida F1: genetic organization of the tod operon. Appl. Environ. Microbiol. 54 (1988) 1498-1503
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 1498-1503
    • Zylstra, G.J.1    McCombie, W.R.2    Gibson, D.T.3    Finette, B.A.4
  • 9
    • 0024427069 scopus 로고
    • Toluene degradation by Pseudomonas putida F1. Nucleotide sequence of the todC1C2BADE genes and their expression in Escherichia coli
    • Zylstra G.J., and Gibson D.T. Toluene degradation by Pseudomonas putida F1. Nucleotide sequence of the todC1C2BADE genes and their expression in Escherichia coli. J. Biol. Chem. 264 (1989) 14940-14946
    • (1989) J. Biol. Chem. , vol.264 , pp. 14940-14946
    • Zylstra, G.J.1    Gibson, D.T.2
  • 10
    • 0344731433 scopus 로고    scopus 로고
    • Toluene metabolism by the solvent-tolerant Pseudomonas putida DOT-T1 strain, and its role in solvent impermeabilization
    • Mosqueda G., Ramos-González M.I., and Ramos J.L. Toluene metabolism by the solvent-tolerant Pseudomonas putida DOT-T1 strain, and its role in solvent impermeabilization. Gene 232 (1999) 69-76
    • (1999) Gene , vol.232 , pp. 69-76
    • Mosqueda, G.1    Ramos-González, M.I.2    Ramos, J.L.3
  • 12
    • 35348842602 scopus 로고    scopus 로고
    • The bacterial TodS sensor kinase interacts with agonists and antagonists
    • Busch A., Lacal J., Martos A., Ramos J.L., and Krell T. The bacterial TodS sensor kinase interacts with agonists and antagonists. Proc. Natl Acad. Sci. USA 104 (2007) 13774-13779
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 13774-13779
    • Busch, A.1    Lacal, J.2    Martos, A.3    Ramos, J.L.4    Krell, T.5
  • 13
    • 33745219470 scopus 로고    scopus 로고
    • Transcription regulation of ompF and ompC by a single transcription factor, OmpR
    • Yoshida T., Qin L., Egger L.A., and Inouye M. Transcription regulation of ompF and ompC by a single transcription factor, OmpR. J. Biol. Chem. 281 (2006) 17114-17123
    • (2006) J. Biol. Chem. , vol.281 , pp. 17114-17123
    • Yoshida, T.1    Qin, L.2    Egger, L.A.3    Inouye, M.4
  • 14
    • 0024391421 scopus 로고
    • DNA-binding properties of the transcription activator (OmpR) for the upstream sequences of ompF in Escherichia coli are altered by envZ mutations and medium osmolarity
    • Forst S.A., Delgado J., and Inouye M. DNA-binding properties of the transcription activator (OmpR) for the upstream sequences of ompF in Escherichia coli are altered by envZ mutations and medium osmolarity. J. Bacteriol. 171 (1989) 2949-2955
    • (1989) J. Bacteriol. , vol.171 , pp. 2949-2955
    • Forst, S.A.1    Delgado, J.2    Inouye, M.3
  • 15
    • 56949106817 scopus 로고    scopus 로고
    • Microcalorimetry: a response to challenges in modern biotechnology
    • Krell T. Microcalorimetry: a response to challenges in modern biotechnology. Microb. Biotechnol. 1 (2008) 126-136
    • (2008) Microb. Biotechnol. , vol.1 , pp. 126-136
    • Krell, T.1
  • 16
    • 24344450314 scopus 로고    scopus 로고
    • An active-like structure in the unphosphorylated StyR response regulator suggests a phosphorylation-dependent allosteric activation mechanism
    • Milani M., Leoni L., Rampioni G., Zennaro E., Ascenzi P., and Bolognesi M. An active-like structure in the unphosphorylated StyR response regulator suggests a phosphorylation-dependent allosteric activation mechanism. Structure 13 (2005) 1289-1297
    • (2005) Structure , vol.13 , pp. 1289-1297
    • Milani, M.1    Leoni, L.2    Rampioni, G.3    Zennaro, E.4    Ascenzi, P.5    Bolognesi, M.6
  • 17
    • 0032540859 scopus 로고    scopus 로고
    • Sequence-dependent DNA structure: the role of the sugar-phosphate backbone
    • Packer M.J., and Hunter C.A. Sequence-dependent DNA structure: the role of the sugar-phosphate backbone. J. Mol. Biol. 280 (1998) 407-420
    • (1998) J. Mol. Biol. , vol.280 , pp. 407-420
    • Packer, M.J.1    Hunter, C.A.2
  • 18
    • 44449112421 scopus 로고    scopus 로고
    • Specificity in two-component signal transduction pathways
    • Laub M.T., and Goulian M. Specificity in two-component signal transduction pathways. Annu. Rev. Genet. 41 (2007) 121-145
    • (2007) Annu. Rev. Genet. , vol.41 , pp. 121-145
    • Laub, M.T.1    Goulian, M.2
  • 19
    • 33744983969 scopus 로고    scopus 로고
    • Structural classification of bacterial response regulators: diversity of output domains and domain combinations
    • Galperin M.Y. Structural classification of bacterial response regulators: diversity of output domains and domain combinations. J. Bacteriol. 188 (2006) 4169-4182
    • (2006) J. Bacteriol. , vol.188 , pp. 4169-4182
    • Galperin, M.Y.1
  • 20
    • 33845640610 scopus 로고    scopus 로고
    • Stimulus perception in bacterial signal-transducing histidine kinases
    • Mascher T., Helmann J.D., and Unden G. Stimulus perception in bacterial signal-transducing histidine kinases. Microbiol. Mol. Biol. Rev. 70 (2006) 910-938
    • (2006) Microbiol. Mol. Biol. Rev. , vol.70 , pp. 910-938
    • Mascher, T.1    Helmann, J.D.2    Unden, G.3
  • 21
    • 12944325784 scopus 로고    scopus 로고
    • One-component systems dominate signal transduction in prokaryotes
    • Ulrich E., Koonin E.V., and Zhulin I.B. One-component systems dominate signal transduction in prokaryotes. Trends Microbiol. 13 (2005) 52-56
    • (2005) Trends Microbiol. , vol.13 , pp. 52-56
    • Ulrich, E.1    Koonin, E.V.2    Zhulin, I.B.3
  • 23
    • 0028875660 scopus 로고
    • Tandem binding of six OmpR proteins to the ompF upstream regulatory sequence of Escherichia coli
    • Harlocker S.L., Bergstrom L., and Inouye M. Tandem binding of six OmpR proteins to the ompF upstream regulatory sequence of Escherichia coli. J. Biol. Chem. 270 (1995) 26849-26856
    • (1995) J. Biol. Chem. , vol.270 , pp. 26849-26856
    • Harlocker, S.L.1    Bergstrom, L.2    Inouye, M.3
  • 24
    • 0030580087 scopus 로고    scopus 로고
    • Identification of the bases in the ompF regulatory region, which interact with the transcription factor OmpR
    • Huang K.J., and Igo M.M. Identification of the bases in the ompF regulatory region, which interact with the transcription factor OmpR. J. Mol. Biol. 262 (1996) 615-628
    • (1996) J. Mol. Biol. , vol.262 , pp. 615-628
    • Huang, K.J.1    Igo, M.M.2
  • 25
    • 0032739281 scopus 로고    scopus 로고
    • C-terminal DNA binding stimulates N-terminal phosphorylation of the outer membrane protein regulator OmpR from Escherichia coli
    • Ames S.K., Frankema N., and Kenney L.J. C-terminal DNA binding stimulates N-terminal phosphorylation of the outer membrane protein regulator OmpR from Escherichia coli. Proc. Natl Acad. Sci. USA 96 (1999) 11792-11797
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 11792-11797
    • Ames, S.K.1    Frankema, N.2    Kenney, L.J.3
  • 26
    • 0036229494 scopus 로고    scopus 로고
    • Identification of binding sites for the group A streptococcal global regulator CovR
    • Federle M.J., and Scott J.R. Identification of binding sites for the group A streptococcal global regulator CovR. Mol. Microbiol. 43 (2002) 1161-1172
    • (2002) Mol. Microbiol. , vol.43 , pp. 1161-1172
    • Federle, M.J.1    Scott, J.R.2
  • 27
    • 28244452053 scopus 로고    scopus 로고
    • Binding of the global response regulator protein CovR to the sag promoter of Streptococcus pyogenes reveals a new mode of CovR-DNA interaction
    • Gao J., Gusa A.A., Scott J.R., and Churchward G. Binding of the global response regulator protein CovR to the sag promoter of Streptococcus pyogenes reveals a new mode of CovR-DNA interaction. J. Biol. Chem. 280 (2005) 38948-38956
    • (2005) J. Biol. Chem. , vol.280 , pp. 38948-38956
    • Gao, J.1    Gusa, A.A.2    Scott, J.R.3    Churchward, G.4
  • 29
    • 0004265596 scopus 로고
    • Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.G., Smith J.A., and Struhl K. (Eds), John Wiley and Sons, New York, NY
    • In: Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.G., Smith J.A., and Struhl K. (Eds). Current Protocols in Molecular Microbiology (1994), John Wiley and Sons, New York, NY
    • (1994) Current Protocols in Molecular Microbiology
  • 30
    • 0024357889 scopus 로고
    • Regulator and enzyme specificity of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway
    • Abril M.A., Michán C., Timmis K.N., and Ramos J.L. Regulator and enzyme specificity of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway. J. Bacteriol. 171 (1989) 6782-6790
    • (1989) J. Bacteriol. , vol.171 , pp. 6782-6790
    • Abril, M.A.1    Michán, C.2    Timmis, K.N.3    Ramos, J.L.4
  • 31
    • 0024356301 scopus 로고
    • Rapid measurement of binding constants and heats of binding using a new titration calorimeter
    • Wiseman T., Williston S., Brandts J.F., and Lin L.N. Rapid measurement of binding constants and heats of binding using a new titration calorimeter. Anal. Biochem. 179 (1989) 131-137
    • (1989) Anal. Biochem. , vol.179 , pp. 131-137
    • Wiseman, T.1    Williston, S.2    Brandts, J.F.3    Lin, L.N.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.