SSCP markers provide a useful alternative to microsatellites in genotyping and estimating genetic diversity in populations and germplasm collections of plant specialty crops

Electrophoresis

Volumn 29, Issue 19, 2008, Pages 4096-4108

  Kuhn, David N ^a   Motamayor, Juan Carlos ^a,b   Meerow, Alan W ^a   Borrone, James W ^a,c   Schnell, Raymond J ^a  

^a U S DEPARTMENT OF AGRICULTURE   (United States)

^b MARS INC   (United States)

^c OKLAHOMA STATE UNIVERSITY   (United States)

Author keywords

Genetic distance; Germplasm collections; Microsatellites; Population genetics; SSCP markers

Indexed keywords

BIODIVERSITY; DNA SEQUENCES; ELECTROPHORETIC MOBILITY; GENES; POPULATION STATISTICS;

GENETIC DISTANCES; GENETICS DIVERSITIES; GENOTYPING; GERMPLASM COLLECTIONS; MICROSATELLITE MARKERS; MICROSATELLITES; PLANT SPECIES; POPULATION GENETICS; SSCP MARKER; WHOLE GENOME SEQUENCES;

CROPS;

GENOMIC DNA;

CACAO; CONFERENCE PAPER; CROP; GENE AMPLIFICATION; GENE FREQUENCY; GENE LOCUS; GENE SEQUENCE; GENETIC DISTANCE; GENETIC VARIABILITY; GENOME ANALYSIS; GERMPLASM; INTERMETHOD COMPARISON; MICROSATELLITE MARKER; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENETICS; POLYMERASE CHAIN REACTION; POPULATION GENETICS; SINGLE NUCLEOTIDE POLYMORPHISM; SINGLE STRAND CONFORMATION POLYMORPHISM;

EID: 56849094418     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.200700937     Document Type: Conference Paper

References (33)

1. Weir, B. S., Euphytica 2007, 154, 355-364.
2. Rafalski, J. A., Plant Sci. 2002, 162, 329-333.
3. Meerow, A. W., Wisser, R. J., Brown, J. S., Kuhn, D. N. et al., Theor. Appl. Genet. 2003, 106, 715-726.
4. Schnell, R. J., Brown, J. S., Olano, C. T., Power, E. J. et al., J. Am. Soc. Hortic. Sci. 2003, 128, 881-889.
5. Meerow, A. W., Roh, M. S., Schnell, R. J., Mol. Ecol. Notes 2005, 5, 777-779.
6. Meerow, A. W., Gideon, M., Kuhn, D. N., Schnell, R. J., Mol. Ecol. Notes 2005, 5, 410-412.
7. Schnell, R. J., Olano, C. T., Quintanilla, W. E., Meerow, A. W., Mol. Ecol. Notes 2005, 5, 625-627.
8. Mauro-Herrera, M., Meerow, A. W., Borrone, J. W., Kuhn, D. N., Schnell, R. J., Mol. Ecol. Notes 2006, 6, 904-906.
9. Borrone, J. W., Brown, J. S., Kuhn, D. N., Motamayor, J. C., Schnell, R. J., Mol. Ecol. Notes 2007, 7, 236-239.
10. Kuhn, D. N., Heath, M., Wisser, R. J., Meerow, A. et al., Theor. Appl. Genet. 2003, 107, 191-202.
11. Kuhn, D. N., Schnell, R. J., Meth. Enzymol. 2005, 395, 238-258.
12. Kuhn, D. N., Borrone, J., Meerow, A. W., Motamayor, J. C. et al., Electrophoresis 2005, 26, 112-125.
13. Brown, J. S., Schnell, R. J., Motamayor, J. C., Lopes, U. et al., J. Am. Soc. Hortic. Sci. 2005, 130, 366-373.
14. Bartley, B. G. D., The Genetic Diversity of Cacao and its Utilization. CABI Publishing, Wallingford, UK 2004.
15. Schnell, R. J., Olano, C. T., Brown, J. S., Meerow, A. W. et al., J. Am. Soc. Hortic. Sci. 2005, 130, 181-190.
16. Borrone, J. W., Kuhn, D. N., Schnell, R. J., Theor. Appl. Genet. 2004, 109, 495-507.
17. Kuhn, D. N., Narasimhan, G., Nakamura, K., Brown, J. S. et al., J. Am. Soc. Hortic. Sci. 2006, 131, 806-813.
18. Peakall, R., Smouse, P. E., Mol. Ecol. Notes 2006, 6, 288-295.
19. Glaubitz, J. C., Mol. Ecol. Notes 2004, 4, 309-310.
20. Jin, L., Chakraborty, R., Mol. Biol. Evol. 1994, 11, 120-127.
21. Ewing, B., Hillier, L., Wendl, M. C., Green, P., Genome Res. 1998, 8, 175-185.
22. Ewing, B., Green, P., Genome Res. 1998, 8, 186-194.
23. Gordon, D., Abajian, C., Green, P., Genome Res. 1998, 8, 195-202.
24. Stephens, M., Sloan, J. S., Robertson, P. D., Scheet, P., Nickerson, D. A., Nature Genet. 2006, 38, 375-381.
25. Saunders, J. A., Mischke, S., Leamy, E. A., Hemeida, A. A., Theor. Appl. Genet. 2004, 110, 41-47.
26. Cervantes-Martinez, C., Brown, J. S., Schnell, R. J., Phillips-Mora, W. et al., J. Am. Soc. Hortic. Sci. 2006, 131, 231-241.
27. Lanaud, C., Risterucci, A. M., Pieretti, I., Falque, M. et al., Mol. Ecol. 1999, 8, 2141-2143.
28. Pugh, T., Fouet, O., Risterucci, A. M., Brottier, P. et al., Theor. Appl. Genet. 2004, 108, 1151-1161.
29. Peakall, R., Smouse, P. E., Huff, D. R., Mol. Ecol. 1995, 4, 135-147.
30. Maguire, T. L., Peakall, R., Saenger, P., Theor. Appl. Genet. 2002, 104, 388-398.
31. Liepelt, S., Kuhlenkamp, V., Anzidei, M., Vendramin, G. G., Ziegenhagen, B., Mol. Ecol. Notes 2001, 1, 332-335.
32. Wang, W., Okazaki, K., Kishida, T., Fukuda, M., Tamaki, Y., Forensic Sci. Int. 1997, 86, 187-192.
33. Cryer, N. C., Fenn, M. G. E., Turnbull, C. J., Wilkinson, M. J., Genet. Resour. Crop Evol. 2006, 53, 1643-1652.