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Volumn 32, Issue 5, 2008, Pages 707-717

Structural Basis for DNA-Hairpin Promoter Recognition by the Bacteriophage N4 Virion RNA Polymerase

Author keywords

DNA

Indexed keywords

DOUBLE STRANDED DNA; RNA POLYMERASE;

EID: 56849089820     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcel.2008.11.010     Document Type: Article
Times cited : (41)

References (33)
  • 1
    • 0035799356 scopus 로고    scopus 로고
    • The T7 RNA polymerase intercalating hairpin is important for promoter opening during initiation but not for RNA displacement or transcription bubble stability during elongation
    • Brieba L.G., and Sousa R. The T7 RNA polymerase intercalating hairpin is important for promoter opening during initiation but not for RNA displacement or transcription bubble stability during elongation. Biochemistry 40 (2001) 3882-3890
    • (2001) Biochemistry , vol.40 , pp. 3882-3890
    • Brieba, L.G.1    Sousa, R.2
  • 3
    • 1142274214 scopus 로고    scopus 로고
    • Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms
    • Bushnell D.A., Westover K.D., Davis R.E., and Kornberg R.D. Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms. Science 303 (2004) 983-988
    • (2004) Science , vol.303 , pp. 983-988
    • Bushnell, D.A.1    Westover, K.D.2    Davis, R.E.3    Kornberg, R.D.4
  • 5
    • 0141595031 scopus 로고    scopus 로고
    • Phage N4 RNA polymerase II recruitment to DNA by a single-stranded DNA-binding protein
    • Carter R.H., Demidenko A.A., Hattingh-Willis S., and Rothman-Denes L.B. Phage N4 RNA polymerase II recruitment to DNA by a single-stranded DNA-binding protein. Genes Dev. 17 (2003) 2334-2345
    • (2003) Genes Dev. , vol.17 , pp. 2334-2345
    • Carter, R.H.1    Demidenko, A.A.2    Hattingh-Willis, S.3    Rothman-Denes, L.B.4
  • 6
    • 0014953125 scopus 로고
    • New RNA polymerase from Escherichia coli infected with bacteriophage T7
    • Chamberlin M., McGrath J., and Waskell L. New RNA polymerase from Escherichia coli infected with bacteriophage T7. Nature 228 (1970) 227-231
    • (1970) Nature , vol.228 , pp. 227-231
    • Chamberlin, M.1    McGrath, J.2    Waskell, L.3
  • 7
    • 0033529089 scopus 로고    scopus 로고
    • Structural basis for initiation of transcription from an RNA polymerase-promoter complex
    • Cheetham G.M., Jeruzalmi D., and Steitz T.A. Structural basis for initiation of transcription from an RNA polymerase-promoter complex. Nature 399 (1999) 80-83
    • (1999) Nature , vol.399 , pp. 80-83
    • Cheetham, G.M.1    Jeruzalmi, D.2    Steitz, T.A.3
  • 8
    • 42249109989 scopus 로고    scopus 로고
    • Insight into DNA and protein transport in double-stranded DNA viruses: the structure of bacteriophage N4
    • Choi K.H., McPartland J., Kaganman I., Bowman V.D., Rothman-Denes L.B., and Rossmann M.G. Insight into DNA and protein transport in double-stranded DNA viruses: the structure of bacteriophage N4. J. Mol. Biol. 378 (2008) 726-736
    • (2008) J. Mol. Biol. , vol.378 , pp. 726-736
    • Choi, K.H.1    McPartland, J.2    Kaganman, I.3    Bowman, V.D.4    Rothman-Denes, L.B.5    Rossmann, M.G.6
  • 9
    • 0032167802 scopus 로고    scopus 로고
    • Sequence and DNA structural determinants of N4 virion RNA polymerase-promoter recognition
    • Dai X., and Rothman-Denes L.B. Sequence and DNA structural determinants of N4 virion RNA polymerase-promoter recognition. Genes Dev. 12 (1998) 2782-2790
    • (1998) Genes Dev. , vol.12 , pp. 2782-2790
    • Dai, X.1    Rothman-Denes, L.B.2
  • 11
    • 0041923779 scopus 로고    scopus 로고
    • Escherichia coli single-stranded DNA-binding protein mediates template recycling during transcription by bacteriophage N4 virion RNA polymerase
    • Davydova E.K., and Rothman-Denes L.B. Escherichia coli single-stranded DNA-binding protein mediates template recycling during transcription by bacteriophage N4 virion RNA polymerase. Proc. Natl. Acad. Sci. USA 100 (2003) 9250-9255
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9250-9255
    • Davydova, E.K.1    Rothman-Denes, L.B.2
  • 12
    • 0346120332 scopus 로고    scopus 로고
    • Bacteriophage N4-coded, virion-encapsulated DNA-dependent RNA polymerase
    • Davydova E.K., Kazmierczak K.M., and Rothman-Denes L.B. Bacteriophage N4-coded, virion-encapsulated DNA-dependent RNA polymerase. Methods Enzymol. 370 (2003) 83-94
    • (2003) Methods Enzymol. , vol.370 , pp. 83-94
    • Davydova, E.K.1    Kazmierczak, K.M.2    Rothman-Denes, L.B.3
  • 13
    • 34249859167 scopus 로고    scopus 로고
    • Bacteriophage N4 virion RNA polymerase interaction with its promoter DNA hairpin
    • Davydova E.K., Santangelo T.J., and Rothman-Denes L.B. Bacteriophage N4 virion RNA polymerase interaction with its promoter DNA hairpin. Proc. Natl. Acad. Sci. USA 104 (2007) 7033-7038
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 7033-7038
    • Davydova, E.K.1    Santangelo, T.J.2    Rothman-Denes, L.B.3
  • 14
    • 0043102219 scopus 로고
    • Virion-associated RNA polymerase required for bacteriophage N4 development
    • Falco S.C., Laan K.V., and Rothman-Denes L.B. Virion-associated RNA polymerase required for bacteriophage N4 development. Proc. Natl. Acad. Sci. USA 74 (1977) 520-523
    • (1977) Proc. Natl. Acad. Sci. USA , vol.74 , pp. 520-523
    • Falco, S.C.1    Laan, K.V.2    Rothman-Denes, L.B.3
  • 17
    • 0026778136 scopus 로고
    • Specific sequences and a hairpin structure in the template strand are required for N4 virion RNA polymerase promoter recognition
    • Glucksmann M.A., Markiewicz P., Malone C., and Rothman-Denes L.B. Specific sequences and a hairpin structure in the template strand are required for N4 virion RNA polymerase promoter recognition. Cell 70 (1992) 491-500
    • (1992) Cell , vol.70 , pp. 491-500
    • Glucksmann, M.A.1    Markiewicz, P.2    Malone, C.3    Rothman-Denes, L.B.4
  • 19
    • 0022398465 scopus 로고
    • N4 virion RNA polymerase sites of transcription initiation
    • Haynes L.L., and Rothman-Denes L.B. N4 virion RNA polymerase sites of transcription initiation. Cell 41 (1985) 597-605
    • (1985) Cell , vol.41 , pp. 597-605
    • Haynes, L.L.1    Rothman-Denes, L.B.2
  • 20
    • 0032527832 scopus 로고    scopus 로고
    • Structure of T7 RNA polymerase complexed to the transcriptional inhibitor T7 lysozyme
    • Jeruzalmi D., and Steitz T.A. Structure of T7 RNA polymerase complexed to the transcriptional inhibitor T7 lysozyme. EMBO J. 17 (1998) 4101-4113
    • (1998) EMBO J. , vol.17 , pp. 4101-4113
    • Jeruzalmi, D.1    Steitz, T.A.2
  • 21
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones T.A., Zou J.Y., Cowan S.W., and Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47 (1991) 110-119
    • (1991) Acta Crystallogr. A , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 22
    • 0036846250 scopus 로고    scopus 로고
    • The phage N4 virion RNA polymerase catalytic domain is related to single-subunit RNA polymerases
    • Kazmierczak K.M., Davydova E.K., Mustaev A.A., and Rothman-Denes L.B. The phage N4 virion RNA polymerase catalytic domain is related to single-subunit RNA polymerases. EMBO J. 21 (2002) 5815-5823
    • (2002) EMBO J. , vol.21 , pp. 5815-5823
    • Kazmierczak, K.M.1    Davydova, E.K.2    Mustaev, A.A.3    Rothman-Denes, L.B.4
  • 23
    • 0021213358 scopus 로고
    • Theoretical studies on protein-nucleic acid interactions. III. Stacking of aromatic amino acids with bases and base pairs of nucleic acids
    • Kumar N.V., and Govil G. Theoretical studies on protein-nucleic acid interactions. III. Stacking of aromatic amino acids with bases and base pairs of nucleic acids. Biopolymers 23 (1984) 2009-2024
    • (1984) Biopolymers , vol.23 , pp. 2009-2024
    • Kumar, N.V.1    Govil, G.2
  • 24
    • 0027945504 scopus 로고
    • Release of the yeast mitochondrial RNA polymerase specificity factor from transcription complexes
    • Mangus D.A., Jang S.H., and Jaehning J.A. Release of the yeast mitochondrial RNA polymerase specificity factor from transcription complexes. J. Biol. Chem. 269 (1994) 26568-26574
    • (1994) J. Biol. Chem. , vol.269 , pp. 26568-26574
    • Mangus, D.A.1    Jang, S.H.2    Jaehning, J.A.3
  • 25
    • 0026705316 scopus 로고
    • Escherichia coli single-stranded DNA-binding protein is a supercoiled template-dependent transcriptional activator of N4 virion RNA polymerase
    • Markiewicz P., Malone C., Chase J.W., and Rothman-Denes L.B. Escherichia coli single-stranded DNA-binding protein is a supercoiled template-dependent transcriptional activator of N4 virion RNA polymerase. Genes Dev. 6 (1992) 2010-2019
    • (1992) Genes Dev. , vol.6 , pp. 2010-2019
    • Markiewicz, P.1    Malone, C.2    Chase, J.W.3    Rothman-Denes, L.B.4
  • 28
    • 0037123659 scopus 로고    scopus 로고
    • Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 Å resolution
    • Murakami K.S., Masuda S., and Darst S.A. Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 Å resolution. Science 296 (2002) 1280-1284
    • (2002) Science , vol.296 , pp. 1280-1284
    • Murakami, K.S.1    Masuda, S.2    Darst, S.A.3
  • 29
    • 42449112438 scopus 로고    scopus 로고
    • X-ray crystal structure of the polymerase domain of the bacteriophage N4 virion RNA polymerase
    • Murakami K.S., Davydova E.K., and Rothman-Denes L.B. X-ray crystal structure of the polymerase domain of the bacteriophage N4 virion RNA polymerase. Proc. Natl. Acad. Sci. USA 105 (2008) 5046-5051
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 5046-5051
    • Murakami, K.S.1    Davydova, E.K.2    Rothman-Denes, L.B.3
  • 30
    • 0031303334 scopus 로고    scopus 로고
    • Regions of the Escherichia coli primary sigma factor sigma70 that are involved in interaction with RNA polymerase core enzyme
    • Nagai H., and Shimamoto N. Regions of the Escherichia coli primary sigma factor sigma70 that are involved in interaction with RNA polymerase core enzyme. Genes Cells 2 (1997) 725-734
    • (1997) Genes Cells , vol.2 , pp. 725-734
    • Nagai, H.1    Shimamoto, N.2
  • 31
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Carter C.W. (Ed), Academic Press, San Diego, CA
    • Otwinowski Z., and Minor W. Processing of X-ray diffraction data collected in oscillation mode. In: Carter C.W. (Ed). Macromolecular Crystallography Part A, Methods in Enzymology, J (1997), Academic Press, San Diego, CA 307-326
    • (1997) Macromolecular Crystallography Part A, Methods in Enzymology, J , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 32
    • 0036308760 scopus 로고    scopus 로고
    • The intercalating beta-hairpin of T7 RNA polymerase plays a role in promoter DNA melting and in stabilizing the melted DNA for efficient RNA synthesis
    • Stano N.M., and Patel S.S. The intercalating beta-hairpin of T7 RNA polymerase plays a role in promoter DNA melting and in stabilizing the melted DNA for efficient RNA synthesis. J. Mol. Biol. 315 (2002) 1009-1025
    • (2002) J. Mol. Biol. , vol.315 , pp. 1009-1025
    • Stano, N.M.1    Patel, S.S.2
  • 33
    • 1342313235 scopus 로고    scopus 로고
    • The structural mechanism of translocation and helicase activity in T7 RNA polymerase
    • Yin Y.W., and Steitz T.A. The structural mechanism of translocation and helicase activity in T7 RNA polymerase. Cell 116 (2004) 393-404
    • (2004) Cell , vol.116 , pp. 393-404
    • Yin, Y.W.1    Steitz, T.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.