OrthoSearch: A scientific workflow approach to detect distant homologies on protozoans

Proceedings of the ACM Symposium on Applied Computing

Volumn , Issue , 2008, Pages 1282-1286

  Da Cruz, Sergio Manuel Serra ^a   Batista, Vanessa ^a   Dávila, Alberto M R ^b   Silva, Edno ^a   Tosta, Frederico ^a   Vilela, Clarissa ^a   Campos, Maria Luiza M ^a   Cuadrat, Rafael ^b   Tschoeke, Diogo ^b   Mattoso, Marta ^a  

^a FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^b INSTITUTO OSWALDO CRUZ   (Brazil)

Author keywords

Bioinformatics; Provenance; Scientific workflows

Indexed keywords

CASE STUDIES; DISTRIBUTED ENVIRONMENTS; INTEROPERATION; METABOLIC PATHWAYS; PERL SCRIPTS; PROVENANCE; SCIENTIFIC WORKFLOW; SCIENTIFIC WORKFLOWS; SCRIPT LANGUAGES; WORKFLOW MANAGEMENT SYSTEMS; WORKFLOWS;

BIOINFORMATICS; EXPERIMENTS; INFORMATION THEORY; PIPELINES; WORK SIMPLIFICATION;

MANAGEMENT;

EID: 56749104907     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1363686.1363983     Document Type: Conference Paper

References (13)

1. Altintas, L, et al. "Kepler: An Extensible System for Design and Execution of Scientific Workflows", In SSDBM, (2004), 423-424.
2. Altintas, L, et al. "A Framework for the Design and Reuse of Grid Workflows", In SAG'04, LNCS 3458, Springer (2005), 120-133.
3. Cruz, S. M. S., et al. "Monitoring Bioinformatics Web services Requests and Responses through a Log Based Architecture". In SEMISH (2005), 1787-1801.
4. Bowers, S., et al., "A Model for User-Oriented Data Provenance in Pipelined Scientific Workflows", In LNCS 4145, Springer, (2006), 133-147.
5. Cohen, S., Cohen-Boulakia, S., Davidson, S. B., "Towards a Model of Provenance and User Views in Scientific Workflows", In LNCS 4076, Springer (2006), 264-279.
6. Krauter, K., Buyya, R. and Maheswaran M., "A Taxonomy and Survey of Grid Resource Management Systems for Distributed Computing". Software: Practice and Experience, v. 32(2) (2002), 135-164.
7. Ludäscher, B., et al.. "Scientific workflow management and the Kepler system". Concur. Comput: Pract. Exper. v. 18(10) (2006), 1039-1065.
8. Oinn, T., et al., "Taverna: Lessons in creating a workflow environment for the life sciences". Concur. Comput.: Pract. Exper. V.18 (10) (2006), 1067-1100.
9. Stevens R., Zhao J., Goble C., "Using provenance to manage knowledge of in silico experiments". Brifings in Bioinformatics. v. 8 (2007), 183-194.
10. Simmhan Y. L., Piale B., Gannon D., "A Survey of Data Provenance in e-Science". ACM SIGMOD Record v. 34 (2005), 31-36.
11. Venugopal, S. Buyya, R. and Ramamohanarao. K., "A Taxonomy of Data Grids for Distributed Data Sharing, Management, and Processing". ACM Computing Surveys, v. 38 (2006), 1-53.
12. Yu, J. Buyya, R., "A taxonomy of scientific workflow systems for grid computing". ACM SIGMOD Record v.,34,(2005), 44 -49.
13. Zanikolas, S. Sakellariou R. "A taxonomy of grid monitoring systems". Future Generation Computer Systems v. 21(1) (2005), 163-188.