메뉴 건너뛰기




Volumn 24, Issue 23, 2008, Pages 2767-2772

The protein feature ontology: A tool for the unification of protein feature annotations

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ANALYTIC METHOD; ARTICLE; COMPUTER ANALYSIS; INTERMETHOD COMPARISON; MATHEMATICAL COMPUTING; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN MODIFICATION; PROTEIN PROCESSING; PROTEIN STRUCTURE;

EID: 56649124843     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn528     Document Type: Article
Times cited : (19)

References (28)
  • 1
    • 0034069495 scopus 로고    scopus 로고
    • Gene Ontology: Tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner,M. et al. (2000) Gene Ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29.
    • (2000) Nat. Genet , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 2
    • 38549134393 scopus 로고    scopus 로고
    • The Plant Ontology Database: A community resource for plant structure and developmental stages controlled vocabulary and annotations
    • Avraham,S. et al. (2008) The Plant Ontology Database: A community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic Acids Res., 36, D449-D454.
    • (2008) Nucleic Acids Res , vol.36
    • Avraham, S.1
  • 3
    • 27244457931 scopus 로고    scopus 로고
    • Research networks: BioSapiens: a European network for integrated genome annotation
    • BiosSaAiens
    • BiosSaAiens (2005) Research networks: BioSapiens: a European network for integrated genome annotation. Eur. J. Hum. Genet., 13, 994-997.
    • (2005) Eur. J. Hum. Genet , vol.13 , pp. 994-997
  • 4
    • 33644874168 scopus 로고    scopus 로고
    • dictyBase, the model organism database for Dictyostelium discoideum
    • Chisholm,R.L. et al. (2006) dictyBase, the model organism database for Dictyostelium discoideum. Nucleic Acids Res., 34, D423-D427.
    • (2006) Nucleic Acids Res , vol.34
    • Chisholm, R.L.1
  • 5
    • 9144256665 scopus 로고    scopus 로고
    • Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms
    • Christie,K.R. et al. (2004) Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Res., 32, D311-D314.
    • (2004) Nucleic Acids Res , vol.32
    • Christie, K.R.1
  • 6
    • 85142170723 scopus 로고    scopus 로고
    • Day-Richter,J. et al. (2007) OBO-Edit-an ontology editor for biologists. Bioinformatics, 23, 2198-2200.
    • Day-Richter,J. et al. (2007) OBO-Edit-an ontology editor for biologists. Bioinformatics, 23, 2198-2200.
  • 7
    • 2942547885 scopus 로고    scopus 로고
    • The distributed annotation system
    • Dowell,R.D. et al. (2001) The distributed annotation system. BMC bioinformatics, 2, 7.
    • (2001) BMC bioinformatics , vol.2 , pp. 7
    • Dowell, R.D.1
  • 9
    • 22044443709 scopus 로고    scopus 로고
    • The Sequence Ontology: A tool for the unification of genome annotations
    • Eilbeck,K. et al. (2005) The Sequence Ontology: A tool for the unification of genome annotations. Genome Biol., 6, R44.
    • (2005) Genome Biol , vol.6
    • Eilbeck, K.1
  • 10
    • 38549146894 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Finn,R.D. et al. (2008) The Pfam protein families database. Nucleic Acids Res., 36, D281-D288.
    • (2008) Nucleic Acids Res , vol.36
    • Finn, R.D.1
  • 11
    • 33644873681 scopus 로고    scopus 로고
    • FlyBase: Anatomical data, images and queries
    • Grumbling,G. and Strelets,V. (2006) FlyBase: Anatomical data, images and queries. Nucleic Acids Res., 34, D484-D488.
    • (2006) Nucleic Acids Res , vol.34
    • Grumbling, G.1    Strelets, V.2
  • 12
    • 35348976204 scopus 로고    scopus 로고
    • Broadening the horizon-level 2.5 of the HUPO-PSI format for molecular interactions
    • Kerrien,S. et al. (2007) Broadening the horizon-level 2.5 of the HUPO-PSI format for molecular interactions. BMC Biol., 5, 44.
    • (2007) BMC Biol , vol.5 , pp. 44
    • Kerrien, S.1
  • 13
    • 34547873510 scopus 로고    scopus 로고
    • Enhancing the functional annotation of PDB structures in PDBsum using key figures extracted from the literature
    • Laskowski,R.A. (2007) Enhancing the functional annotation of PDB structures in PDBsum using key figures extracted from the literature. Bioinformatics., 23, 1824-1827.
    • (2007) Bioinformatics , vol.23 , pp. 1824-1827
    • Laskowski, R.A.1
  • 14
    • 38549144166 scopus 로고    scopus 로고
    • The Genomes On Line Database (GOLD) in 2007: Status of genomic and metagenomic projects and their associated metadata
    • Liolios,K. et al. (2008) The Genomes On Line Database (GOLD) in 2007: Status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res., 36, D475-D479.
    • (2008) Nucleic Acids Res , vol.36
    • Liolios, K.1
  • 15
    • 49449097859 scopus 로고    scopus 로고
    • The PSI-MOD community standard for representation of protein modification data
    • Montecchi-Palazzi,L. et al. (2008) The PSI-MOD community standard for representation of protein modification data. Nat. Biotechnol. 26, 864-866.
    • (2008) Nat. Biotechnol , vol.26 , pp. 864-866
    • Montecchi-Palazzi, L.1
  • 16
    • 36549003965 scopus 로고    scopus 로고
    • InterPro and InterProScan: Tools for protein sequence classification and comparison
    • Mulder,N. and Apweiler,R. (2007) InterPro and InterProScan: Tools for protein sequence classification and comparison. Methods Mol. Biol. 396, 59-70.
    • (2007) Methods Mol. Biol , vol.396 , pp. 59-70
    • Mulder, N.1    Apweiler, R.2
  • 17
    • 34547844136 scopus 로고    scopus 로고
    • A Chado case study: An ontology-based modular schema for representing genome-associated biological information
    • Mungall,C.J. and Emmert,D.B. (2007) A Chado case study: An ontology-based modular schema for representing genome-associated biological information. Bioinformatics, 23, i337-i346.
    • (2007) Bioinformatics , vol.23
    • Mungall, C.J.1    Emmert, D.B.2
  • 18
    • 38449100150 scopus 로고    scopus 로고
    • Framework for a protein ontology
    • Natale,D.A. et al. (2007) Framework for a protein ontology. BMC Bioinformatics, 8 (Suppl. 9), S1.
    • (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 9
    • Natale, D.A.1
  • 19
    • 27544516284 scopus 로고    scopus 로고
    • Adding some SPICE to DAS
    • Prlic,A. et al. (2005) Adding some SPICE to DAS. Bioinformatics 21 (Suppl. 2), ii40-ii41.
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 2
    • Prlic, A.1
  • 20
    • 35349029801 scopus 로고    scopus 로고
    • Integrating sequence and structural biology with DAS
    • Prlic,A. et al. (2007) Integrating sequence and structural biology with DAS. BMC Bioinformatics, 8, 333.
    • (2007) BMC Bioinformatics , vol.8 , pp. 333
    • Prlic, A.1
  • 21
    • 33746391138 scopus 로고    scopus 로고
    • Integrating biological data through the genome
    • Reeves,G.A. and Thornton,J.M. (2006) Integrating biological data through the genome. Hum. Mol. Genet., 15, R81-R87.
    • (2006) Hum. Mol. Genet , vol.15
    • Reeves, G.A.1    Thornton, J.M.2
  • 22
    • 33745937504 scopus 로고    scopus 로고
    • Bioinformatics and its applications in plant biology
    • Rhee,S.Y. et al. (2006) Bioinformatics and its applications in plant biology. Annu. Rev. Plant Biol., 57, 335-360.
    • (2006) Annu. Rev. Plant Biol , vol.57 , pp. 335-360
    • Rhee, S.Y.1
  • 23
    • 38549146881 scopus 로고    scopus 로고
    • WormBase 2007
    • Rogers,A. et al. (2008) WormBase 2007. Nucleic Acids Res., 36, D612-D617.
    • (2008) Nucleic Acids Res , vol.36
    • Rogers, A.1
  • 24
    • 35948989284 scopus 로고    scopus 로고
    • The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration
    • Smith,B. et al. (2007) The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration. Nat. Biotechnol. 25, 1251-1255.
    • (2007) Nat. Biotechnol , vol.25 , pp. 1251-1255
    • Smith, B.1
  • 25
    • 38549118463 scopus 로고    scopus 로고
    • The Zebrafish Information Network: The zebrafish model organism database provides expanded support for genotypes and phenotypes
    • Sprague,J. et al. (2008) The Zebrafish Information Network: The zebrafish model organism database provides expanded support for genotypes and phenotypes, Nucleic Acids Res., 36, D768-D772.
    • (2008) Nucleic Acids Res , vol.36
    • Sprague, J.1
  • 26
    • 40849090414 scopus 로고    scopus 로고
    • Genome browsing with Ensembl: A practical overview
    • Spudich,G. et al. (2007) Genome browsing with Ensembl: A practical overview. Brief. Funct. Genomic. Proteomic., 6, 202-219.
    • (2007) Brief. Funct. Genomic. Proteomic , vol.6 , pp. 202-219
    • Spudich, G.1
  • 27
    • 84984996500 scopus 로고    scopus 로고
    • The Gene Ontology project in 2008
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium (2008) The Gene Ontology project in 2008. Nucleic Acids Res., 36, D440-D444.
    • (2008) Nucleic Acids Res , vol.36
  • 28
    • 33846111969 scopus 로고    scopus 로고
    • The Rat Genome Database, update 2007-easing the path from disease to data and back again
    • Twigger,S.N. et al. (2007) The Rat Genome Database, update 2007-easing the path from disease to data and back again. Nucleic Acids Res., 35, D658-D662.
    • (2007) Nucleic Acids Res , vol.35
    • Twigger, S.N.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.