Why biomedical relation extraction results are incomparable and what to do about it

3rd International Symposium on Semantic Mining in Biomedicine, SMBM 2008 - Proceedings

Volumn , Issue , 2008, Pages 149-152

  Pyysalo, Sampo ^a   Sætre, Rune ^b   Tsujii, Jun'ichi ^b   Salakoski, Tapio ^a  

^a UNIVERSITY OF TURKU   (Finland)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN-PROTEIN INTERACTIONS; RELATION EXTRACTION;

PROTEINS; SEMANTICS;

EXTRACTION;

EID: 56649123917     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (6)

1. Antti Airola, Sampo Pyysalo, Jari Björne, Tapio Pahikkala, Filip Ginter, and Tapio Salakoski. 2008. A graph kernel for protein-protein interaction extraction. In Proceedings of the BioNLP'08, pages 1-9.
2. Razvan C. Bunescu, Ruifang Ge, Rohit J. Kate, Edward M. Marcotte, Raymond J. Mooney, Arun Kumar Ramani, and Yuk Wah Wong. 2005. Comparative experiments on learning information extractors for proteins and their interactions. Artif Intell Med, 33(2):139-155.
3. Claudio Giuliano, Alberto Lavelli, and Lorenza Romano. 2006. Exploiting shallow linguistic information for relation extraction from biomedical literature. In Proceedings of EACL'06.
4. Claire Nédellec. 2005. Learning language in logic -genic interaction extraction challenge. In Proceedings of LLL'05.
5. Sampo Pyysalo, Antti Airola, Juho Heimonen, Jari Björne, Filip Ginter, and Tapio Salakoski. 2008. Comparative analysis of five protein-protein interaction corpora. BMC Bioinformatics, 9(Suppl 3):S6.
6. Rune Sætre, Kenji Sagae, and Jun'ichi Tsujii. 2008. Syntactic features for protein-protein interaction extraction. In Proceedings of LBM'07, volume 319, pages 6.1-6.14.