Real-time luminescence monitoring of cell-cycle and respiratory oscillations in yeast

Proceedings of the National Academy of Sciences of the United States of America

Volumn 105, Issue 46, 2008, Pages 17988-17993

  Robertson, J Brian ^a   Stowers, Chris C ^b   Boczko, Erik ^c   Johnson, Carl Hirschie ^a  

^a VANDERBILT UNIVERSITY   (United States)

^b VANDERBILT UNIVERSITY   (United States)

^c VANDERBILT UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

Circadian rhythms; Luciferase reporter; Metabolic cycle; Saccharomyces; Ultradian rhythms

Indexed keywords

FIREFLY LUCIFERASE;

ARTICLE; BREATHING PATTERN; CELL ACTIVITY; CELL CYCLE; CELL DIVISION; CELL RESPIRATION; CONTROLLED STUDY; NONHUMAN; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; SACCHAROMYCES CEREVISIAE;

ACETALDEHYDE; AEROBIOSIS; CELL CYCLE; ETHANOL; GENES, REPORTER; LUCIFERASES; LUMINESCENT MEASUREMENTS; OXYGEN; PROMOTER REGIONS, GENETIC; SACCHAROMYCES CEREVISIAE; TIME FACTORS;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE; SACCHAROMYCETALES;

EID: 56649123391     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0809482105     Document Type: Article

References (36)

1. Alon U (2006) in An Introduction to Systems Biology - Design Principles of Biological Circuits (Chapman & Hall/CRC, Boca Raton).
2. Dunlap JC, Loros JJ, DeCoursey PJ (2004) in Chronobiology: Biological Timekeeping (Sinauer, Sunderland, MA).
3. Brandes C, et al. (1996) Novel features of Drosophila period Transcription revealed by real-time luciferase reporting. Neuron 16:687-692.
4. Hastings JW, Johnson CH (2003) in Methods in Enzymology; Biophotonics, eds Mariott AG, Parker I (Academic, San Diego) pp 75-104.
5. Kondo T, et al. (1993) Circadian rhythms in prokaryotes: Luciferase as a reporter of circadian gene expression in cyanobacteria. Proc Natl Acad Sci USA 90:5672-5676.
6. Millar AJ, Short SR, Chua NH, Kay SA (1992) A novel circadian phenotype based on firefly luciferase expression in transgenic plants. Plant Cell 4:1075-1087.
7. Yamazaki S, et al. (2000) Resetting central and peripheral circadian oscillators in transgenic rats. Science 288:682-685.
8. Kondo T, et al. (1994) Circadian clock mutants of cyanobacteria. Science 266:1233-1236.
9. Millar AJ, Carré IA, Strayer CA, Chua NH, Kay SA (1995) Circadian clock mutants in Arabidopsis identified by luciferase imaging. Science 267:1161-1163.
10. Liu Y, et al. (1995) Circadian orchestration of gene expression in cyanobacteria. Genes Dev 9:1469-1478.
11. Michael TP, McClung CR (2003) Enhancer trapping reveals widespread circadian clock transcriptional control in Arabidopsis. Plant Physiol 132:629-639.
12. Gooch VD, et al. (2008) Fully codon-optimized luciferase uncovers novel temperature characteristics of the Neurospora clock. Eukaryot Cell 7:28-37.
13. Izumo M, Sato TR, Straume M, Johnson CH (2006) Quantitative analyses of circadian gene expression in mammalian cell cultures. PLoS Comput Biol 2:e136.
14. Mateus C, Avery SV (2000) Destabilized green fluorescent protein for monitoring dynamic changes in yeast gene expression with flow cytometry. Yeast 16:1313-1323.
15. Thompson JF, Hayes LS, Lloyd DB (1991) Modulation of firefly luciferase stability and impact on studies of gene regulation. Gene 103:171-177.
16. Huh W-K, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425:686-691.
17. Von Meyenburg K (1969) Energetics of the budding cycle of Saccharomyces cerevisiae during glucose limited aerobic growth. Arch Microbiol 66:289-303.
18. Klevecz RR, Bolen J, Forrest G, Murray DB (2004) A genomewide oscillation in transcription gates DNA replication and cell cycle. Proc Natl Acad Sci USA 101:1200-1205.
19. Martigani E, Porro D, Ranzi BM, Alberghina L (1990) Involvement of a cell size control mechanism in the induction and maintenance of oscillations in continuous cultures of budding yeast. Biotechnol Bioengin 36:453-459.
20. Tu BP, Kudlicki A, Rowicka M, McKnight SL (2005) Logic of the yeast metabolic cycle: Temporal compartmentalization of cellular processes. Science 310:1152-1158.
21. Xu Z, Tsurugi K (2006) A potential mechanism of energy-metabolism oscillations in an aerobic chemostat culture of the yeast Saccharomyces cerevisiae. FEBS J 273:1696-1709.
22. Porro D, Martegani E, Ranzi BM, Alberghina L (1988) Oscillations in continuous cultures of budding yeast: A segregated parameter analysis. Biotechnol Bioengineer 32:411-417.
23. Lloyd D (2006) The ultradian clock: Not to be confused with the cell cycle. Nat Rev Molec Cell Biol. Vol. 7, Dec. Online Correspondence.
24. Tu BP, Kudlicki A, Rowicka M, McKnight SL (2006) Let the data speak. Nat Rev Molec Cell Biol Vol. 7, Dec. Online Correspondence.
25. Asai M, et al. (2001) Visualization of mPer1 transcription in vitro: NMDA induces a rapid phase shift of mPer1 gene in cultured SCN. Curr Biol 11:1524-1527.
26. Beuse M, Bartling R, Kopmann A, Diekmann H, Thoma M (1998) Effect of dilution rate on the mode of oscillation in continuous cultures of Saccharomyces cerevisiae. J Biotech 61:15-31.
27. Satroutdinov AD, Kuriyama H, Kobayashi H (1992) Oscillatory metabolism of Saccharomyces cerevisiae in continuous culture. FEMS Microbiol Let 98:261-268.
28. Plevani P, et al. (1988) The yeast DNA polymerase-primase complex: Genes and proteins. Biochim Biophys Acta 951:268-273.
29. Verma R, Patapoutian A, Gordon CB, Campbell JL (1991) Identification and purification of a factor that binds to the Mlu I cell cycle box of yeast DNA replication genes. Proc Natl Acad Sci USA 88:7155-7159.
30. Murray DB, Roller S, Kuriyama H, Lloyd D (2001) Clock control of ultradian respiratory oscillation found during yeast continuous culture. J Bacteriol 183:7253-7259.
31. Murray DB, Klevecz RR, Lloyd D (2003) Generation and maintenance of synchrony in Saccharomyces cerevisiae continuous culture. Exp Cell Res 287:10-15.
32. Hastings JW, McElroy WD, Coulombre J (1953) The effect of oxygen upon the immobilization reaction in firefly luminescence. J Cell Physiol 42:137-150.
33. Moriyama EH, et al. (2008) The influence of hypoxia on bioluminescence in luciferase-transfected gliosarcoma tumor cells in vitro. Photochem Photobiol Sci 6:675-680.
34. Spellman PT, et al. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell 9:3273-3297.
35. Wittenberg C, Sugimoto K, Reed SI (1990) G1-specific cyclins of S. cerevisiae: Cell cycle periodicity, regulation by mating pheromone, and association with the p34CDC28 protein kinase. Cell 62:225-237.
36. Brauer MJ, et al. (2008) Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast. Mol Biol Cell 19:352-367.