Genotype sequence segmentation: Handling constraints and noise

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 5251 LNBI, Issue , 2008, Pages 271-283

  Zhang, Qi ^a   Wang, Wei ^a   McMillan, Leonard ^a   Prins, Jan ^a   Pardo Manuel De Villena, Fernando ^a   Threadgill, David ^a  

^a UNIVERSITY OF NORTH CAROLINA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DYNAMIC PROGRAMMING ALGORITHMS; GENE CONVERSIONS; GENETIC BASIS; GENETIC VARIATIONS; GENOMIC SEQUENCES; GENOTYPING ERRORS; HANDLING CONSTRAINTS; HAPLOTYPES; MISSING VALUES; NOISY DATUMS; POINT MUTATIONS; POLYNOMIAL TIMES;

ALGORITHMS; BIOINFORMATICS; GENETIC PROGRAMMING; PLANTS (BOTANY); POLYNOMIAL APPROXIMATION; SYSTEMS ENGINEERING; TECHNICAL PRESENTATIONS;

POPULATION STATISTICS;

EID: 56649114261     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-87361-7_23     Document Type: Conference Paper

References (11)

1. Churchill, G.A., et al.: The Collaborative Cross, a community resource for the genetic analysis of complex traits. Nat. Genet. 36, 1133-1137 (2002)
2. Dally, M., Rioux, J., Schaffner, S.F., Hudson, T., Lander, E.: High-resolution haplotype structure in the human genome. Nat. Genet. 29, 229-232 (2001)
3. Gusfield, D.: Haplotyping as perfect phylogeny: conceptual framework and efficient solutions. In: RECOMB, pp. 166-175 (2002)
4. Gusfield, D., Eddhu, S., Langley, C: Optimal, efficient reconstruction of phylogenetic networks with constrained recombination. J. Bioinf. Comput. Biol. 2, 173-213 (2004)
5. Gabriel, S.B., Schaffner, S.F., Nguyen, H., Moore, et al.: The structure of haplotype blocks in the human genome. Science 296, 2225-2229 (2002)
6. Schwartz, R., Halldorson, B.V., Bafna, V., Clark, A.G., Istrail, S.: Robustness of inference of haplotyp block structure. J. Comput. Biol. 10, 13-19 (2003)
7. Threadgill, D.W., Hunter, K.W., Williams, R.W.: Genetic dissection of complex and quantitative traits: from fantasy to reality via a community effort. Mamm Genome 13, 175-178 (2002)
8. Ukkonen, E.: Finding founder sequences from a set of recombinants. In: Guigó, R., Gusfield, D. (eds.) WABI 2002. LNCS, vol. 2452, pp. 277-286. Springer, Heidelberg (2002)
9. Valdar, W., Flint, J., Mott, R.: Simulating the Collaborative Cross: Power of Quantitative Trait Loci Detection and Mapping Resolution in Large Sets of Recombinant inbred Strains of Mice. Genetics 172(3), 1783-1797 (2006)
10. Wu, Y., Gusfield, D.: Improved algorithms for inferring the minimum mosaic of a set of recombinants. In: Ma, B., Zhang, K. (eds.) CPM 2007. LNCS, vol. 4580, pp. 150-161. Springer, Heidelberg (2007)
11. Zhang, Q., Wang, W., McMillan, L., Prins, J., Villena, F.P., Threadgill, D.: Genotype Sequence Segmentation: Handling Constraints and Noise. UNO Tech. Report (2008)