IPEP: An in silico tool to examine proteolytic peptides for mass spectrometry

Bioinformatics

Volumn 24, Issue 23, 2008, Pages 2801-2802

  Lu, Dihui ^a   Liu, Richard Z ^a   Izumi, Victoria ^a   Fenstermacher, David ^a   Haura, Eric B ^a   Koomen, John ^a   Eschrich, Steven A ^a  

^a H LEE MOFFITT CANCER CENTER AND RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MITOGEN ACTIVATED PROTEIN KINASE; PEPTIDE; PROTEINASE;

AMINO ACID SEQUENCE; ARTICLE; COMPUTER MODEL; COMPUTER PROGRAM; FUNCTIONAL PROTEOMICS; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DEGRADATION; PROTEIN PROCESSING; SEQUENCE ANALYSIS; TANDEM MASS SPECTROMETRY; WEB BROWSER;

EID: 56649106671     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn511     Document Type: Article

References (5)

1. Cagney,G. et al. (2003) In silico proteome analysis to facilitate proteomics experiments using mass spectrometry. Proteome Sci., 1, 5.
2. Fischer,F. et al. (2006) Toward the complete membrane proteome: high coverage of integral membrane proteins through transmembrane peptide detection. Mol. Cell Proteomics, 5, 444-453.
3. Hulo,N. et al. (2006) The PROSITE database. Nucleic Acids Res. 34, D227-D230.
4. Norbeck,A.D. et al. (2005) The utility of accurate mass and LC elution time information in the analysis of complex proteomes. J. Am. Soc. Mass Spectrom., 16, 1239-1249.
5. Sun,H. et al. (2006) GOFFA: Gene Ontology For Functional Analysis - a FDA Gene Ontology tool for analysis of genomic and proteomic data. BMC Bioinformatics, 7 (Suppl. 2), S23.