메뉴 건너뛰기




Volumn 5251 LNBI, Issue , 2008, Pages 186-197

An automated combination of kernels for predicting protein subcellular localization

Author keywords

[No Author keywords available]

Indexed keywords

AMINES; AMINO ACIDS; BIOINFORMATICS; FORECASTING; IMAGE SEGMENTATION; MULTILAYER NEURAL NETWORKS; OPEN SYSTEMS; ORGANIC ACIDS; TECHNICAL PRESENTATIONS; VECTORS;

EID: 56649094293     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-87361-7_16     Document Type: Conference Paper
Times cited : (17)

References (25)
  • 2
    • 0141515750 scopus 로고    scopus 로고
    • Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs
    • Park, K.J., Kanehisa, M.: Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs. Bioinformatics 19(13), 1656-1663 (2003)
    • (2003) Bioinformatics , vol.19 , Issue.13 , pp. 1656-1663
    • Park, K.J.1    Kanehisa, M.2
  • 3
    • 27744493876 scopus 로고    scopus 로고
    • TARGET: A new method for predicting protein subcellular localization in eukaryotes
    • Guda, C., Subramaniam, S.: TARGET: a new method for predicting protein subcellular localization in eukaryotes. Bioinformatics 21(21), 3963-3969 (2005)
    • (2005) Bioinformatics , vol.21 , Issue.21 , pp. 3963-3969
    • Guda, C.1    Subramaniam, S.2
  • 4
    • 1942505330 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins for gram-negative bacteria by support vector machines based on n-peptide compositions
    • Yu, C.-S., Lin, C.-J., Hwang, J.-K.: Predicting subcellular localization of proteins for gram-negative bacteria by support vector machines based on n-peptide compositions. Protein Science 13, 1402-1406 (2004)
    • (2004) Protein Science , vol.13 , pp. 1402-1406
    • Yu, C.-S.1    Lin, C.-J.2    Hwang, J.-K.3
  • 5
    • 15844431346 scopus 로고    scopus 로고
    • PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
    • Gardy, J.L., Laird, M.R., Chen, F., Rey, S., Walsh, C.J., Ester, M., Brinkman, F.S.L.: PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis. Bioinfomatics 21, 617-623 (2004)
    • (2004) Bioinfomatics , vol.21 , pp. 617-623
    • Gardy, J.L.1    Laird, M.R.2    Chen, F.3    Rey, S.4    Walsh, C.J.5    Ester, M.6    Brinkman, F.S.L.7
  • 7
    • 23144461988 scopus 로고    scopus 로고
    • LOCSVMPSI: A web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST
    • Xie, D., Li, A., Wang, M., Fan, Z., Feng, H.: LOCSVMPSI: a web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST. Nucleic Acids Research 33, W105-W110 (2005)
    • (2005) Nucleic Acids Research , vol.33
    • Xie, D.1    Li, A.2    Wang, M.3    Fan, Z.4    Feng, H.5
  • 8
    • 17644389617 scopus 로고    scopus 로고
    • Support vector machine-based method for subcellular localization of human proteins using amino acid composition, their order, and similarity search
    • Garg, A., Bhasin, M., Raghava, G.P.S.: Support vector machine-based method for subcellular localization of human proteins using amino acid composition, their order, and similarity search. The Journal of Biological Chemistry 280(15), 14427-14432 (2005)
    • (2005) The Journal of Biological Chemistry , vol.280 , Issue.15 , pp. 14427-14432
    • Garg, A.1    Bhasin, M.2    Raghava, G.P.S.3
  • 11
    • 0032077533 scopus 로고    scopus 로고
    • Using neural networks for prediction of the subcellular location of proteins
    • Reinhardt, A., Hubbard, T.: Using neural networks for prediction of the subcellular location of proteins. Nucleic Acids Research 26, 2230-2236 (1998)
    • (1998) Nucleic Acids Research , vol.26 , pp. 2230-2236
    • Reinhardt, A.1    Hubbard, T.2
  • 12
    • 2942513121 scopus 로고    scopus 로고
    • Esub8: A novel tool to predict protein subcellular localizations in eukaryotic organisms
    • Cui, Q., Jiang, T., Liu, B., Ma, S.: Esub8: A novel tool to predict protein subcellular localizations in eukaryotic organisms. BMC Bioinformatics 5(66) (2004)
    • (2004) BMC Bioinformatics , vol.5 , Issue.66
    • Cui, Q.1    Jiang, T.2    Liu, B.3    Ma, S.4
  • 13
    • 84862630897 scopus 로고    scopus 로고
    • Hilbertian metrics and positive definite kernels on probability measures
    • Cowell, R, Ghahramani, Z, eds
    • Hein, M., Bousquet, O.: Hilbertian metrics and positive definite kernels on probability measures. In: Cowell, R., Ghahramani, Z. (eds.) Proceedings of AISTATS 2005, pp. 136-143 (2005)
    • (2005) Proceedings of AISTATS , pp. 136-143
    • Hein, M.1    Bousquet, O.2
  • 16
    • 0027657329 scopus 로고
    • Semi-Infinite Programming: Theory, Methods, and Applications
    • Hettich, R., Kortanek, K.O.: Semi-Infinite Programming: Theory, Methods, and Applications. SIAM Review 35(3), 380-429 (1993)
    • (1993) SIAM Review , vol.35 , Issue.3 , pp. 380-429
    • Hettich, R.1    Kortanek, K.O.2
  • 17
    • 33747496466 scopus 로고    scopus 로고
    • Structured multicategory support vector machines with analysis of variance decomposition
    • Lee, Y., Kim, Y., Lee, S., Koo, J.-Y: Structured multicategory support vector machines with analysis of variance decomposition. Biometrika 93(3), 555-571 (2006)
    • (2006) Biometrika , vol.93 , Issue.3 , pp. 555-571
    • Lee, Y.1    Kim, Y.2    Lee, S.3    Koo, J.-Y.4
  • 18
    • 45149115870 scopus 로고    scopus 로고
    • Improved functional prediction of proteins by learning kernel combinations in multilabel settings
    • Roth, V., Fischer, B.: Improved functional prediction of proteins by learning kernel combinations in multilabel settings. BMC Bioinformatics 8 (suppl. 2), 12 (2007)
    • (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 2 , pp. 12
    • Roth, V.1    Fischer, B.2
  • 19
    • 0036891705 scopus 로고    scopus 로고
    • Sequence conserved for subcellular localization
    • Nair, R., Rost, B.: Sequence conserved for subcellular localization. Protein Science 11, 2836-2847 (2002)
    • (2002) Protein Science , vol.11 , pp. 2836-2847
    • Nair, R.1    Rost, B.2
  • 22
    • 0034697980 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
    • Emanuelsson, O., Nielsen, H., Brunak, S., von Heijne, G.: Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. Journal of Molecular Biology 300, 1005-1016(2000)
    • (2000) Journal of Molecular Biology , vol.300 , pp. 1005-1016
    • Emanuelsson, O.1    Nielsen, H.2    Brunak, S.3    von Heijne, G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.