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Volumn 9, Issue , 2008, Pages

Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTOME; COMPLEMENTARY RNA; PLANT RNA;

EID: 56349148789     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-475     Document Type: Article
Times cited : (23)

References (70)
  • 4
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • 7569999 7569999 10.1126/science.270.5235.467
    • Schena M Shalon D Davis RW Brown PO Quantitative monitoring of gene expression patterns with a complementary DNA microarray Science 1995, 270:467-470. 7569999 7569999 10.1126/science.270.5235.467
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 5
    • 0028873712 scopus 로고
    • Nuclear-DNA amounts in angiosperms
    • 10.1006/anbo.1995.1085
    • Bennett MD Leitch IJ Nuclear-DNA amounts in angiosperms Ann Bot 1995, 76:113-176. 10.1006/anbo.1995.1085
    • (1995) Ann Bot , vol.76 , pp. 113-176
    • Bennett, M.D.1    Leitch, I.J.2
  • 7
    • 84966167399 scopus 로고
    • Repeated and non-repeated nucleotide sequences in diploid and polyploid wheat species
    • 10.1038/hdy.1973.80
    • Mitra R Bhatia CR Repeated and non-repeated nucleotide sequences in diploid and polyploid wheat species Heredity 1973, 31:251-262. 10.1038/ hdy.1973.80
    • (1973) Heredity , vol.31 , pp. 251-262
    • Mitra, R.1    Bhatia, C.R.2
  • 9
    • 34249710284 scopus 로고    scopus 로고
    • Measuring global gene expression in polyploidy; a cautionary note from allohexaploid wheat
    • 17364174 17364174 10.1007/s10142-007-0046-7
    • Poole R Barker G Coghill J Wilson I Edwards K Measuring global gene expression in polyploidy; a cautionary note from allohexaploid wheat Funct Integr Genomics 2007, 7:207-219. 17364174 17364174 10.1007/ s10142-007-0046-7
    • (2007) Funct Integr Genomics , vol.7 , pp. 207-219
    • Poole, R.1    Barker, G.2    Coghill, J.3    Wilson, I.4    Edwards, K.5
  • 10
    • 0028789793 scopus 로고
    • Serial Analysis of Gene Expression
    • 7570003 10.1126/science.270.5235.484
    • Velculescu VE Zhang L Vogelstein B Kinzler KW Serial Analysis of Gene Expression Science 1995, 270:484-487. 7570003 7570003 10.1126/ science.270.5235.484
    • (1995) Science , vol.270 , pp. 484-487
    • Velculescu, V.E.1    Zhang, L.2    Vogelstein, B.3    Kinzler, K.W.4
  • 12
    • 27744588362 scopus 로고    scopus 로고
    • Global transcript profiling of potato tuber using LongSAGE
    • 17173618 10.1111/j.1467-7652.2005.00115.x
    • Nielsen KL Grønkjær K Welinder KG Emmersen J Global transcript profiling of potato tuber using LongSAGE Plant Biotech J 2005, 3:175-185. 17173618 10.1111/j.1467-7652.2005.00115.x
    • (2005) Plant Biotech J , vol.3 , pp. 175-185
    • Nielsen, K.L.1    Grønkjær, K.2    Welinder, K.G.3    Emmersen, J.4
  • 14
    • 33645501721 scopus 로고    scopus 로고
    • Abundant transcripts of malting barley identified by Serial Analysis of Gene Expression (SAGE)
    • 10.1111/j.1467-7652.2006.00181.x
    • White J Pacey-Miller T Crawford A Cordeiro G Barbary D Bundock P Henry R Abundant transcripts of malting barley identified by Serial Analysis of Gene Expression (SAGE) Plant Biotech J 2006, 4:289-301. 17147635 10.1111/ j.1467-7652.2006.00181.x
    • (2006) Plant Biotech J , vol.4 , pp. 289-301
    • White, J.1    Pacey-Miller, T.2    Crawford, A.3    Cordeiro, G.4    Barbary, D.5    Bundock, P.6    Henry, R.7
  • 15
    • 33947140919 scopus 로고    scopus 로고
    • 4 metabolism and putative antisense transcripts
    • 17211512 17211512 10.1007/s11103-006-9121-z
    • 4 metabolism and putative antisense transcripts Plant Mol Biol 2007, 63:745-762. 17211512 17211512 10.1007/s11103-006-9121-z
    • (2007) Plant Mol Biol , vol.63 , pp. 745-762
    • Calsa, T.1    Figueira, A.2
  • 17
    • 4744376550 scopus 로고    scopus 로고
    • A comparison of gene expression profiles produced by SAGE, long SAGE and oligonucleotide chips
    • 15475240 15475240 10.1016/j.ygeno.2004.06.014
    • Lu J Lal A Merriman B Nelson S Riggins G A comparison of gene expression profiles produced by SAGE, long SAGE and oligonucleotide chips Genomics 2004, 84:631-363. 15475240 15475240 10.1016/j.ygeno.2004.06.014
    • (2004) Genomics , vol.84 , pp. 363-631
    • Lu, J.1    Lal, A.2    Merriman, B.3    Nelson, S.4    Riggins, G.5
  • 18
    • 15444364810 scopus 로고    scopus 로고
    • Maximising the efficacy of SAGE analysis identifies novel transcripts in Arabidopsis
    • Robinson SJ Cram DJ Lewis CT Parkin IAP Maximising the efficacy of SAGE analysis identifies novel transcripts in Arabidopsis Bioinformatics 2004, 136:3223-3233.
    • (2004) Bioinformatics , vol.136 , pp. 3223-3233
    • Robinson, S.J.1    Cram, D.J.2    Lewis, C.T.3    Parkin, I.A.P.4
  • 20
    • 4143148653 scopus 로고    scopus 로고
    • 5′ Long serial analysis of gene expression (LongSAGE) and 3′ LongSAGE for transcriptome characterization and genome annotation
    • 15272081 15272081 511040 10.1073/pnas.0403514101
    • Wei C-L Ng P Chiu KP Wong CH Ang CC Lipovich L Liu ET Ruan Y 5′ Long serial analysis of gene expression (LongSAGE) and 3′ LongSAGE for transcriptome characterization and genome annotation Proc Natl Acad Sci USA 2004, 101:11701-11706. 15272081 15272081 511040 10.1073/ pnas.0403514101
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 11701-11706
    • Wei, C.-L.1    Ng, P.2    Chiu, K.P.3    Wong, C.H.4    Ang, C.C.5    Lipovich, L.6    Liu, E.T.7    Ruan, Y.8
  • 21
    • 17444416148 scopus 로고    scopus 로고
    • LongSAGE analysis significantly improves genome annotation: Identifications of novel genes and alternative transcripts in the mouse
    • 15591356 15591356 10.1093/bioinformatics/bti207
    • Wahl MB Heinzmann U Imai K LongSAGE analysis significantly improves genome annotation: Identifications of novel genes and alternative transcripts in the mouse Bioinformatics 2005, 21:1393-1400. 15591356 15591356 10.1093/bioinformatics/bti207
    • (2005) Bioinformatics , vol.21 , pp. 1393-1400
    • Wahl, M.B.1    Heinzmann, U.2    Imai, K.3
  • 22
    • 0037401404 scopus 로고    scopus 로고
    • Effects of restricted water availability and increased temperature on the grain filling, drying and quality of winter wheat
    • 10.1006/jcrs.2002.0501
    • Gooding MJ Ellis RH Shewry PR Schofield JD Effects of restricted water availability and increased temperature on the grain filling, drying and quality of winter wheat J Cereal Sci 2003, 37:295-309. 10.1006/ jcrs.2002.0501
    • (2003) J Cereal Sci , vol.37 , pp. 295-309
    • Gooding, M.J.1    Ellis, R.H.2    Shewry, P.R.3    Schofield, J.D.4
  • 23
    • 33847278917 scopus 로고    scopus 로고
    • Transcriptional profiling of wheat caryopsis development using cDNA microarrays
    • 17211515 17211515 10.1007/s11103-006-9114-y
    • Laudencia-Chingcuanco DL Stamova BS You FM Lazo GR Beckles DM Anderson OD Transcriptional profiling of wheat caryopsis development using cDNA microarrays Plant Mol Biol 2007, 63:651-668. 17211515 17211515 10.1007/ s11103-006-9114-y
    • (2007) Plant Mol Biol , vol.63 , pp. 651-668
    • Laudencia-Chingcuanco, D.L.1    Stamova, B.S.2    You, F.M.3    Lazo, G.R.4    Beckles, D.M.5    Anderson, O.D.6
  • 24
    • 33744547992 scopus 로고    scopus 로고
    • Transcriptome analysis reveals differentially expressed storage protein transcripts in seeds of Aegilops and wheat
    • 10.1016/j.jcs.2006.04.004
    • Kan Y Wan Y Beaudoin F Leader DJ Edwards K Poole R Wang D Mitchell RAC Shewry PR Transcriptome analysis reveals differentially expressed storage protein transcripts in seeds of Aegilops and wheat J Cereal Sci 2006, 44:75-85. 10.1016/j.jcs.2006.04.004
    • (2006) J Cereal Sci , vol.44 , pp. 75-85
    • Kan, Y.1    Wan, Y.2    Beaudoin, F.3    Leader, D.J.4    Edwards, K.5    Poole, R.6    Wang, D.7    Mitchell, R.A.C.8    Shewry, P.R.9
  • 25
    • 20444498682 scopus 로고    scopus 로고
    • Alteration of the embryo transcriptome of hexaploid winter wheat (Triticum aestivum cv. Mercia) during maturation and germination
    • 10.1007/s10142-005-0137-2 15714317
    • Wilson ID Barker GLA Lu C Coghill JA Beswick RW Lenton J Edwards KJ Alteration of the embryo transcriptome of hexaploid winter wheat (Triticum aestivum cv. Mercia) during maturation and germination Funct Integr Genomics 2005, 5:144-154. 10.1007/s10142-005-0137-2 15714317
    • (2005) Funct Integr Genomics , vol.5 , pp. 144-154
    • Wilson, I.D.1    Barker, G.L.A.2    Lu, C.3    Coghill, J.A.4    Beswick, R.W.5    Lenton, J.6    Edwards, K.J.7
  • 26
    • 1342311966 scopus 로고    scopus 로고
    • Transcript profiles and deduced changes of metabolic pathways in maternal and filial tissues of developing barley grains
    • 14756762 14756762 10.1046/j.1365-313X.2003.01981.x
    • Sreenivasulu N Altschmied L Radchuk V Gubatz S Wobus U Wescheke W Transcript profiles and deduced changes of metabolic pathways in maternal and filial tissues of developing barley grains Plant J 2004, 37:539-553. 14756762 14756762 10.1046/j.1365-313X.2003.01981.x
    • (2004) Plant J , vol.37 , pp. 539-553
    • Sreenivasulu, N.1    Altschmied, L.2    Radchuk, V.3    Gubatz, S.4    Wobus, U.5    Wescheke, W.6
  • 27
    • 0036120855 scopus 로고    scopus 로고
    • Environmental conditions during wheat grain development alter temporal regulation of major glutein protein genes
    • 10.1094/CCHEM.2002.79.2.279
    • Altenbach SB Kothari KM Lieu D Environmental conditions during wheat grain development alter temporal regulation of major glutein protein genes Cereal Chem 2002, 79:279-285. 10.1094/CCHEM.2002.79.2.279
    • (2002) Cereal Chem , vol.79 , pp. 279-285
    • Altenbach, S.B.1    Kothari, K.M.2    Lieu, D.3
  • 28
    • 0037217185 scopus 로고    scopus 로고
    • Temperature, water and fertilizer influence the timing of key events during grain development in a US spring wheat
    • 10.1006/jcrs.2002.0483
    • Altenbach SB DuPont F Kothari KM Chan R Johnson E Lieu D Temperature, water and fertilizer influence the timing of key events during grain development in a US spring wheat J Cereal Sci 2003, 37:9-20. 10.1006/ jcrs.2002.0483
    • (2003) J Cereal Sci , vol.37 , pp. 9-20
    • Altenbach, S.B.1    DuPont, F.2    Kothari, K.M.3    Chan, R.4    Johnson, E.5    Lieu, D.6
  • 29
    • 36749081620 scopus 로고    scopus 로고
    • The effect of drought and heat stress on reproductive success in cereals
    • Barnabás B Jäger K Fehér A The effect of drought and heat stress on reproductive success in cereals Plant Cell Envir 2008, 31:11-38.
    • (2008) Plant Cell Envir , vol.31 , pp. 11-38
    • Barnabás, B.1    Jäger, K.2    Fehér, A.3
  • 30
    • 56349085432 scopus 로고    scopus 로고
    • NCBI UniGenes http://www.ncbi.nlm.nih.gov/sites/entrez?db=unigene
    • NCBI UniGenes
  • 33
    • 33751224464 scopus 로고    scopus 로고
    • Accurate and unambiguous tag-to-gene mapping in serial analysis of gene expression
    • 17083742 17083742 1637119 10.1186/1471-2105-7-487
    • Malig R Varela C Agosin E Melo F Accurate and unambiguous tag-to-gene mapping in serial analysis of gene expression BMC Bioinformatics 2006, 7:487. 17083742 17083742 1637119 10.1186/1471-2105-7-487
    • (2006) BMC Bioinformatics , vol.7 , pp. 487
    • Malig, R.1    Varela, C.2    Agosin, E.3    Melo, F.4
  • 34
    • 26444504963 scopus 로고    scopus 로고
    • SuperSAGE combined with PCR walking allows global gene expression profiling of banana (Musa acuminata), a non-model organism
    • 16133315 16133315 10.1007/s00122-005-0039-7
    • Coemans B Matsumura H Terauchi R Remy S Swennen R Sági L SuperSAGE combined with PCR walking allows global gene expression profiling of banana (Musa acuminata), a non-model organism Theor Appl Genet 2005, 111:1118-1126. 16133315 16133315 10.1007/s00122-005-0039-7
    • (2005) Theor Appl Genet , vol.111 , pp. 1118-1126
    • Coemans, B.1    Matsumura, H.2    Terauchi, R.3    Remy, S.4    Swennen, R.5    Sági, L.6
  • 35
    • 56349124562 scopus 로고    scopus 로고
    • Wheatbp http://www.wheatbp.net
    • Wheatbp
  • 36
    • 0037126025 scopus 로고    scopus 로고
    • Identifying novel transcripts and novel genes in the human genome by using novel SAGE tags
    • 12213963 12213963 129432 10.1073/pnas.192436499
    • Chen J Sun M Lee S Zhou G Rowley JD Wang SM Identifying novel transcripts and novel genes in the human genome by using novel SAGE tags Proc Natl Acad Sci USA 2002, 99:12257-12262. 12213963 12213963 129432 10.1073/pnas.192436499
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 12257-12262
    • Chen, J.1    Sun, M.2    Lee, S.3    Zhou, G.4    Rowley, J.D.5    Wang, S.M.6
  • 37
    • 11144333773 scopus 로고    scopus 로고
    • Virtual-SAGE: A new approach to EST data analysis
    • 15449547 15449547 10.1093/dnares/11.2.145
    • Poroyko V Calugaru V Fredricksen M Bohnert HJ Virtual-SAGE: A new approach to EST data analysis DNA Res 2004, 11:145-152. 15449547 15449547 10.1093/dnares/11.2.145
    • (2004) DNA Res , vol.11 , pp. 145-152
    • Poroyko, V.1    Calugaru, V.2    Fredricksen, M.3    Bohnert, H.J.4
  • 38
    • 34249810022 scopus 로고    scopus 로고
    • Unexpected observations after mapping LongSAGE tags to the human genome
    • 17504516 17504516 1884178 10.1186/1471-2105-8-154
    • Keime C Sémon M Mouchiroud D Duret L Gandrillon O Unexpected observations after mapping LongSAGE tags to the human genome BMC Bioinformatics 2007, 8:154. 17504516 17504516 1884178 10.1186/ 1471-2105-8-154
    • (2007) BMC Bioinformatics , vol.8 , pp. 154
    • Keime, C.1    Sémon, M.2    Mouchiroud, D.3    Duret, L.4    Gandrillon, O.5
  • 40
    • 0036010779 scopus 로고    scopus 로고
    • Puroindolines: The molecular genetic basis of wheat grain hardness
    • 10.1023/A:1014837431178 11999840
    • Morris CF Puroindolines: The molecular genetic basis of wheat grain hardness Plant Mol Biol 2002, 48;633-647. 10.1023/A:1014837431178 11999840
    • (2002) Plant Mol Biol , vol.48 , pp. 633-647
    • Morris, C.F.1
  • 42
    • 38549121372 scopus 로고    scopus 로고
    • Molecular genetics of puroindolines and related genes: Regulation of expression, membrane binding properties and applications
    • 18049797 18049797 10.1007/s11103-007-9264-6
    • Bhave M Morris CF Molecular genetics of puroindolines and related genes: regulation of expression, membrane binding properties and applications Plant Mol Biol 2008, 66:221-231. 18049797 18049797 10.1007/ s11103-007-9264-6
    • (2008) Plant Mol Biol , vol.66 , pp. 221-231
    • Bhave, M.1    Morris, C.F.2
  • 43
    • 0028406286 scopus 로고
    • Triticum aestivum puroindolines, two basic cystine-rich seed proteins: cDNA sequence analysis and developmental gene expression
    • 7516201 7516201 10.1007/BF00024197
    • Gautier MF Aleman ME Guirao A Marion D Joudrier P Triticum aestivum puroindolines, two basic cystine-rich seed proteins: cDNA sequence analysis and developmental gene expression Plant Mol Biol 1994, 25:43-57. 7516201 7516201 10.1007/BF00024197
    • (1994) Plant Mol Biol , vol.25 , pp. 43-57
    • Gautier, M.F.1    Aleman, M.E.2    Guirao, A.3    Marion, D.4    Joudrier, P.5
  • 44
    • 33845622065 scopus 로고    scopus 로고
    • Both introns and long 3′-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants
    • 17088291 10.1093/nar/gkl737
    • Kertész S Kerényi Z Mérai Z Bartos I Pálfy T Barta E Silhavy D Both introns and long 3′-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants Nucleic Acids Res 2006, 34:6146-6157. 17088291 10.1093/nar/gkl737
    • (2006) Nucleic Acids Res , vol.34 , pp. 6146-6157
    • Kertész, S.1    Kerényi, Z.2    Mérai, Z.3    Bartos, I.4    Pálfy, T.5    Barta, E.6    Silhavy, D.7
  • 45
    • 0038343397 scopus 로고    scopus 로고
    • FY is an RNA 3′ end-processing factor that interacts with FCA to control the Arabidopsis floral transition
    • 12809608 12809608 10.1016/S0092-8674(03)00425-2
    • Simpson GG Dijkwel PP Quesada V Henderson I Dean C FY is an RNA 3′ end-processing factor that interacts with FCA to control the Arabidopsis floral transition Cell 2003, 113:777-787. 12809608 12809608 10.1016/ S0092-8674(03)00425-2
    • (2003) Cell , vol.113 , pp. 777-787
    • Simpson, G.G.1    Dijkwel, P.P.2    Quesada, V.3    Henderson, I.4    Dean, C.5
  • 46
    • 0025721986 scopus 로고
    • Inhibition of c-erbA mRNA splicing by a naturally occurring antisense RNA
    • 1657988 1657988
    • Munroe SH Lazra MA Inhibition of c-erbA mRNA splicing by a naturally occurring antisense RNA J Biol Chem 1991, 266:22083-22086. 1657988 1657988
    • (1991) J Biol Chem , vol.266 , pp. 22083-22086
    • Munroe, S.H.1    Lazra, M.A.2
  • 47
    • 15544380198 scopus 로고    scopus 로고
    • Naturally occurring antisense: Transcriptional leakage or real overlap?
    • 15710751 15710751 551562 10.1101/gr.3308405
    • Dahary D Elroy-Stein O Sorek R Naturally occurring antisense: transcriptional leakage or real overlap? Genome Res 2005, 15:364-368. 15710751 15710751 551562 10.1101/gr.3308405
    • (2005) Genome Res , vol.15 , pp. 364-368
    • Dahary, D.1    Elroy-Stein, O.2    Sorek, R.3
  • 48
    • 24644488895 scopus 로고    scopus 로고
    • Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation
    • 1175971 15960803 10.1186/gb-2005-6-6-r51
    • Jen C Michalopoulos I Westhead DR Meyer P Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation Genome Biol 2005, 6:R51. 1175971 15960803 10.1186/gb-2005-6-6-r51
    • (2005) Genome Biol , vol.6
    • Jen, C.1    Michalopoulos, I.2    Westhead, D.R.3    Meyer, P.4
  • 49
    • 34250212945 scopus 로고    scopus 로고
    • Sense-antisense pairs in mammals: Functional and evolutionary considerations
    • 1868933 17371592 10.1186/gb-2007-8-3-r40
    • Galante PAF Vidal DO de Souza JE Camargo AA de Souza SJ Sense-antisense pairs in mammals: Functional and evolutionary considerations Genome Biol 2007, 8:R40. 1868933 17371592 10.1186/gb-2007-8-3-r40
    • (2007) Genome Biol , vol.8
    • Galante, P.A.F.1    Vidal, D.O.2    de Souza, J.E.3    Camargo, A.A.4    de Souza, S.J.5
  • 50
    • 17644371012 scopus 로고    scopus 로고
    • Comparison of the transcript profiles from the root and the nodulating root of the model legume Lotus japonicus by Serial Analysis of Gene Expression
    • 10.1094/MPMI-18-0487 15915647
    • Aramizu E Nakamura Y Sata S Tabata S Comparison of the transcript profiles from the root and the nodulating root of the model legume Lotus japonicus by Serial Analysis of Gene Expression Mol Plant Microbe Interact 2005, 18:487-498. 10.1094/MPMI-18-0487 15915647
    • (2005) Mol Plant Microbe Interact , vol.18 , pp. 487-498
    • Aramizu, E.1    Nakamura, Y.2    Sata, S.3    Tabata, S.4
  • 53
    • 0028031830 scopus 로고
    • RNA-directed de novo methylation of genomic sequences in plants
    • 10.1016/0092-8674(94)90119-8 8313476
    • Wasseneger M Heimes S Reidel L Sänger HL RNA-directed de novo methylation of genomic sequences in plants Cell 1994, 76:567-576. 10.1016/0092-8674(94)90119-8 8313476
    • (1994) Cell , vol.76 , pp. 567-576
    • Wasseneger, M.1    Heimes, S.2    Reidel, L.3    Sänger, H.L.4
  • 54
    • 0035807818 scopus 로고    scopus 로고
    • Specific interference with gene expression induced by long, double-stranded RNA in mouse embryonal teratocarcinoma cell lines
    • 11724966 11724966 64698 10.1073/pnas.261562698
    • Billy E Brondani V Zhang H Müller U Filipowicz W Specific interference with gene expression induced by long, double-stranded RNA in mouse embryonal teratocarcinoma cell lines Proc Natl Acad Sci USA 2001, 98:14428-14433. 11724966 11724966 64698 10.1073/pnas.261562698
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 14428-14433
    • Billy, E.1    Brondani, V.2    Zhang, H.3    Müller, U.4    Filipowicz, W.5
  • 55
    • 33845395154 scopus 로고    scopus 로고
    • Prediction of trans-antisense transcripts in Arabidopsis thaliana
    • 17040561 17040561 1794575 10.1186/gb-2006-7-10-r92
    • Wang H Chua N Wang X Prediction of trans-antisense transcripts in Arabidopsis thaliana Genome Biol 2006, 7:R92. 17040561 17040561 1794575 10.1186/gb-2006-7-10-r92
    • (2006) Genome Biol , vol.7
    • Wang, H.1    Chua, N.2    Wang, X.3
  • 56
    • 34247099372 scopus 로고    scopus 로고
    • Regulatory mechanisms employed by cis-encoded antisense RNAs
    • 17387036 17387036 10.1016/j.mib.2007.03.012
    • Brantl S Regulatory mechanisms employed by cis-encoded antisense RNAs Curr Opin Microbiol 2007, 10:102-109. 17387036 17387036 10.1016/ j.mib.2007.03.012
    • (2007) Curr Opin Microbiol , vol.10 , pp. 102-109
    • Brantl, S.1
  • 57
    • 0030825876 scopus 로고    scopus 로고
    • Characterization of multiple alternative RNAs resulting from antisense transcription of the PR264/SC35 splicing factor gene
    • 9358160 9358160 147067 10.1093/nar/25.22.4513
    • Sureau A Soret J Guyon C Gaillard C Dumon S Keller M Crisanti P Perbal B Characterization of multiple alternative RNAs resulting from antisense transcription of the PR264/SC35 splicing factor gene Nucleic Acids Res 1997, 25:4513-4522. 9358160 9358160 147067 10.1093/nar/25.22.4513
    • (1997) Nucleic Acids Res , vol.25 , pp. 4513-4522
    • Sureau, A.1    Soret, J.2    Guyon, C.3    Gaillard, C.4    Dumon, S.5    Keller, M.6    Crisanti, P.7    Perbal, B.8
  • 58
    • 36148972085 scopus 로고    scopus 로고
    • Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D
    • 10.1093/nar/gkm683 17897965 2095812
    • Perocchi F Xu Z Clauder-Münster Steinmetz LM Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D Nucleic Acids Res 2007, 35(19):e128. 10.1093/nar/gkm683 17897965 2095812
    • (2007) Nucleic Acids Res , vol.35 , Issue.19
    • Perocchi, F.1    Xu, Z.2    Clauder-Münster3    Steinmetz, L.M.4
  • 59
    • 0035883706 scopus 로고    scopus 로고
    • Homing endonucleases: Structural and functional insight into the catalysts of intron/intein mobility
    • 55915 11557808 10.1093/nar/29.18.3757
    • Chavalier BS Stoddard BL Homing endonucleases: Structural and functional insight into the catalysts of intron/intein mobility Nucleic Acids Res 2001, 29:3757-3774. 55915 11557808 10.1093/nar/29.18.3757
    • (2001) Nucleic Acids Res , vol.29 , pp. 3757-3774
    • Chavalier, B.S.1    Stoddard, B.L.2
  • 60
    • 33645752060 scopus 로고    scopus 로고
    • The serine/arginine-rich protein family in rice plays important roles in constitutive and alternative splicing of pre-mRNA
    • 1323490 16339852 10.1105/tpc.105.037069
    • Isshiki M Tsumoto A Shimamoto K The serine/arginine-rich protein family in rice plays important roles in constitutive and alternative splicing of pre-mRNA Plant Cell 2006, 18:146-158. 1323490 16339852 10.1105/ tpc.105.037069
    • (2006) Plant Cell , vol.18 , pp. 146-158
    • Isshiki, M.1    Tsumoto, A.2    Shimamoto, K.3
  • 61
    • 24344497413 scopus 로고    scopus 로고
    • Methyl-CpG binding proteins in the nervous system
    • 10.1038/sj.cr.7290294 15857580
    • Fan G Hutnick L Methyl-CpG binding proteins in the nervous system Cell Res 2005, 15:255-261. 10.1038/sj.cr.7290294 15857580
    • (2005) Cell Res , vol.15 , pp. 255-261
    • Fan, G.1    Hutnick, L.2
  • 62
    • 27244432806 scopus 로고    scopus 로고
    • Evolutionary divergence of monocot and dicot methyl-CpG-binding domain proteins
    • 15888682 1104165
    • Springer NM Kaeppler SM Evolutionary divergence of monocot and dicot methyl-CpG-binding domain proteins Genome Anal 2005, 138(1):92-104. 15888682 1104165
    • (2005) Genome Anal , vol.138 , Issue.1 , pp. 92-104
    • Springer, N.M.1    Kaeppler, S.M.2
  • 63
    • 33846900215 scopus 로고    scopus 로고
    • Methyl-CpG-binding domain proteins in plants: Interpreters of DNA methylation
    • 10.1016/j.tplants.2006.12.004 17208509
    • Zemach A Grafi G Methyl-CpG-binding domain proteins in plants: interpreters of DNA methylation Trends Plant Sci 2007, 12:80-85. 10.1016/ j.tplants.2006.12.004 17208509
    • (2007) Trends Plant Sci , vol.12 , pp. 80-85
    • Zemach, A.1    Grafi, G.2
  • 64
    • 18944403234 scopus 로고    scopus 로고
    • Inositol 1,4,5-trisphosphate 3-kinase: Functions and regulations
    • 10.1038/sj.cr.7290270 15740635
    • Xia H Yang G Inositol 1,4,5-trisphosphate 3-kinase: Functions and regulations Cell Res 2005, 15:83-91. 10.1038/sj.cr.7290270 15740635
    • (2005) Cell Res , vol.15 , pp. 83-91
    • Xia, H.1    Yang, G.2
  • 65
    • 34250626068 scopus 로고    scopus 로고
    • Arabidopsis inositol polyphosphate 6-/3-kinase (AtIpk2β) is involved in axillary shoot branching via auxin signalling
    • 1914203 17434984 10.1104/pp.106.092163
    • Zhang Z Yang G Arana F Chen Z Li Y Xia H Arabidopsis inositol polyphosphate 6-/3-kinase (AtIpk2β) is involved in axillary shoot branching via auxin signalling Plant Physiol 2007, 144:942-951. 1914203 17434984 10.1104/pp.106.092163
    • (2007) Plant Physiol , vol.144 , pp. 942-951
    • Zhang, Z.1    Yang, G.2    Arana, F.3    Chen, Z.4    Li, Y.5    Xia, H.6
  • 66
    • 0242684549 scopus 로고    scopus 로고
    • Arabidopsis inositol polyphosphate 6-/3-kinase is a nuclear protein that complements a yeast mutant lacking a functional ArgR-Mcm1 transcription complex
    • 12566584 141213 10.1105/tpc.006676
    • Xia H Brearley C Elge S Kaplan B Fromm H Mueller-Roeber B Arabidopsis inositol polyphosphate 6-/3-kinase is a nuclear protein that complements a yeast mutant lacking a functional ArgR-Mcm1 transcription complex Plant Cell 2003, 15(2):229-463. 12566584 141213 10.1105/tpc.006676
    • (2003) Plant Cell , vol.15 , Issue.2 , pp. 229-463
    • Xia, H.1    Brearley, C.2    Elge, S.3    Kaplan, B.4    Fromm, H.5    Mueller-Roeber, B.6
  • 67
    • 33947604744 scopus 로고    scopus 로고
    • Comparative analysis of cis-encoded antisense RNAs in eukaryotes
    • 10.1016/j.gene.2006.12.005 17250976
    • Numata K Okada Y Saito R Kiyosawa H Kanai A Tomita M Comparative analysis of cis -encoded antisense RNAs in eukaryotes Gene 2007, 392:134-141. 10.1016/j.gene.2006.12.005 17250976
    • (2007) Gene , vol.392 , pp. 134-141
    • Numata, K.1    Okada, Y.2    Saito, R.3    Kiyosawa, H.4    Kanai, A.5    Tomita, M.6
  • 68
    • 34447132252 scopus 로고    scopus 로고
    • Distinct expression patterns of natural antisense transcripts in Arabidopsis
    • 1914114 17496106 10.1104/pp.107.100396
    • Henz SR Cumbie JS Kasschau KD Lohmann JU Carrington JC Weigel D Scmid M Distinct expression patterns of natural antisense transcripts in Arabidopsis Plant Physiol 2007, 144:1247-1255. 1914114 17496106 10.1104/ pp.107.100396
    • (2007) Plant Physiol , vol.144 , pp. 1247-1255
    • Henz, S.R.1    Cumbie, J.S.2    Kasschau, K.D.3    Lohmann, J.U.4    Carrington, J.C.5    Weigel, D.6    Scmid, M.7
  • 69
    • 34249099120 scopus 로고    scopus 로고
    • Silencing by imprinted noncoding RNAs: Is transcription the answer?
    • 10.1016/j.tig.2007.03.018 17445943
    • Pauler FM Koerner MV Barlow DP Silencing by imprinted noncoding RNAs: Is transcription the answer? Trends Genet 2007, 23:284-292. 10.1016/ j.tig.2007.03.018 17445943
    • (2007) Trends Genet , vol.23 , pp. 284-292
    • Pauler, F.M.1    Koerner, M.V.2    Barlow, D.P.3
  • 70
    • 34249326541 scopus 로고    scopus 로고
    • Potential pitfalls in the accuracy of analysis of natural sense-antisense RNA pairs by reverse transcription-PCR
    • 10.1186/1472-6750-7-21
    • Haddad F Qin AQX Giger JM Guo HY Baldwin KM Potential pitfalls in the accuracy of analysis of natural sense-antisense RNA pairs by reverse transcription-PCR BMC Biotechnol 2006, 7:21. 10.1186/1472-6750-7-21
    • (2006) BMC Biotechnol , vol.7 , pp. 21
    • Haddad, F.1    Qin, A.Q.X.2    Giger, J.M.3    Guo, H.Y.4    Baldwin, K.M.5


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