메뉴 건너뛰기




Volumn , Issue , 2008, Pages 2792-2798

Comparative study on normalization procedures for cluster analysis of gene expression datasets

Author keywords

[No Author keywords available]

Indexed keywords

BIOACTIVITY; CLUSTER ANALYSIS; CLUSTERING ALGORITHMS; FLOW OF SOLIDS; GENE EXPRESSION;

EID: 56349142124     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/IJCNN.2008.4634191     Document Type: Conference Paper
Times cited : (40)

References (29)
  • 1
    • 0038724494 scopus 로고    scopus 로고
    • Consensus clustering: A resampling-based method for class discovery and visualization of gene expression microarray data
    • S. Monti, P. Tamayo, J. Mesirov, and T. Golub, "Consensus clustering: a resampling-based method for class discovery and visualization of gene expression microarray data," Machine Learning, vol. 52, pp. 91-118, 2003.
    • (2003) Machine Learning , vol.52 , pp. 91-118
    • Monti, S.1    Tamayo, P.2    Mesirov, J.3    Golub, T.4
  • 2
    • 0035375137 scopus 로고    scopus 로고
    • Computational analysis of cDNA microarray data
    • J. Quackenbush, "Computational analysis of cDNA microarray data," Nature Reviews, vol. 6, no. 2, pp. 418-428, 2001.
    • (2001) Nature Reviews , vol.6 , Issue.2 , pp. 418-428
    • Quackenbush, J.1
  • 3
    • 0036899286 scopus 로고    scopus 로고
    • From patterns to pathways: Gene expression data analysis comes of age
    • D. Slonim, "From patterns to pathways: gene expression data analysis comes of age," Nature Genetics, vol. 32, pp. 502-508, 2002.
    • (2002) Nature Genetics , vol.32 , pp. 502-508
    • Slonim, D.1
  • 4
    • 28644449917 scopus 로고    scopus 로고
    • How does gene expression clustering work?
    • Dec, Online, Available
    • P. D'haeseleer, "How does gene expression clustering work?" Nat Biotech, vol. 23, no. 12, pp. 1499-1501, Dec. 2005. [Online]. Available: http://dx.doi.org/10.1038/nbt1205-.1499
    • (2005) Nat Biotech , vol.23 , Issue.12 , pp. 1499-1501
    • D'haeseleer, P.1
  • 6
    • 0000235019 scopus 로고
    • A study of standardization of variables in cluster analysis
    • G. W. Milligan and M. C. Cooper, "A study of standardization of variables in cluster analysis," Journal of Classification, vol. 5, pp. 181-204, 1988.
    • (1988) Journal of Classification , vol.5 , pp. 181-204
    • Milligan, G.W.1    Cooper, M.C.2
  • 7
    • 84948872101 scopus 로고
    • A study of the comparability of external criteria for hierarchical cluster analysis
    • -, "A study of the comparability of external criteria for hierarchical cluster analysis," Multivariate Behavorial Research, vol. 21, pp. 441-458, 1986.
    • (1986) Multivariate Behavorial Research , vol.21 , pp. 441-458
    • Milligan, G.W.1    Cooper, M.C.2
  • 8
    • 18544375333 scopus 로고    scopus 로고
    • S. A. Armstrong, J. E. Staunton, L. B. Silverman, R. Pieters, M. L. den Boer, M. D. Minden, S. E. Sallan, E. S. Lander, T. R. Golub, and S. J. Korsmeyer, Mll translocations specify a distinct gene expression profile that distinguishes a unique leukemia. Nat Genet, 30, no. 1, pp. 4.1-47, Jan 2002. [Online]. Available: http://dx.doi.org/10.1038/ng765
    • S. A. Armstrong, J. E. Staunton, L. B. Silverman, R. Pieters, M. L. den Boer, M. D. Minden, S. E. Sallan, E. S. Lander, T. R. Golub, and S. J. Korsmeyer, "Mll translocations specify a distinct gene expression profile that distinguishes a unique leukemia." Nat Genet, vol. 30, no. 1, pp. 4.1-47, Jan 2002. [Online]. Available: http://dx.doi.org/10.1038/ng765
  • 10
    • 32944471569 scopus 로고    scopus 로고
    • Prognostic gene expression signatures can be measured in tissues collected in rnalater preservative
    • Feb
    • D. Chowdary, J. Lathrop, J. Skelton, K. Curtin, T. Briggs, Y. Zhang, J. Yu, Y. Wang, and A. Mazumder, "Prognostic gene expression signatures can be measured in tissues collected in rnalater preservative." J Mol Diagn, vol. 8, no. 1, pp. 31-39, Feb 2006.
    • (2006) J Mol Diagn , vol.8 , Issue.1 , pp. 31-39
    • Chowdary, D.1    Lathrop, J.2    Skelton, J.3    Curtin, K.4    Briggs, T.5    Zhang, Y.6    Yu, J.7    Wang, Y.8    Mazumder, A.9
  • 11
    • 0037224449 scopus 로고    scopus 로고
    • Identifying distinct classes of bladder carcinoma using micro-arrays
    • Jan, Online, Available
    • L. Dyrskjt, T. Thykjaer, M. Kruhffer, J. L. Jensen, N. Marcussen, S. Hamilton-Dutoit, H. Wolf, and T. F. Orntoft, "Identifying distinct classes of bladder carcinoma using micro-arrays." Nat Genet, vol. 33, no. 1, pp. 90-96, Jan 2003. [Online]. Available: http://dx.doi.org/10.1038/ng1061
    • (2003) Nat Genet , vol.33 , Issue.1 , pp. 90-96
    • Dyrskjt, L.1    Thykjaer, T.2    Kruhffer, M.3    Jensen, J.L.4    Marcussen, N.5    Hamilton-Dutoit, S.6    Wolf, H.7    Orntoft, T.F.8
  • 13
    • 0036735386 scopus 로고    scopus 로고
    • Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma
    • Sep
    • G. J. Gordon, R. V. Jensen, L.-L. Hsiao, S. R. Gullans, J. E. Blumenstock, S. Ramaswamy, W. G. Richards, D. J. Sugarbaker, and R. Bueno, "Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma." Cancer Res, vol. 62, no. 17, pp. 4963-4967, Sep 2002.
    • (2002) Cancer Res , vol.62 , Issue.17 , pp. 4963-4967
    • Gordon, G.J.1    Jensen, R.V.2    Hsiao, L.-L.3    Gullans, S.R.4    Blumenstock, J.E.5    Ramaswamy, S.6    Richards, W.G.7    Sugarbaker, D.J.8    Bueno, R.9
  • 16
    • 0037165140 scopus 로고    scopus 로고
    • S. L. Pomeroy, P. Tamayo, M. Gaasenbeek, L. M. Sturla, M. Angelo, M. E. McLaughlin, J. Y. H. Kim, L. C. Goumnerova, P. M. Black, C. Lau, J. C. Allen, D. Zagzag, J. M. Olson, T. Curran, C. Wetmore, J. A. Biegel, T. Poggio, S. Mukherjee, R. Rifkin, A. Califano, G. Stolovitzky, D. N. Louis, J. P. Mesirov, E. S. Lander, and T. R. Golub, Prediction of central nervous system, embryonal tumour outcome based on gene expression. Nature, 415, no. 6870, pp. 436-442, Jan 2002. [Online]. Available: http://dx.doi.org/10. 1038/415436a
    • S. L. Pomeroy, P. Tamayo, M. Gaasenbeek, L. M. Sturla, M. Angelo, M. E. McLaughlin, J. Y. H. Kim, L. C. Goumnerova, P. M. Black, C. Lau, J. C. Allen, D. Zagzag, J. M. Olson, T. Curran, C. Wetmore, J. A. Biegel, T. Poggio, S. Mukherjee, R. Rifkin, A. Califano, G. Stolovitzky, D. N. Louis, J. P. Mesirov, E. S. Lander, and T. R. Golub, "Prediction of central nervous system, embryonal tumour outcome based on gene expression." Nature, vol. 415, no. 6870, pp. 436-442, Jan 2002. [Online]. Available: http://dx.doi.org/10. 1038/415436a
  • 17
    • 0347201147 scopus 로고    scopus 로고
    • S. Ramaswamy, P. Tamayo, R. Rifkin, S. Mukherjee, C. H. Yeang, M. Angelo, C. Ladd, M. Reich, E. Latulippe, J. P. Mesirov, T. Poggio, W. Gerald, M. Loda, E. S. Lander, and T. R. Golub, Multiclass cancer diagnosis using tumor gene expression signatures. Proc Natl Acad Sci USA, 98, no. 26, pp. 15 149-15 154, Dec 2001. [Online]. Available: http://dx.doi.org/10.1073/ pnas.211566398
    • S. Ramaswamy, P. Tamayo, R. Rifkin, S. Mukherjee, C. H. Yeang, M. Angelo, C. Ladd, M. Reich, E. Latulippe, J. P. Mesirov, T. Poggio, W. Gerald, M. Loda, E. S. Lander, and T. R. Golub, "Multiclass cancer diagnosis using tumor gene expression signatures." Proc Natl Acad Sci USA, vol. 98, no. 26, pp. 15 149-15 154, Dec 2001. [Online]. Available: http://dx.doi.org/10.1073/ pnas.211566398
  • 20
    • 0035949684 scopus 로고    scopus 로고
    • Predicting the clinical status of human breast cancer by using gene expression profiles
    • Sep, Online, Available
    • M. West, C. Blanchette, H. Dressman, E. Huang, S. Ishida, R. Spang, H. Zuzan, J. A. Olson, J. R. Marks, and J. R. Nevins, "Predicting the clinical status of human breast cancer by using gene expression profiles." Proc Natl Acad Sci U S A, vol. 98, no. 20, pp. 11462-11467, Sep 2001. [Online]. Available: http://dx.doi.org/10.1073/pnas.201162998
    • (2001) Proc Natl Acad Sci U S A , vol.98 , Issue.20 , pp. 11462-11467
    • West, M.1    Blanchette, C.2    Dressman, H.3    Huang, E.4    Ishida, S.5    Spang, R.6    Zuzan, H.7    Olson, J.A.8    Marks, J.R.9    Nevins, J.R.10
  • 22
    • 0034598746 scopus 로고    scopus 로고
    • A. A. Alizadeh, M. B. Eisen, R. E. Davis, C. Ma, I. S. Lossos, A. Rosenwald, J. C. Boldrick, H. Sabet, T. Tran, X. Yu, J. I. Powell, L. Yang, G. E. Marti, T. Moore, J. Hudson, L. Lu, D. B. Lewis, R. Tibshirani, G. Sherlock, W. C. Chan, T. C. Greiner, D. D. Weisenburger, J. O. Armitage, R. Warnke, R. Levy, W. Wilson, M. R. Grever, J. C. Byrd, D. Botstein, P. O. Brown, and L. M. Staudt, Distinct types of diffuse large B-cell lymphoma identified by gene expression, profiling, Nature, 403, pp. 503-511, 2000.
    • A. A. Alizadeh, M. B. Eisen, R. E. Davis, C. Ma, I. S. Lossos, A. Rosenwald, J. C. Boldrick, H. Sabet, T. Tran, X. Yu, J. I. Powell, L. Yang, G. E. Marti, T. Moore, J. Hudson, L. Lu, D. B. Lewis, R. Tibshirani, G. Sherlock, W. C. Chan, T. C. Greiner, D. D. Weisenburger, J. O. Armitage, R. Warnke, R. Levy, W. Wilson, M. R. Grever, J. C. Byrd, D. Botstein, P. O. Brown, and L. M. Staudt, "Distinct types of diffuse large B-cell lymphoma identified by gene expression, profiling," Nature, vol. 403, pp. 503-511, 2000.
  • 23
    • 0034601455 scopus 로고    scopus 로고
    • M. Bittner, P. Meltzer, Y. Chen, Y. Jiang, E. Seftor, M. Hendrix, M. Radmacher, R. Simon, Z. Yakhini, A. Ben-Dor, N. Sampas, E. Dougherty, E. Wang, F. Marincola, C. Gooden, J. Lueders, A. Glatfelter, P. Pollock, J. Carpten, E. Gillanders, D. Leja, K. Dietrich, C. Beaudry, M. Berens, D. Alberts, and V. Sondak, Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature, 406, no. 6795, pp. 536-540, Aug 2000. [Online]. Available: http://dx.doi.org/10.1038/350201.15
    • M. Bittner, P. Meltzer, Y. Chen, Y. Jiang, E. Seftor, M. Hendrix, M. Radmacher, R. Simon, Z. Yakhini, A. Ben-Dor, N. Sampas, E. Dougherty, E. Wang, F. Marincola, C. Gooden, J. Lueders, A. Glatfelter, P. Pollock, J. Carpten, E. Gillanders, D. Leja, K. Dietrich, C. Beaudry, M. Berens, D. Alberts, and V. Sondak, "Molecular classification of cutaneous malignant melanoma by gene expression profiling." Nature, vol. 406, no. 6795, pp. 536-540, Aug 2000. [Online]. Available: http://dx.doi.org/10.1038/350201.15
  • 24
    • 9144251970 scopus 로고    scopus 로고
    • J. Lapointe, C. Li, J. P. Higgins, M. van de Rijn, E. Bair, K. Montgomery, M. Ferrari, L. Egevad, W. Rayford, U. Bergerheim, P. Ekman, A. M. DeMarzo, R. Tibshirani, D. Botstein, P. O. Brown, J. D. Brooks, and J. R. Pollack, Gene expression profiling identifies clinically relevant subtypes of prostate cancer. Proc Natl Acad Sci U S A, 10.1, no. 3, pp. 811-816, Jan 2004. [Online]. Available: http://dx.doi.org/10.1073/pnas. 0304146101
    • J. Lapointe, C. Li, J. P. Higgins, M. van de Rijn, E. Bair, K. Montgomery, M. Ferrari, L. Egevad, W. Rayford, U. Bergerheim, P. Ekman, A. M. DeMarzo, R. Tibshirani, D. Botstein, P. O. Brown, J. D. Brooks, and J. R. Pollack, "Gene expression profiling identifies clinically relevant subtypes of prostate cancer." Proc Natl Acad Sci U S A, vol. 10.1, no. 3, pp. 811-816, Jan 2004. [Online]. Available: http://dx.doi.org/10.1073/pnas. 0304146101
  • 25
    • 1442335997 scopus 로고    scopus 로고
    • Gene expression-based high-throughput screening(ge-hts) and application to leukemia differentiation
    • K. Stegmaier, K. N. Ross, S. A. Colavito, S. OMalley, B. R. Stockwell, and T. R. Golub, "Gene expression-based high-throughput screening(ge-hts) and application to leukemia differentiation," Nature Genetics, vol. 36, no. 3, pp. 257-263, 2004.
    • (2004) Nature Genetics , vol.36 , Issue.3 , pp. 257-263
    • Stegmaier, K.1    Ross, K.N.2    Colavito, S.A.3    OMalley, S.4    Stockwell, B.R.5    Golub, T.R.6
  • 26
    • 11344295027 scopus 로고    scopus 로고
    • Comparative analysis of clustering methods for gene expression time course data
    • Online, Available
    • I. G. Costa, F. A. D. Carvalho, and M. C. P. D. Souto, "Comparative analysis of clustering methods for gene expression time course data," Genetics and Molecular Biology, vol. 27, no. 4, pp. 623 - 631, 2004. [Online]. Available: http://www.scielo.br/pdf/gmb/v27n4/22434.pdf
    • (2004) Genetics and Molecular Biology , vol.27 , Issue.4 , pp. 623-631
    • Costa, I.G.1    Carvalho, F.A.D.2    Souto, M.C.P.D.3
  • 27
    • 0037342510 scopus 로고    scopus 로고
    • Comparisons and validation of statistical clustering techniques for microarray gene expression data
    • S. Datta and S. Datta, "Comparisons and validation of statistical clustering techniques for microarray gene expression data," Bioinformatics, vol. 19, pp. 459-466, 2003.
    • (2003) Bioinformatics , vol.19 , pp. 459-466
    • Datta, S.1    Datta, S.2
  • 29
    • 18244384210 scopus 로고    scopus 로고
    • R. A. Irizarry, D. Warren, F. Spencer, I. F. Kim, S. Biswal, B. C. Frank, E. Gabrielson, J. G. N. Garcia, J. Geoghegan, G. Germino, C. Griffin, S. C. Hilmer, E. Hoffman, A. E. Jedlicka, E. Kawasaki, F. Martnez-Murillo, L. Morsberger, H. Lee, D. Petersen, J. Quackenbush, A. Scott, M. Wilson, Y. Yang, S. Q. Ye, and W. Yu, Multiple-laboratory comparison of microarray platforms. Nat Methods, 2, no. 5, pp. 345-350, May 2005. [Online]. Available: http://dx.doi.org/10.1038/nmeth756
    • R. A. Irizarry, D. Warren, F. Spencer, I. F. Kim, S. Biswal, B. C. Frank, E. Gabrielson, J. G. N. Garcia, J. Geoghegan, G. Germino, C. Griffin, S. C. Hilmer, E. Hoffman, A. E. Jedlicka, E. Kawasaki, F. Martnez-Murillo, L. Morsberger, H. Lee, D. Petersen, J. Quackenbush, A. Scott, M. Wilson, Y. Yang, S. Q. Ye, and W. Yu, "Multiple-laboratory comparison of microarray platforms." Nat Methods, vol. 2, no. 5, pp. 345-350, May 2005. [Online]. Available: http://dx.doi.org/10.1038/nmeth756


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.