메뉴 건너뛰기




Volumn 3, Issue 3, 2008, Pages 180-183

Rapid enumeration of sulphate-reducing bacteria from aquatic environments using real-time PCR

Author keywords

Dissimilatory sulphite reductase; DNA extraction; Real time PCR

Indexed keywords

AQUATIC ENVIRONMENT; ASSAY; ENZYME ACTIVITY; POLYMERASE CHAIN REACTION; QUANTITATIVE ANALYSIS; SULFATE-REDUCING BACTERIUM;

EID: 56349119945     PISSN: 18808247     EISSN: None     Source Type: Journal    
DOI: 10.3800/pbr.3.180     Document Type: Article
Times cited : (33)

References (21)
  • 2
    • 0001639604 scopus 로고
    • Evaluation of viable counting procedures for the enumeration of sulfate-reducing bacteria in estuarine sediments
    • Gibson GR, Parkers RJ, Herbert RA (1987) Evaluation of viable counting procedures for the enumeration of sulfate-reducing bacteria in estuarine sediments. J Microbiol Methods 7: 201-210.
    • (1987) J Microbiol Methods , vol.7 , pp. 201-210
    • Gibson, G.R.1    Parkers, R.J.2    Herbert, R.A.3
  • 3
    • 0035409593 scopus 로고    scopus 로고
    • Congruent phylogenies of most common small-subunit rRNA and dissimilatory sulfite reductase gene sequences retrieved from estuarine sediments
    • Joulian C, Ramsing NB, Ingvorsen K (2001) Congruent phylogenies of most common small-subunit rRNA and dissimilatory sulfite reductase gene sequences retrieved from estuarine sediments. Appl Environ Microbiol 67: 3314-3318.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3314-3318
    • Joulian, C.1    Ramsing, N.B.2    Ingvorsen, K.3
  • 4
    • 84951576810 scopus 로고
    • A comparison of methods for the quantification of bacterial sulfate reduction in coastal marine sediments. III. Estimation from chemical and bacteriological field data
    • Jørgensen BB (1978) A comparison of methods for the quantification of bacterial sulfate reduction in coastal marine sediments. III. Estimation from chemical and bacteriological field data. Geomicrobiol J 1: 49-63.
    • (1978) Geomicrobiol J , vol.1 , pp. 49-63
    • Jørgensen, B.B.1
  • 5
    • 0019999242 scopus 로고
    • Mineralization of organic matter in the sea-bed-The role of sulfate reduction
    • Jørgensen BB (1982) Mineralization of organic matter in the sea-bed-The role of sulfate reduction. Nature 269: 643-645.
    • (1982) Nature , vol.269 , pp. 643-645
    • Jørgensen, B.B.1
  • 6
    • 41749100580 scopus 로고    scopus 로고
    • Distribution of sulfate-reducing bacteria in fish farm sediments on the coast of southern Fukui prefecture, Japan
    • Kawahara N, Shigematsu K, Miura S, Miyadai T, Kondo R (2008) Distribution of sulfate-reducing bacteria in fish farm sediments on the coast of southern Fukui prefecture, Japan. Plankton Benthos Res 3: 42-45.
    • (2008) Plankton Benthos Res , vol.3 , pp. 42-45
    • Kawahara, N.1    Shigematsu, K.2    Miura, S.3    Miyadai, T.4    Kondo, R.5
  • 7
    • 34547954968 scopus 로고    scopus 로고
    • Comparison of the diversity of sulfate-reducing bacterial communities in the water column and the surface sediments of a Japanese meromictic lake
    • Kondo R, Butani J (2007) Comparison of the diversity of sulfate-reducing bacterial communities in the water column and the surface sediments of a Japanese meromictic lake. Limnology 8: 131-141.
    • (2007) Limnology , vol.8 , pp. 131-141
    • Kondo, R.1    Butani, J.2
  • 8
    • 1842735914 scopus 로고    scopus 로고
    • Detection and enumeration of sulphate-reducing bacteria in estuarine sediments by competitive PCR
    • Kondo R, Nedwell DB, Purdy KJ, Silva SQ (2004) Detection and enumeration of sulphate-reducing bacteria in estuarine sediments by competitive PCR. Geomicrobiol J 21: 145-157.
    • (2004) Geomicrobiol J , vol.21 , pp. 145-157
    • Kondo, R.1    Nedwell, D.B.2    Purdy, K.J.3    Silva, S.Q.4
  • 9
    • 34447326754 scopus 로고    scopus 로고
    • Abundance and diversity of sulphate-reducing bacterioplankton in Lake Suigetsu, a meromictic lake in Fukui, Japan
    • Kondo R, Osawa K, Mochizuki L, Fujioka Y, Butani J (2006) Abundance and diversity of sulphate-reducing bacterioplankton in Lake Suigetsu, a meromictic lake in Fukui, Japan. Plankton Benthos Res 1: 165-177.
    • (2006) Plankton Benthos Res , vol.1 , pp. 165-177
    • Kondo, R.1    Osawa, K.2    Mochizuki, L.3    Fujioka, Y.4    Butani, J.5
  • 10
    • 85017152267 scopus 로고    scopus 로고
    • Spatial dynamics of sulphate-reducing bacterial compositions in sediment along a salinity gradient in a UK estuary
    • Kondo R, Purdy KJ, Silva SQ, Nedwell DB (2007) Spatial dynamics of sulphate-reducing bacterial compositions in sediment along a salinity gradient in a UK estuary. Microbes Environ 22: 11-19.
    • (2007) Microbes Environ , vol.22 , pp. 11-19
    • Kondo, R.1    Purdy, K.J.2    Silva, S.Q.3    Nedwell, D.B.4
  • 11
    • 33846033212 scopus 로고    scopus 로고
    • Diversity and abundance of sulfate-reducing microorganisms in the sulfate and methane zones of a marine sediment, Black Sea
    • Leloup J, Loy A, Knob NJ, Borowski C, Wagner M, Jørgensen BB (2007) Diversity and abundance of sulfate-reducing microorganisms in the sulfate and methane zones of a marine sediment, Black Sea. Environ Microbiol 9: 131-142.
    • (2007) Environ Microbiol , vol.9 , pp. 131-142
    • Leloup, J.1    Loy, A.2    Knob, N.J.3    Borowski, C.4    Wagner, M.5    Jørgensen, B.B.6
  • 13
    • 0035072290 scopus 로고    scopus 로고
    • Molecular characterization of sulfate-reducing bacteria in anaerobic hydrocarbon-degrading and pure cultures using the dissimilatory sulfite reductase (dsrAB) genes
    • Pérez-Jiménez JR, Young LY, Kerkhof LJ (2001) Molecular characterization of sulfate-reducing bacteria in anaerobic hydrocarbon-degrading and pure cultures using the dissimilatory sulfite reductase (dsrAB) genes. FEMS Microbiol Ecol 35: 145-150.
    • (2001) FEMS Microbiol Ecol , vol.35 , pp. 145-150
    • Pérez-Jiménez, J.R.1    Young, L.Y.2    Kerkhof, L.J.3
  • 14
    • 84986870589 scopus 로고
    • The use of DAPI for identifying and counting aquatic microflora
    • Porter KG, Feig YS (1980) The use of DAPI for identifying and counting aquatic microflora. Limnol Oceanogr 25: 943-948.
    • (1980) Limnol Oceanogr , vol.25 , pp. 943-948
    • Porter, K.G.1    Feig, Y.S.2
  • 16
    • 0029759760 scopus 로고    scopus 로고
    • Rapid extraction of DNA and rRNA from sediments by a novel hydroxyapatite spin-column method
    • Purdy KJ, Embley TM, Takii S, Nedwell DB (1996) Rapid extraction of DNA and rRNA from sediments by a novel hydroxyapatite spin-column method. Appl Environ Microbiol 62: 3905-3907.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 3905-3907
    • Purdy, K.J.1    Embley, T.M.2    Takii, S.3    Nedwell, D.B.4
  • 17
    • 33745121530 scopus 로고    scopus 로고
    • Quantification of microbial communities in near-surface and deeply buried marine sediments on the Peru continental margin using real-time PCR
    • Schippers A, Neretin LN (2006) Quantification of microbial communities in near-surface and deeply buried marine sediments on the Peru continental margin using real-time PCR. Environ Microbiol 8: 1251-1260.
    • (2006) Environ Microbiol , vol.8 , pp. 1251-1260
    • Schippers, A.1    Neretin, L.N.2
  • 18
    • 0035316138 scopus 로고    scopus 로고
    • Biogeochemical and molecular signatures of anaerobic methane oxidation in a marine sediment
    • Thomsen TR, Finster K, Ramsing NB (2001) Biogeochemical and molecular signatures of anaerobic methane oxidation in a marine sediment. Appl Environ Microbiol 67: 1646-1656.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 1646-1656
    • Thomsen, T.R.1    Finster, K.2    Ramsing, N.B.3
  • 19
    • 0032463021 scopus 로고    scopus 로고
    • Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration
    • Wagner M, Roger AJ, Flax JL, Brusseau GA, Stahl DA (1998) Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration. J Bacteriol 180: 2975-2982.
    • (1998) J Bacteriol , vol.180 , pp. 2975-2982
    • Wagner, M.1    Roger, A.J.2    Flax, J.L.3    Brusseau, G.A.4    Stahl, D.A.5
  • 20
    • 33746716094 scopus 로고    scopus 로고
    • Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin
    • Webster G, Parkes RJ, Cragg BA, Newberry CJ, Weightman AJ, Fry JC (2006) Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin. FEMS Microbiol Ecol 58: 65-85.
    • (2006) FEMS Microbiol Ecol , vol.58 , pp. 65-85
    • Webster, G.1    Parkes, R.J.2    Cragg, B.A.3    Newberry, C.J.4    Weightman, A.J.5    Fry, J.C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.